SKELETOCHRONOLOGY AS A METHOD OF AGING...
Transcript of SKELETOCHRONOLOGY AS A METHOD OF AGING...
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SKELETOCHRONOLOGY AS A METHOD OF AGING OLIGOCENE Gopherus
laticuneus AND Stylemys nebrascensis, USING Gopherus polyphemus AS A MODERN ANALOG
By
DANA JOSEPH EHRET
A THESIS PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT
OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE
UNIVERSITY OF FLORIDA
2004
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ACKNOWLEDGMENTS
First and foremost, I would like to thank my committee (especially Dr. Bruce J.
MacFadden and Mr. Dick Franz) for all of their support and guidance. I would also like
to extend thanks to Dr. Greg Erickson (at Florida State University) for the use of his lab,
and the many long talks discussing skeletochronology and methods. I would like to
mention all of the individuals who donated specimens for my research: Dr. Peter
Pritchard; Karen Frutchey (University of Central Florida); Boyd Blihovde (Wekiwa
Springs State Park); Joan Berish (Florida Fish and Wildlife); Dr. Craig Guyer (Auburn
Univeristy); and Dave Parker (Ft. Matanzas National Monument). I would also like to
thank members of the 2001 Pony Express collecting trip (including Barbara, Reed and
Jim Toomey) for their hospitality; and Ms. Marcia Wright and Helen Cozzinni for their
field assistance. Special thanks also go to Mr. Russ McCarty, for his help with fossil
preparation and pep talks. For their financial support, I would like to thank the Gopher
Tortoise Council, The Southwest Florida Fossil Club, and the Lucy Dickinson
Fellowship/Florida Museum of Natural History. Finally, I would like to thank my family
for their moral and financial support.
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TABLE OF CONTENTS page ACKNOWLEDGMENTS .................................................................................................. ii
LIST OF TABLES...............................................................................................................v
LIST OF FIGURES ........................................................................................................... vi
ABSTRACT...................................................................................................................... vii
CHAPTER
1 INTRODUCTION ........................................................................................................1
Importance of this Research .........................................................................................2 Overview of the Nebraska Badlands ............................................................................3 Modern Gopherus polyphemus Samples ......................................................................8 Fossil Tortoise Background..........................................................................................9 Paleoenvironment and Paleoclimate...........................................................................11 Skeletochronology ......................................................................................................14
2 THE USE OF GOPHERUS POLYPHEMUS FOR BASELINE DATA....................17
3 COLLECTION OF GOPHERUS POLYPHEMUS DATA ........................................22
4 GOPHERUS POLYPHEMUS BONE TESTING......................................................31
Humerus Growth Mark Counts and Distance Measurements ....................................32 Scute Annuli and Shell Length Assessment ...............................................................36 Fossil Humerus Growth Line Counts and Distances..................................................43 Fossil Tortoise Shell Measurements...........................................................................45
5 USE OF DIFFERENT BONES IN SKELETOCHRONOLOGY..............................47
Comparison between Skeletochronology and Other Techniques for Aging ..............49 Skeletchronology in the Known Age Sample of Geochelone elegans .......................52 Fossil Tortoise Humerus Counts and Shell Measurements ........................................52
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6 SKELETOCHRONOLOGY AS AN ACCEPTABLE TECHNIQUE OF AGING MODERN AND FOSSIL TORTOISES ....................................................................56
Skeletal Elements Used in Skeletochronology ...........................................................58 The Use of Captive-Raised Individuals and Skeletochronology................................58
REFERENCES ..................................................................................................................60
BIOGRAPHICAL SKETCH .............................................................................................66
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LIST OF TABLES
Table page 2-1 Fossil tortoise specimens, identifications, and locality information. .......................21
4-1 Gopherus polyphemus identification number, sex, visible MSG counts for each bone, and side tested.................................................................................................32
4-2 Gopherus polyphemus age estimates based on the protocol published by Castanet and Cheylan (1979). .................................................................................................34
4-3 Gopherus polyphemus growth estimates using the resorption protocol suggested by Parham and Zug (1997)......................................................................................35
4-4 Gopherus polyphemus age estimates based on scute annuli counts and both skeletochronology protocols employed....................................................................36
4-5 Gopherus polyphemus age estimates based on Landers et al. (1982) plastron measurements compared with skeletochronology estimates....................................40
4-6 Gopherus polyphemus age estimates based on Mushinsky et al. (1994) carapace lengths compared with skeletochronology estimates. ..............................................42
4-7 Gopherus polyphemus shell dimensions and the estimates based on the.................43
4-8 Fossil tortoise age estimates determined using the Castanet resorption model .......44
4-9 Carapace and plastron lengths of fossil tortoises compared with skeletochronology age estimates. .............................................................................46
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LIST OF FIGURES
Figure page 1-1 Map of northwestern Nebraska field area. .................................................................3
1-2 40Ar/39Ar Dating of the White River Group ...............................................................6
1-3 Stratigraphy of the White River Group at Toadstool Park, NE .................................7
1-4 Paleoenvironment of Late Eocene badlands of South Dakota .................................15
1-5 Paleoenvironment of Early Oligocene badlands of South Dakota ...........................16
3-1 Measurement of scute annuli on the plastron...........................................................26
3-2 A mid-dyaphseal cut is made on the humerus..........................................................29
4-1 Parham growth estimations plotted against annuli counts. ......................................37
4-2 Castanet growth estimates plotted against annuli counts. ........................................37
4-3 Gopherus polyphemus age estimations based on plastron lengths.......................... 39
4-4 Parham age estimates plotted against plastron lengths. ...........................................40
4-5 Castanet age estimates plotted against plastron lengths...........................................41
4-6 Gopherus polyphemus age estimates based on carapace length ..............................41
4-7 Parham age estimates plotted against carapace lengths. ..........................................42
4-8 Castanet age estimates plotted against carapace lengths..........................................43
5-1 Slides depicting ilium (left) and scapula (right) cross-sections. ..............................47
5-2 DJE-2002-1 humerus thin section with arrows showing open vacuities. ................51
5-3 RF-NeOrel-74 humerus thin section with arrows showing well-defined MSG.......53
5-4 DE-2001-17 humerus thin section showing high level of remodeling.....................54
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Abstract of Thesis Presented to the Graduate School
of the University of Florida in Partial Fulfillment of the Requirements for the Degree of Master of Science
SKELETOCHRONOLOGY AS A METHOD OF AGING OLIGOCENE Gopherus laticuneus AND Stylemys nebrascensis, USING Gopherus polyphemus AS A MODERN
ANALOG
By
Dana Joseph Ehret
May 2004
Chair: Bruce J. MacFadden Major Department: Geological Sciences
The use of skeletochronology in many reptile groups has become a common
method of incremental growth analysis over the last 20 years. With the exception of sea
turtles, this method has been largely overlooked as a feasible alternative to scute annuli
counts or carapace lengths in turtles and tortoises. Incremental growth layers in sea turtles
have been correlated to annual growth cycles. In thin bone sections, a light, wide band
represents a season of rapid growth; and a thin, dark band represents a season of slow
growth or stasis, making up a single year’s growth. Growth layers are analyzed by taking
determined-thickness thin sections from humeral shafts of specimens.
