The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY...

49
The Prokaryotes Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LESSON 4
  • date post

    18-Dec-2015
  • Category

    Documents

  • view

    215
  • download

    2

Transcript of The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY...

Page 1: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

The ProkaryotesThe Prokaryotes

Sofronio Agustin

Professor

Sofronio Agustin

Professor

LECTURES IN MICROBIOLOGYLECTURES IN

MICROBIOLOGY

LESSON 4LESSON 4

Page 2: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

2

Lesson 4 TopicsLesson 4 Topics

External Structures Cell Envelope Internal Structures Cell Shapes, Arrangement, and Sizes Classification

Page 3: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

3

External StructuresExternal Structures

Flagella

Pili and fimbriae

Glycocalyx

Page 4: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

4

FlagellaFlagella

Composed of protein subunits called flagellin.

“H” antigens used in serotyping of bacterial

strains. Example: Escherichia coli O157: H7

Page 5: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

5

Flagellar StructureFlagellar Structure

Three components of a flagellum: filament, hook and basal body

Page 6: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

6

Flagellar ArrangementFlagellar Arrangement

(a) Monotrichous (b) Lophotrichous (c) Amphitrichous (d) Peritrichous

Page 7: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

7

Bacterial MotilityBacterial Motility

The rotation of the flagella enables bacteria to be motile.

Page 8: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

8

ChemotaxisChemotaxis

Chemotaxis is the movement of bacteria in response to chemical signals. It consists of a series of tumbles and runs toward or away from source of stimuli.

Page 9: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

9

EndoflagellaEndoflagella

Spirochetes have their

flagella embedded in the

membrane = endoflagella

Also called axial filament

Example: T. pallidum

(corkscrew motility)

Page 10: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

10

Pili and FimbriaePili and Fimbriae

Attachment

Mating (Conjugation)

Page 11: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

11

FimbriaeFimbriae

Fimbriae are smaller than flagella and are important for attachment.

Page 12: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

12

Pili Pili

Pili enable conjugation to occur, which is the transfer of DNA from one bacterial cell to another (“mating”).

Page 13: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

13

Glycocalyx

CapsuleProtects bacteria from phagocytic cells

Slime layerEnable attachment and aggregation of bacterial cells

Page 14: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

14

CapsuleCapsule

The capsule is covalently

bound to the cell wall.

Associated with virulence in bacteria.

Example:

Streptococcus pneumoniae

Page 15: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

15

Slime LayerSlime Layer

The slime layer is loosely bound to the cell.

Carbohydrate rich material enhances adherence of cells on surfaces

Example:Streptococcus mutans and “plaque formation”

Page 16: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

16

Biofilms Biofilms

The slime layer is associated with cell aggregation and the formation of biofilms

Example:Staphylococcus epidermidis biofilms on catheter tips

Page 17: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

17

Cell EnvelopeCell Envelope

Cell wallGram-positive

Gram-negative

Cytoplasmic membrane Cell wall-less bacteria

Page 18: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

18

Cell Wall Cell Wall

Gram positive cell wall Thick peptidoglycan (PG) layer Acidic polysaccharides Teichoic acid and lipoteichoic acid

Gram-negative cell wall Thin peptidoglycan (PG) layer Lipopolysaccharide layer Porins Periplasmic space

Page 19: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

19

Peptidoglycan Layer Peptidoglycan Layer

PG is a complex sugar and peptide structure important for cell wall stability and shape.

Page 20: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

20

Cell Wall Structures Cell Wall Structures

Structures associated with gram-positive and gram-negative cell walls.

Page 21: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

21

Cytoplasmic MembraneCytoplasmic Membrane

Phospholipid bilayer “Fluid mosaic” model

Embedded proteins for active transport

Enzymes for energy generation

Photosynthetic pigments

Page 22: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

22

L FormsL Forms

Mutations can cause some bacteria to lose the ability to synthesize the cell wall and are called L forms.

