Sequence motifs, information content, logos, and HMMs Morten Nielsen, CBS, BioCentrum, DTU.
Artificial Neural Networks 1 Morten Nielsen Department of Systems Biology, DTU IIB-INTECH, UNSAM, Argentina.
Sequence Alignment and Phylogeny Dr Peter Smooker, [email protected] B I O I N F O R M A T I C S | | | | | | | B I O L O G Y - M A T H - S.
The Needleman Wunsch algorithm
Psi-Blast Morten Nielsen, CBS, BioCentrum, DTU. Objectives Understand why BLAST often fails for low sequence similarity See the beauty of sequence profiles.
Advanced Database Searching June 24, 2008 Jonathan Pevsner, Ph.D. Introduction to Bioinformatics Johns Hopkins University.
Intro to Alignment Algorithms: Global and Local Intro to Alignment Algorithms: Global and Local Algorithmic Functions of Computational Biology Professor.
Scoring Matrices June 19, 2008 Learning objectives- Understand how scoring matrices are constructed. Workshop-Use different BLOSUM matrices in the Dotter.
Advanced BLAST Searching
Eric C. Rouchka, University of Louisville Sequence Database Searching Eric Rouchka, D.Sc. [email protected] Bioinformatics Journal Club October.
Sequence encoding, Cross Validation Morten Nielsen BioSys, DTU
Profiles and Fuzzy K-Nearest Neighbor Algorithm for Protein Secondary Structure Prediction