The discovery of an unusually rich assemblage of fossil tortoises in northwestern
Nebraska warranted study of the skeletochronology at this site. Incremental growth rings
are a viable option in this case for individual age determination, as carapace lengths are
not preserved well in the fossil record. The two species in question, Gopherus laticuneus
and Stylemys nebrascensis, were all collected within the White River Group of the central
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United States. Individual bones were prepared, and thin-sections were prepared to
estimate the tortoises’ ages. Before thin sectioning fossil materials, a modern analog
(Gopherus polyphemus) was tested to determine the validity of methods used. This
modern example shows enough similarities in size and presumed environmental
conditions to provide a good comparative analog.
Data collected from G. laticuneus and S. nebrascensis is applied to determine age
structure of the populations at the site. Information gathered from G. polyphemus will
provide the groundwork for further exploration of the technique of skeletochronology and
its use with other groups of organisms.
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CHAPTER 1 INTRODUCTION
The task of aging long-lived chelonian species has been a continuing problem for
scientists as long as the species have been studied. Numerous techniques have been
devised to accurately estimate the probable age of wild and captive raised individuals.
While some of these methods have been found to be more successful than others, no
method has been able to consistently predict accurate age estimates for individuals. More
popular methods cited by other researchers include mark-release-recapture, scute annuli
counts, carapace/and or plastron measurements, scute wear assessments, and skeletal
changes (Zug 1991). However, without known-aged individuals as a reference, no
method of age estimation is precise.
Another way to estimate age for some reptilian and amphibian species is
skeletochronology. This method (by which incremental marks of skeletal growth (MSG)
can be counted in a cross-section of a long bone) has been proven to be a reliable age
indicator in some species. While this technique has been used extensively in other taxa,
it has never been used in Gopherus polyphemus or any fossil chelonian species.
It is my intent to evaluate the use of skeletochronology as a viable technique to
estimate the ages of the fossil tortoise species Gopherus laticuneus (Cope), Stylemys
nebrascensis (Leidy) and the extant tortoise species Gopherus polyphemus (Daudin).
Skeletochronology data collected in this study were also cross-referenced with two other
aging techniques, to compare similarities and differences in the methods. Finally,
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plausibility and the extent to which skeletochronology may be implemented were also
addressed.
Gopherus laticuneus and Stylemys nebrascensis are common in the White River
Group badlands of the North American High Plains. Both species have a geologic range
spanning the Chadronian/Orellan (Eocene/Oligocene) boundary interval (Hutchinson
1992, 1998; Prothero and Swisher 1992). They were chosen because of the excellent
preservation of fossil materials and the abundance of available specimens.
Gopherus polyphemus represents the modern analog. It is found exclusively in the
southeastern United States, ranging from southern South Carolina south to Dade County,
Florida; and west to the eastern portion of Louisiana (Auffenberg and Franz 1982; Franz
and Quitmyer In press). This species was chosen because of its close relationship to the
fossil Gopherus species, the relative similarity between the modern tortoise’s
environment and the proposed paleoenvironment of the fossil species, and the relative
abundance and accessibility of materials.
Importance of this Research
The objective of this project is to test the validity of skeletochronology as an
accurate measure for aging tortoises, both fossil and extant. While this method has been
used in some amphibians, reptiles, dinosaurs, mammals and even birds,
skeletochronology has been largely overlooked for aging tortoises. The few published
studies using tortoises mainly reveal positive results (Grubb 1971; Castanet and Cheylan
1979; Germano 1988). Having an accurate method for aging tortoises is extremely
important in demographic studies. Information on age at sexual maturity, maximum age
in the wild, and growth differences between sexes can all be deduced using
skeletochronology.
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Another aspect that could be examined in the fossil record is why Stylemys went
extinct and why Gopherus evolved at this time interval. As previously discussed, the
climate and the environment changed distinctly over the Eocene-Oligocene boundary.
The fossil record also shows a decrease in the genus Stylemys shortly after the boundary
and an increase in the number of Gopherus specimens present. Skeletochronology may
lend assistance in determining why this change in genera occurred.
Overview of the Nebraska Badlands
The White River Group is made up mainly of volcaniclastic, fluvial, eolian and
lacustrine sediments that have accumulated across the mid-continent of North America
from the late Eocene to the early Miocene (37 to 29 million years ago.) Outcrops of these
stratigraphic units are most commonly seen in Nebraska, South Dakota, Colorado,
Montana, and Wyoming (Terry et al. 1998).
Figure 1-1. Map of northwestern Nebraska field area (Terry and LaGarry 1998; Figure 4 on page 124).
The Chadronian/Orellan boundary, which coincides with the Eocene-Oligocene
transition, has been placed at 33.59 + 0.02 Ma (Prothero 1994; Obradovich et al. 1995;
Terry 1998). The type section for the Orella member lies in outcrops near Toadstool Park
in Sioux and Dawes counties of northwestern Nebraska. The outcrops form the base of
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the Pine Ridge escarpment throughout the area, and are a result of regional uplift during
the Laramide Orogeny. Subsequent uplift during the Cretaceous resulted in the retreat of
the Cretaceous Interior Seaway, exposing and weathering Cretaceous-age sediments. The
altered late Cretaceous Pierre Shales occur at the base of the White River Group, and are
unconformably overlain by the Chadron and Brule formations (the latter consisting of the
Orellan, and Whitneyan members). In northwestern Nebraska, the Arikaree Group
overlies the Whitney member. In most exposed areas, the White River Group is overlain
by more-resistant brown siltstone and sandstone layers, which form buttes and tables, or
steep sloping spirals across the outcrop (Terry 1998).