Page 23: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

23

Cell Wall Less Bacteria Cell Wall Less Bacteria

No peptidoglycan layer

Cell membrane contains sterols for stability

Page 24: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

24

The MycoplasmaThe Mycoplasma

Mycoplasma bacteria

have no cell wall, which

contributes to their

pleomorphic shapes

Smallest bacteria (0.2 um)

Example:Mycoplasma pneumoniae (SEM on right)

Page 25: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

25

Internal Structures

Cytoplasm Genome Inclusion bodies Actin Endospore

Page 26: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

26

CytoplasmCytoplasm

Gelatinous solution containing water,

nutrients, proteins, and genetic material

Site for cell metabolism

Page 27: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

27

Genetic StructuresGenetic Structures

Deoxyribonucleic acid (DNA)

Ribonucleic acid (RNA)

Ribosomes

Page 28: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

28

Bacterial Genome Bacterial Genome

Most bacteria contain a single circular double strand of DNA called a nucleoid.

Page 29: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

29

Prokaryotic RibosomeProkaryotic Ribosome

A ribosome is a combination of RNA and protein, and is the site for protein synthesis

Composed of large (50S) and small (30S) subunits

S = Svedverg unit, measures molecular size

Page 30: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

30

Inclusion BodiesInclusion Bodies

Inclusion bodies enable a cell to store nutrients and to survive in nutrient depleted environments

Page 31: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

31

Bacterial CytoskeletonBacterial Cytoskeleton

Actin is a protein fiber present in some bacteria, which is involved in maintaining cell shape.

Page 32: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

32

Endospores Endospores

Nutrient depletion induces some bacteria (vegetative cell) to form endospores in order to survive

Dehydrated gel state due to calcium-protein complex

Dipicolinic acid (found only in spores) hardens the spore

Page 33: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

33

Endospore FormationEndospore Formation

Some pathogenic bacteria that produce toxins during the vegetative stage are capable of forming spores. (e.g. Bacillus and Clostridium species)

Page 34: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

34

Bacterial MorphologyBacterial Morphology

Coccus Rod or bacillus Curved or spiral Cell arrangements Pleomorphism

Page 35: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

35

Typical Shapes and ArrangementsTypical Shapes and Arrangements

Scanning electron micrographs of different bacterial shapes and arrangements.

(a) Streptococcus (b) Bacillus (c) Spirochete (d) Spirillum

Page 36: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

36

PleomorphismPleomorphism

Some bacteria show varied shapes and arrangements called pleomorphism. Ex: Corynebacterium diphtheriae’s “Chinese letter” arrangement.

Page 37: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

37

Bacterial Shapes and Arrangements Bacterial Shapes and Arrangements

Cellular shapes and arrangements are useful in bacterial identification.

Page 38: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

38

The Dimension of Bacteria The Dimension of Bacteria

Relative size of a bacterial cell compared to other cells including viruses.

Page 39: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

39

ClassificationClassification

Phenotypic methods

Molecular methods

Taxonomic scheme Unique groups

Page 40: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

40

Phenotypic MethodsPhenotypic Methods

Cell morphology - staining Biochemical test – enzyme test

Page 41: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

41

Molecular MethodsMolecular Methods

DNA sequence 16S RNA Protein sequence

Page 42: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

42

Major Taxonomic Groups of BacteriaMajor Taxonomic Groups of Bacteria

The methods of classification have allowed bacteria to be classified into different taxonomic groups

Re: Bergey’s Manual of Determinative Bacteriology(Table on right)

Page 43: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

43

Unique Bacterial TypesUnique Bacterial Types

Intracellular bacteria

Photosynthetic bacteria

Sulfur bacteria

Gliding and fruiting bacteria

Page 44: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

44

Intracellular BacteriaIntracellular Bacteria

Intracellular bacteria

must live in host cells for

them to metabolize and

reproduce

Examples:

Rickettsiae

and Chlamydiae

Page 45: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

45

CyanobacteriaCyanobacteria

Cyanobacteria are important photosynthetic bacteria associated with oxygen production.

Page 46: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

46

Sulfur BacteriaSulfur Bacteria

Green and purple sulfur bacteria are photosynthetic, do not give off oxygen, and are found in sulfur springs, freshwater, and swamps.

Page 47: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

47

MyxobacteriaMyxobacteria

An example of a fruiting body bacteria in which reproductive spores are produced.

Page 48: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

48

ArchaeaArchaea

Associated with extreme environments Contain unique cell walls Contain unique internal structures

Page 49: The Prokaryotes Sofronio Agustin Professor Sofronio Agustin Professor LECTURES IN MICROBIOLOGY LECTURES IN MICROBIOLOGY LESSON 4.

49

ArchaeaArchaea

Archaea are found in:

hot springs (thermophiles) high salt content areas (halophiles)

Example:Halobacterium salinarium