The Chadron Formation of northwestern Nebraska is divided into two distinct
layers based on lithology, color, and erosional surfaces. The lower unit, known as the
Peanut Peak Member, is predominantly composed of a bluish-green to gray hummocky
mudstone. The smectite-rich layer can be up to 8.65 m. thick, and weathers into haystack
like hills that have a characteristic popcorn-like surface (Terry 1998).
The upper layer of the Chadron is composed of variegated silty claystone, siltstone,
and isolated channels of sandstone bodies (Terry and LaGarry 1994; Terry 1995, 1998;
Terry et al. 1995). The Big Cottonwood Creek Member, as named by Terry and LaGarry
(1998), contains various purplish-white layers that are composed of gypsum, volcanic
ash, and limestone (Schultz and Stout 1955). The uppermost portion of the Big
Cottonwood Creek Member also coincides with the Eocene-Oligocene boundary at
approximately 34 million years ago.
The division between the Chadron and the overlying Brule formations can be
marked by a change in lithology, and has been dated by 40Argon /39Argon dating and can
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be seen in Figure 1-2 (Swisher and Prothero 1990). Sediments change from a variegated
silty mudstone and claystone; to a tan and brown clayey siltstone, siltstone, sheet
sandstone, and channel sandstone complex. Schultz and Stout (1955) originally
separated the Chadron and Brule formations by the “Persistent White Layer” or “Purplish
White Layer” (PWL), which is composed of volcanic ash, or tuff. After more careful
analysis, the actual separation occurs 10-15 meters above the PWL (Swisher and Prothero
1990; LaGarry 1998).
Dating of ash layers has provided accurate ages for the different members of the
Brule Formation. A detailed geochronology of the Eocene-Oligocene boundary was
decided upon at a special meeting at Gubbio and Massignano, Italy, in the late 1980s.
Based on the decisions made at that meeting, Swisher and Prothero (1990) were able to
publish an agreed upon date of the Oligocene ash layers. Previously 40Ar/39Ar dating of
biotite extracted from the PWL yielded an age of 33.59 + 0.02 million years ago (mya).
The correct Eocene-Oligocene boundary is now located 10 to15 m. above PWL and has
been recalibrated at 33.7 mya. The Orellan-Whitneyan boundary has been shifted to 32.0
million years ago, and the Whitneyan-Arikareen boundary has been placed at 20.0 mya
(Prothero and Whittlesay 1998).
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Figure 1-2. 40Ar/39Ar Dating of the White River Group (Swisher and Prothero 1990; Figure 1 on page 761).
The lower unit of the Brule Formation in northwestern Nebraska is formally known
as the Orellan member. Two distinct zones can be distinguished across the exposed
outcrop. The lower layer contains brown-orange and brown volcaniclastic clayey
siltstones and silty claystones, sheet sandstones, and a distinct volcanic ash (known as the
serendipity ash.) The upper layer consists of single and multistoried channel sandstones
(LaGarry 1998).
The upper unit of the Brule Formation is named the Whitney member. Like the
Orellan member, the Whitney is also divided into two distinct layers, both of which are
composed mainly of sandstones and siltstones. The upper layer contains the upper and
lower Whitney ashes. The lower ash layer is above the boundary between the Whitneyan
and Orellan. This boundary is characterized by intertonguing ash except where the
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Whitneyan channel cuts dip down into the upper Orellan, which can be seen in Figure 1-3
(LaGarry 1998).
Figure 1-3. Stratigraphy of the White River Group at Toadstool Park, NE (Terry and LaGarry 1998; Figure 9 on page 133).
Based on paleosols studied from Badlands National Park, South Dakota, the White
River Group represents an extensive alluvial plain (Retallack 1983). Reddish-brown
paleosols found in the late Eocene are thought to be a result of sediment accumulations
along the banks of rivers during this period. Most paleosols are eroded, redeposited
materials that were reworked by an extensive alluvial system that was present in this area.
More sedimentation is thought to have occurred in areas that were sparsely vegetated as
opposed to heavily wooded areas surrounding streams. Retallack figured that sparse
vegetation allowed for more sedimentation/erosion to occur, with wooded areas being
more stable.
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Fossil root and seed traces during this period represent a habitat dominated by
herbaceous vegetation. As drying continued throughout the Orella and Whitney
members, shrub dominated plains became more prevalent with woodlands becoming
more concentrated around streams. Woody plants indicative of this time period include
the hackberry (Celtis hatcheri), for which fossilized seeds have been recovered.
(Retallack 1983).
Modern Gopherus polyphemus Samples
I used samples for thesis work, from gopher tortoises only found in the north-
central portion of Florida. The northern-most samples were collected in High Springs,
Florida and the southern most samples were collected near Melbourne, Florida. Samples
were also collected from Rattlesnake Island in the Fort Matanzas National Park near St.
Augustine, Florida. Traditionally, these tortoises are found in sandy upland areas of pine
(Pinus spp.) and oak (Quercus spp.) with an under story of wiregrass (Aristida spp.),
beach scrub, oak hammocks, or pine flatwoods (Auffenberg and Franz 1982; Ernst et al.
1994). Annual precipitation levels over the range of G. polyphemus are between 1162-
1593 mm. (Germano 1994).
Gopherus polyphemus is an avid burrower and may keep several burrows active at
any given time. Active and abandoned burrows are used, not only by the tortoise, but
also by a host of other vertebrate and invertebrate species. In Florida, tortoises are active
most of the year, retreating to their burrows at night and only coming out for portions of
the day. When they are above ground, G. polyphemus spends most of its time basking
and searching for food or feeding (Smith 1992; Ernst et al. 1994). Although there is little
evidence on the longevity of G. polyphemus, captive raised G. berlandieri (the Texas
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tortoise) have been documented at ages exceeding 52 years of age (Judd and McQueen
1982).
Fossil Tortoise Background
Tortoises do not have a very long fossil record when compared to other chelonian
groups. Tortoise origins probably lie in the mid Eocene (50 mya) with the fossil genus
Hadrianus. Specimens have been found across North America and Europe. The genus is
probably very closely related to the modern genus of Manouria (Auffenberg 1974; de
Broin 1977; Hutchinson 1980; McCord 2002). While turtles in general are relatively
abundant in the fossil record, complete specimens (including skulls, shells, and limbs)
that allow proper identification are extremely rare. Therefore, the precise taxonomic
placement for Hadrianus is unknown. This genus was probably a subtropical group that
originated in Asia and dispersed to North America. By the late Eocene, the genus
Stylemys and possibly Gopherus split from Hadrianus and begins a radiation that
continues for millions of years.
The genus Stylemys encompasses a number of species that span from the late
Eocene through the Miocene (40 to 10 mya; McCord 2002). Stylemys nebrascensis is
one of the most common turtle fossils in North America. It was the first fossil turtle
described in the United States by Joseph Leidy in 1851 (Hay 1908, Hutchinson 1996).
Specimens have been found throughout North and South Dakota, Wyoming, Colorado,
and Nebraska for over 150 years. The geologic range of the species occurs in the
Chadron Formation through the Orellan member of the Brule Formation, which samples
a period of 4 to 5 million years between the late Eocene and early Oligocene.
Stylemys is defined by a number of diagnostic characteristics, which can be
observed in all relatively complete specimens. Instead of listing all of the characteristics
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that are species specific, I will only use those that aided me in identification of species.
Distinguishing Features: The normal neural formula for the species = 4(6(6(6(6(6(6(6 or
4(8)4(6(6(6(6(6. The number after the parentheses is indicative of the number of sides
per neural bone starting from the first neural. In all specimens the posterior epiplastral
excavation is shallow or absent (Auffenberg 1964). The nuchal scale is longer than it is
wide. The anterior lobe of the plastron is wider than it is long. Also, the shape of the
humeral head in Stylemys is compressed dorso-ventrally in adults (Auffenberg 1964). A
proportionately thicker and more rounded shell is diagnostic of the species (Hay 1908;
Hutchinson 1996). The carapace of these individuals may reach or exceed lengths of 530
mm. Finally, the square, boxed-off shape of the gular projection is extremely different
from that of Gopherus.
The genus Gopherus first appears in the fossil record during the late Eocene (about
34 mya) with Gopherus laticuneus. Although it is unknown if the genus is descended
from Stylemys or from an as-yet determined ancestor, the genus did overlap with Stylemys
nebrascensis and they do share a number of similar characteristics (Hay 1908;
Auffenberg 1964). Traditionally, both species have been very closely linked because
both have the shared-derived character of having a premaxillary ridge in their upper jaw.
Unfortunately, as stated earlier, tortoise skulls are quite rare in the fossil record and a
more comprehensive and conclusive studies need to be undertaken. While the presence
of a premaxillary ridge is a derived character in most tortoises it may be a primitive
character in North American tortoises (Crumly 1994; McCord 2002). Gopherus
laticuneus is the most primitive species of the genus, which includes four extant species
(G. polyphemus, G. flavomarginatus, G. berlandieri, and G. agassizii). It has been
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placed as a separate subgenus Oligopherus (Hutchinson 1996). McCord (2002),
however, feels that this change needs to be tested before this arrangement is accepted
relationships of this new clade have not been tested and the assignment is based on a lack
of characters rather than a presence of characters. More traditional views of the species
place it as a more basal form to all other species of the genus that proceed in time
(Bramble 1971; McCord 2002).
The following characteristics that define Gopherus laticuneus can easily distinguish
specimens from those of S. nebrascensis. Distinguishing features: The normal neural
formula found = 6)6)4(6(6(6(6(6 or 4(8)4(6(6(6(6(6. The posterior epiplastron
excavation is relatively shallow (Hutchinson 1996). In contrast to Stylemys, the nuchal
scale of G. laticuneus is short and rather wide and the shell is generally much thinner.
Another suite of characteristics, that are found in most specimens are overly pronounced
and toothed epiplastral extensions (or beaks) as well as extended and toothed xiphiplatra
in the plastron.
Paleoenvironment and Paleoclimate
The use of skeletochronology relies on seasonal cycles to preserve marks of
skeletal growth (MSG). Therefore, information on the paleoclimate during the Eocene-
Oligocene transition is important to my thesis. Seasonal variation is very important for
production and definition of MSG (Castanet and Smirina 1990). The Eocene-Oligocene
transition throughout the geologic record shows a major shift in climatic conditions.
Work completed on paleosols from the Big Cottonwood Creek member (late Chadronian)
show a gradual change from humid, forested conditions to more seasonal, semi-arid
conditions occurring in the early Oligocene (Terry 2001). This change was originally
interpreted as the “Terminal Eocene Event” when it was first detected. After redefinition
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of the Eocene-Oligocene boundary, the event has now been termed the “Early Oligocene
Event” (Prothero and Heaton 1996; Terry 2001).
Marine sediments from this period present a large shift in the oxygen isotope
record, which may reflect an overall cooling period in the early Oligocene (Shackleton
and Kennett 1975; Miller 1992; Zachos et al 1992; Prothero 1994; Zachos et al. 2001). A
positive shift in the oxygen isotope record of 1.3 parts per million (ppm.) has been
recorded in benthic foraminifers. Miller (1992) has deduced that 0.3-0.4 ppm. of the shift
may be due to an increase in Antarctic ice at this time, with the other 1.0 ppm. of change
being a result of a decrease in the global temperature. It is speculated that the
temperature of the badlands region in the early Oligocene around 16 oC, which is a
decrease from an Eocene greenhouse (Berggren and Prothero 1992). Ice was present on
Antarctica in the early Oligocene as determined by ODP ice cores that were taken on the
continent in the late 1980s. Although the amount global ice volume is still debatable
during the Oligocene, there was ice in the region as early as 33 million years ago (Zachos
et al. 1992).
Carbon isotopes during this period also show evidence of deep-ocean circulation
patterns in the early Oligocene. Miller (1992) has shown that pulses of cold, nutrient-
depleted water began circulating toward the south from the Arctic and cold, nutrient-rich
Antarctic water began circulating toward the north from the south. These deep-water
flow patterns have also been indicated by unconformities at the Eocene-Oligocene
transition in marine geologic records (Prothero 1994). All of these changes in ocean
circulation, ice, and resulting changes in sea level drastically affected the climate
globally, as can be demonstrated in the fossil record of North America.
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Land plants during this period have been used to demonstrate the continental
temperature shift across the Eocene-Oligocene period. Using a leaf margin index, Wolfe
(1992) shows a significant temperature drop occurring in the early Oligocene. Fossil leaf
impressions after the cooling tend to be a lot smaller than pre-cooling leaves, post-
cooling leaves tend to have jagged margins rather than the smooth margins of earlier
samples, and a distinct change from tropical to more deciduous trees has been noted.
Work by Wolfe (1978, 1992), suggest a mean annual temperature shift in North America
of 8-12 degrees Celsius in less than a million years (Prothero 1994).
Reptile and amphibian records show a decline in the number of species at this time
due to the cooling and drying trends. Hutchinson (1982, 1992, 1996) has shown that the
diversity of most aquatic reptiles and amphibians (including freshwater turtles,
crocodiles, and salamanders) drop off severely at the end of the Eocene. Tortoises,
however, being more adapted for life on land and drier climates, continue to be
commonplace in the early Oligocene. As mentioned previously, Stylemys nebrascensis
evolved during the middle to late Eocene although it does not become common until the
Eocene-Oligocene boundary. Gopherus, on the other hand, did not evolve until the latest
Eocene and can be found in the upper Chadron and lower Brule Formations. Bramble
(1971) and McCord (2002) suggest that Stylemys is a more mesic-adapted species, while
Gopherus is a more xeric-adapted species.
Retallack (1983, 1992) has taken the work of Wolfe a step farther and has used
paleosols from the badlands of South Dakota and Nebraska to speculate on the
paleoenvironment of the early Oligocene. Paleosols from the Chadron Formation of the
late Eocene represent dense canopies of trees and an annual rainfall ranging from 500-
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900 mm. per year (See Figure 1-4). After the Oligocene deterioration, however,
paleosols of the Brule Formation are more representative of open woodlands and show
annual rainfalls of less than 500 mm. per year (See Figure 1-5) (Prothero 1994).
Root traces also indicate a thinning of the forests during this period. Whereas the
badlands area was a dense forest in the late Chadronian, then became more open, shrub
dominated plains in the early Oligocene. Retallack (1983, 1992) has reconstructed an
early Oligocene that was mainly dry, open savanna woodland cut by a number of braided
streams. Trees were scattered and separated by large areas of shrubs.
Skeletochronology
Skeletochronology is a method by which an estimate of the age of an individual can
be determined from cyclic skeletal growth. As a skeletal element grows throughout the
life of an individual, new layers of bone are added onto its outer surface. Knowing that
these periosteal layers are annual, they can then be counted to estimate the age of the
individual in question (G. Erickson, pers comm). Layers can be broken into new growth
zones (MSG) and lines of arrested growth (LAG).
In many ways this technique can be compared with dendrochronology, where rings
are counted in the trunk of a tree to determine its age. The drawback with
skeletochronology, however, is the ability of bone to resorb and redeposit layers from the
core of the bone outward. This leaves the researcher with an age minimum if resorption
is not accounted for (Parham and Zug 1997). Thus, it is extremely difficult to age long-
lived individuals unless one accounts for resorption. Refer to Francillon-Viellot et al.
(1990) for a more complete review of the mineralization of skeletal tissues and
skeletochronology.
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Figure 1-4. Paleoenvironment of Late Eocene badlands of South Dakota (Retallack 1983; Figure 41 on page 49).
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Figure 1-5. Paleoenvironment of Early Oligocene badlands of South Dakota (Retallack 1983; Figure 42 on page 51).
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CHAPTER 2 THE USE OF GOPHERUS POLYPHEMUS FOR BASELINE DATA
Baseline data were collected from extant tortoises before fossil specimens were
sectioned for this project. The purpose for using modern Gopherus polyphemus was to
determine if skeletochronology would be a viable method before cutting rare fossil
specimens. Gopherus polyphemus was chosen as a modern analog for the following
reasons: 1) although they are a species of special concern in Florida, carcasses are still
relatively abundant, 2) they are closely related to the fossil species used in this project,
and, 3) in a previous study, a closely related species (Gopherus agassizii) provided
positive results for age determination (Germano 1988).
Some authors have recommended the use of long bones (i.e., humerus and/or
femur) for skeletochronology while others have suggested using vertebrae, sclerotic
rings, teeth (etc.) (Zug 1991). Therefore, I attempted to use a number of different skeletal
elements to determine which would be the most advantageous to my research. It should
also be noted that bones were taken from both the left and right sides of the individuals.
Consistency is important to research and ideally individual bones from a given side of the
body should be used, however most specimens were incomplete and alternating bones
were used. This will not hinder my analysis, as all bones in the animals’ body will grow
at a steady rate (G. Erickson pers. comm). I also tested this notion on one of my
specimens; for DJE-2002-3, both left and right humeri were sectioned and both
consistently showed the same number of growth marks. Sets of bones from G.
polyphemus specimens were chosen for sectioning. Humeri, femora, scapulae, ilia,
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andvertebrae were collected, sectioned and examined for marks of growth. Initially, I
predicted that bones from the pelvic or shoulder girdle might prove better for my research
because those elements are preserved more regularly in fossil specimens. Articulated
girdles tend to remain within the shell of dead specimens and provide for a better chance
for preservation (personal observation). Upon examination of the scapula and ilium, they
did have growth marks but, samples were found to have undergone more resorption and
remodeling than other bones. Vertebrae were also highly remodeled and a majority of
the growth marks were partially, or not visible. The humerus and femur proved the most
effective in maintaining growth marks with the least amount of resorption and
remodeling.
Based on the results of the initial evaluation of MSG, the humerus became the
focus for this project. The decision between the humerus and the femur was based on the
availability of material. In both modern and fossil samples, there were more humeri than
femora available. Nevertheless, counts of growth marks in all bones that were recorded
will be included below.
In addition to the use of modern G. polyphemus materials, I was also given a single
sample of a known age Geochelone elegans, Indian Star tortoise, which had been raised
in captivity by Ray Ashton. It was my hope that this known-age specimen could verify
skeletochronological counts in other specimens. The humerus was sent along with the
rest of the G. polyphemus specimens to be sampled.
Another advantage in using the modern gopher tortoise for this project is that there
are more possibilities for parallel age estimates based on other methods of age calculation
(Halliday and Verrell 1988). The most beneficial specimens would have been known-age
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individuals (Castanet and Smirina 1990), unfortunately no such samples of G.
polyphemus could be located and I had to rely on other techniques.
Scute ring counts have been used quite extensively in research involving
chelonians. They are thought to be annual in most species and can be easily seen and
counted. The drawbacks, however, include: loss of rings due to excessive wear, false
rings being counted as annuli, and older individuals become difficult to age because of
the closer spaces of the rings on the scute (Germano 1988). For this study, scute annuli
provided me with a method to evaluate and cross-compare the age estimations I have
made based on skeletal growth marks.
Scute annuli counts were accurate for most of the specimens, however one
individual could not be aged using this technique. One large, gravid female proved to be
too old and its scutes were too worn to count. Due to this problem, I decided to also
evaluate age estimates with another method that is used regularly in studies of chelonians.
Measuring straight-line carapace and/or plastron length has been used by a number of
investigators to correlate size and age (Landers et al. 1982; Mushinsky et al. 1994). This
can also be a reliable method of aging turtles given the proper circumstances. There are a
number of drawbacks and restrictions however, that should be addressed.
Given that chelonians are ectotherms, size can vary based on the environment
experienced by different populations. Average temperature, rainfall, vegetation levels,
nutrition, etc. can all influence the growth rates of individuals (Gibbons 1976).
Therefore, carapace and plastron lengths will vary from population to population
throughout a given range. Plastron lengths in gopher tortoises are very limiting for
another reason. The epiplastral extension (beak) of gopher tortoises is a highly variable
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feature on an individual basis. Males tend to have a longer projection than females,
although this is not a rule. Plastron length can be measured but its use in estimating age
is suspect (Mushinsky et. al. 1994).
Carapace lengths tend to be more precise than plastron length for age
reconstruction however, estimates are still relative and not absolute. Straight-line
carapace length is a popular method among researchers. However, the drawbacks
mentioned previously should be kept in mind and individuals from different populations
should not be compared to one another unless they share a common geographic range/ or
environment.
Testing Gopherus laticuneus and Stylemys nebrascensis for Marks of Skeletal Growth
Based on results from work done with G. polyphemus, the humerus was chosen for
the fossil research. I prepared the fossil specimens in the Vertebrate Paleontology prep
lab at the Florida Museum of Natural History (FLMNH). Table 2-1 shows all the
samples collected and the localities from which they came. After samples were
embedded, cut, and polished they were examined for marks of skeletal growth. The
fossil specimens showed growth marks similar to those documented in G. polyphemus.
The growth marks analyzed within the long bones of the fossils were compared to age
estimates based on plastron and carapace lengths. Scutes do not preserve in the fossil
record because they are keratinous. As such, scute annuli counts are not an option when
working with fossil species. Measurements of shell dimensions can be compared;
however, there are no known shell length-age classes for these species. The lengths
recorded and compared in this study are the first documented comparison of shell lengths
and age in these fossil tortoise species.
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In the G. laticuneus and S. nebrascensis specimens the plastron of individuals tends
to preserve better in the fossil record than the carapace. Deformities in the fossilization
process tend to compress and misshape the carapace in fossil tortoises (personal
observation). In many cases, shell length estimates had to be addressed. In the fossil
specimens, available shell fragments were compared with specimens that were better
preserved. Therefore, a majority of fossil tortoise shell estimates of length are not exact,
but still provide valuable information.
Table 2-1. Fossil tortoise specimens, identifications, and locality information. Specimen Species Locality
DE-2002-1 G. laticuneus Horse Hill Low DE-2002-2 Unknown Horse Hill Low DE-2002-3 G. laticuneus Horse Hill Low DE-2002-4 S. nebrascensis Horse Hill Low DE-2002-5 S. nebrascensis Horse Hill Low DE-2002-6 Unknown Horse Hill Low DE-2002-7 S. nebrascensis Bald Knob High DE-2002-8 G. laticuneus Bald Knob High DE-2002-9 Unknown Sagebrush Flats DE-2002-10 G. laticuneus c.f. Sagebrush Flats DE-2002-11 G. laticuneus Sagebrush Flats DE-2002-12 S. nebrascensis Sagebrush Flats DE-2002-13 S. nebrascensis Sagebrush Flats DE-2001-14 S. nebrascensis Turkeyfoot East High DE-2002-15 S. nebrascensis Orellan Pasture 33B low DE-2001-16 S. nebrascensis II #2 Pasture 33B low DE-2001-17 G. laticuneus c.f. Pasture 33B low UF 20975 G. laticuneus Unknown UF 191470 S. nebrascensis Turkeyfoot East High UF 201906 S. nebrascensis Sagebrush Flats #2
RF-NE-Orel-37 S. nebrascensis Turkey Foot RF-NE-Orel-74 G. laticuneus Pettipiece west in Basin RF-NE-Orel-39 Unknown Turkey Foot above PWL RF-NE-Orel-42 G. laticuneus Turkey Foot RF-NE-Orel-66 S. nebrascensis Turkey Foot East RF-NE-Orel-12 S. nebrascensis Bald Knob East Butte (N. face)
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CHAPTER 3 COLLECTION OF GOPHERUS POLYPHEMUS DATA
The remains of Gopherus polyphemus specimens came from private collections as
well as carcasses that were collected by Richard Franz and myself. The FLMNH
collections were not available for study due to the destructive nature of the
skeletochronology process. As a result, under the FLMNH Florida Fish and Wildlife
Conservation Commission collection permit #WS01058 I was able to salvage carcasses
that were either, mortally wounded on roads, killed by predators, or burned in wildfires.
Two adult males and a hatchling were loaned from the Chelonian Research
Institute in Oviedo, Florida, under the direction of Peter Pritchard. One female and one
juvenile were collected by Karen Frutchey, a graduate student at University of Central
Florida, in the National Archie Carr Reserve near Melbourne, Florida. Franz and I
collected three road kill females on roads in Alachua County. Boyd Blihovde (a park
ranger from Wekiwa Springs, near Orlando, Florida) donated another road kill female.
Dick Franz and I collected the remaining carcasses on Rattlesnake Island within the Ft.
Matanzas National Park at St. Augustine, Florida. This was in conjunction with Dave
Parker, a ranger at the park, and Federal Permit #FOMA-2002-SCI-0001. Ray Ashton
also donated one specimen of a known-age Geochelone elegans.
Before bones could be measured and sectioned all individuals needed to be
prepared. Some of the carcasses collected were skeletonized either naturally or by
them in screen cages outside for a period of 6 weeks. Individuals were then rinsed in a
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weak solution of industrial strength soap or bleach and scrubbed with a soft brush to
remove any remaining tissue. Bones were then dried under a heat lamp.
All individual bones were then measured for length and width. The diameter of the
dyaphseal shaft of the humerus is especially important when estimating resorption of
growth lines in thin section. However, there is no correlation between individual bone
size or length and age (Castanet and Cheylan 1979).
For preparation of the thin sections, all samples were sent to Matson’s Laboratory,
LLC of Milltown, Montana. Following standard procedures, bones were cut, embedded
in paraffin, and injected with hematoxylin dye (Castanet and Cheylan 1979; Zug et al.
1986; Chinsamy and Raath 1992). The dye is an important aide in making the annual
growth marks more distinguishable. The sections were then embedded in plastic and
mounted on petrographic slides. For further discussion of the technique see the Matson’s
website at www.MatsonsLab.com. Before the slides were returned, Gary Matson
determined age estimates for all specimens by skeletochronology. As for the G. elegans
specimen, the actual age was withheld from both Mr. Matson and me until it could be
analyzed microscopically. This information was withheld to test the validity of
skeletochronology.
Upon receiving the sectioned specimens I independently determined individual age
estimates for all bones. The marks of skeletal growth were identified using a compound
microscope and were counted on two separate occasions. The average of the two counts
provided the age estimates for all individuals. It should be noted that no set of growth
mark counts varied by more than 1-2 lines in between counts, meaning that counts were
consistent. In previous studies, the phenomenon of double rest lines has been observed
http://www.matsonslab.com/
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(Castanet and Smirina 1990). These non-periodic lines, which can be a result of a double
annual growth cycle, were not found in specimens analyzed during this study. In addition
to counting the number of growth marks, I measured the widths of all increments from
the center of the bone.
In order to measure the growth marks and account for resorption, two separate
protocols were employed. First, the method published by Parham and Zug (1997), based
on work done with fish otoliths, was tested. All counts and measurements used growth
marks found on the ventral side of the bone. Due to resorption, growth layers are not
equally spaced around the circumference of the humerus (Parham and Zug 1997). When
looking at a bone in thin section, the growth marks persist longer on the dorsal and
ventral sides of the bone (also known as the short axis). Therefore, I recorded the radius
of the humerus as half the diameter of the resorption core plus the sum of the growth
marks on the ventral half of the bone.
Resorption of growth marks (= periosteal layers) lost into the resorption core of the
bone is a major problem in age estimation. The Parham regression protocol, which is
used by fish specialists, assumes that growth layer width declines with age, and the slope
of a regression curve for the declining growth rate can be identified by using the radius or
diameters of the element at different consecutive ages and the subsequent growth layer
widths from each of these radii (Ralston and Miyamoto 1983; Parham and Zug 1997). To
determine the number of lost layers, the radius of the resorption core is substituted with
the regression equation Eq. 3-1: Radius = hatchling radius + [(slope)*(number of lost
layers)] and the number of lost layers = (radius –hatchling radius)/slope. The number of
lost layers is then added to the number of observed layers to derive an age estimate or
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total number of layers. In bone growth, early periosteal layers tend to be tightly packed
followed by a number of layers that are more widely spaced. These widely spaced layers
continue until the animal reaches sexual maturity, at which point they tend to become
closely spaced again (G. Erickson, pers. comm). The variation in growth line width may
lead to an exaggeration in the number of total growth marks (both present and
reabsorbed) when the mean width is calculated. Therefore, I have found that this method
tends to overestimate age much more so than the second protocol known as the average
layer thickness (Castanet) protocol.
The second protocol is the most commonly used model for estimating loss of
growth marks in reptile and amphibian studies. The average layer-thickness (Castanet)
protocol uses the mean width of the three existing innermost layers, which is then divided
into the radius of the bone’s short axis, which provides an estimate of the number of
resorbed marks (Castanet and Cheylan 1979; Zug et al. 1986; Castanet and Smirina 1990;
Parham and Zug 1997; Erickson and Tumanova 2000). While my findings show this to
be a more appropriate protocol, Parham and Zug (1997) caution that it may yield an
overestimate of growth mark counts because they were evidently not aware of the
closeness of young rings and its impact in their equation.
Scute ring measurements were also collected and correlated with skeletochronology
age estimates. On the shells of many chelonians, concentric rings form on each
individual scute. Many researchers have found that these rings (=annuli) are annual in
some species and can be positively correlated with age up until a given point, usually 20
years of age (Cagle 1946; Sexton 1959; Castanet and Cheylan 1979; Judd and Rose 1983;
Galbraith and Brooks 1987; Germano 1988). The second costal scute of the carapace was
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chosen to count rings following Germano (1988). This scute was chosen for two reasons:
the carapace receives much less wear than the plastron allowing for preservation of scute
annuli and the second costal is much squarer than others, making the annuli easier to
distinguish.
True rings were distinguished from false rings based on descriptions by Legler
(1960) and Landers et al. (1982). Annual rings were counted if they formed a deep
groove around the entire scute, as shown in Fig. 3-1. I made counts on two separate
occasions and the average of the two counts was used as the age estimate. These results
were then matched with the growth mark counts taken from long bones.
Figure 3-1. Measurement of scute annuli on the plastron (Landers et al. 1982; Figure 1
on page 84).
The other set of measurements taken from G. polyphemus specimens includes shell
dimensions from all of the samples. Measurements taken include: straight-line carapace
length (SCL), straight-line plastron length along suture (PL), and the length of
hyoplastron at the suture. Some studies have shown that carapace and/or plastron length
are suitable for age/size relationships (Landers et al. 1982; Mushinsky et al. 1994). The
latter measurement (hyoplastron) was taken in order to check the accuracy of calculating
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carapace length based on plastron elements as published in Franz and Quitmyer (In
press).
Straight-line carapace lengths were recorded by placing large calipers at either end
of the tortoise’s shell at the midline. This measurement was taken instead of the
alternative, which is an over-the-shell measurement using a measuring tape, because of
the increased chance of error in broken or misshapen shells. Plastron lengths were also
recorded in a similar fashion. Large calipers were used to take a straight-line
measurement down the midline suture of the plastron including the gular extension.
Small calipers were used to take measurements of the hyoplastron. Lengths of these
elements were taken down the midline suture as per Franz and Quitmyer (In press).
Collection of Gopher laticuneus and Stylemys nebrascensis Data
I collected the fossil tortoise specimens in the summer of 2001 with the aide of
Bruce MacFadden and volunteers that were on the annual Pony Express trip to the
Nebraska badlands. Specimens were recovered from the property being leased by
Barbara and Reed Toomey and on Forest Service land near Toadstool Park outside of
Crawford, Nebraska (see Figure 1-1). Specimens designated with the field code RF-
NeOrel are on loan from the FLMNH (Nebraska) collection maintained by Richard
Franz. The main sites of collection for the summer 2001 collections include: Horse Hill
Low, Turkey Foot East High, Sagebrush Flats, and Bald Knob High and the Pettipiece
family ranch.
As mentioned previously, all fossil materials are from the Chadronian and Brule
Formations of the White River Group. For verification in the field, the upper purplish
white layer (PWL) was located and only materials above it were collected. Most samples
come from the “turtle-oreodont” zone in the boundary area between the Chadron
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Formation and the Orellan member of the Brule Formation. Fossils were all well below
the Whitneyan-Orellan boundary. This transition is very obvious as there is a distinct
change in sedimentology at the boundary. GPS coordinates were also taken at the site of
each fossil discovery for reference.
Specimens were either bagged or jacketed in the field and transported back to the
FLMNH. Some were photographed in the field, for verification, before collection. I
prepared all specimens to recover humeri, took shell measurements, and identified
individuals to species. Preparations were performed using a dremel tool, dental picks, an
air scribe, and various adhesives in the prep lab at FLMNH with the help of Russ
McCarty.
Before sectioning, fossil bones were measured in the same way that modern
samples were. Specifically, the lengths and widths of bones (or the remaining portions of
bones) were recorded. No discrimination was made as to whether the right or left
humerus was used due to the extreme rarity of fossil tortoise limb bones. Rough cuts
were made on a rock saw prior to embedding to get a clean surface in the mid dyaphseal
shaft (See Figure 3-2). Sections are cut from the mid-shaft to avoid remodeling that may
occur near the proximal or distal end of the long bone (Parham and Zug 1997). Humeri
were then put into molds and embedded in Pour-a-Cast clear plastic. Samples were then
allowed to cure for a few days to ensure hardening.
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Figure 3-2. A mid-dyaphseal cut is made on the humerus (Castanet and Cheylan 1979; Figure 1 on page 1651).
A slow speed Isomet saw made by Buehler was used to cut 1-3 mm sections from
the humeri samples. The plastics used in the embedding process did not allow for finer
cuts, as section warping was visible in thinner samples. Sections were then mounted on
petrographic slides using a two-part epoxy manufactured by Logitech. Slides were then
allowed to cure for a few days before grinding.
Slide grinding was performed at the laboratory of Gregory Erickson at Florida State
University under his guidance. Slides were sanded on tabletop grinders using different
grits in a fining up sequence. A coarser paper (600 grit) was used initially to remove
excess material, and finer papers (800-1200 grit) were used in preceding succession to
remove any coarse grooves or imperfections left behind. For fossil slides, most were
sanded down to a thickness around 100 micrometers or less. Slides were then viewed
under a compound microscope to count and measure growth marks. Measurements were
taken in an identical manner to those described for G. polyphemus.
In addition to the measurements taken from the humeri of the fossil tortoises,
plastron and carapace lengths were also recorded. Plastron lengths were more easily
obtained due to better preservation of the flat elements. Carapace shape and structure
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was not preserved in a number of samples. Therefore, most shell lengths had to be
estimated. Preserved materials were compared to complete specimens in order to
estimate the size of the shells in question.
Both extant and fossil tortoise annual growth mark counts were correlated and
analyzed. Modern G. polyphemus growth mark estimates were matched with scute ring
counts in order to test the validity of both methods. Plastron and carapace lengths were
also matched with growth mark estimates in both fossil and extant species to compare
size-age relationships. Published size-age correlations were used to estimate ages of
individuals in this study (Landers et al. 1982; Mushinsky et al. 1994).
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CHAPTER 4 GOPHERUS POLYPHEMUS BONE TESTING
To test the validity of different bones and because of the constraints of available
materials, I decided to test a number of skeletal elements. A selection of bones, including
the humerus, femur, scapula, ilium, and vertebra, was chosen to represent all different
aspects of the skeleton. Results show that the humerus and femur are the best bones for
gopher tortoise skeletochronology. Table 4-1 shows all counts of visible skeletal growth
marks made in the different bones of G. polyphemus that were sent to Matson’s
Laboratory for sectioning.
Table 4-1 also shows the sex of each individual, although juveniles cannot be
sexed. A series of Gopherus polyphemus specimens including: four adult males, four
adult females, five juveniles, and a hatchling were sectioned to test the viability of
skeletochronology in a tortoise population. Under each element heading, the number of
visible growth marks are shown and the side from which the skeletal element is
identified. It should also be noted that in specimen DJE-2002-3, I sampled both the left
and right humeri to test the variability between left and right sides. In this specimen, both
the left and right humerus showed the same number of visible growth marks.
While Matson’s provided interpretations of growth marks in vertebrae, I was
unwilling to commit to those counts after a personal inspection. There is a very high
degree of resorption and remodeling in the tortoise vertebrae that is unparalleled in other
elements. I assert that vertebrae are not good indicators when performing
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skeletochronology in Gopherus polyphemus, which also probably holds in other
chelonian species.
The one sample of G. elegans was also included in Table 4-1. Skeletochronology
counts and scute annuli were both compared. Unfortunately, due to the climatic
conditions in which this specimen was held, the results were not at all meaningful. The
individual was kept in an artificial summer-like climate year round to enhance growth,
thereby excluding any seasonal cyclity.
Table 4-1. Gopherus polyphemus identification number, sex, visible MSG counts for each bone, and side tested.
Specimen Sex* Humerus/Side Femur/Side Scapula/Side Ilium /Side Vertebra
DJE-2002-1 F 18 left 21 right 17 right 21 left 9-11 ringsDJE-2002-2 M 10 right 11 right 7 right 8 right 10-12 ringsDJE-2002-3A F 9 left 6 left 7-9 rings DJE-2002-3B 9 right 13 right 6 right DJE-2002-5 M 7 right 6 right 7 right 7 right 5-7rings DJE-2002-6 J 3 right 0 right 0 right 0 right 0-1rings DJE-2003-9 J 6 right 7 left 6 right 8 right N/A DJE-2003-10 J 6 right 8 left 4 right 7 right N/A DJE-2003-12 F 8 right 7 left 5 right 7 right 3-5 rings DJE-2003-14 J 7 left N/A 6 right 7 right 8-10 ringsDJE-2003-15 F 7 right 6 right 6 right 5 right N/A DJE-2003-16 J 10 right 7 right 5 right 4 left N/A PPC 6669 M 12 right 14 right 15 right 14 right N/A PPC 6674 M 17 right 21 right 18 right 21 right 15-17 ringsPPC 3510 H 0 yrs N/A N/A N/A N/A G. elegans J 0 right 0 right 0 right 0 right N/A * M=Male, F=Female, J=Juvenile and H=Hatchling
Humerus Growth Mark Counts and Distance Measurements
In all samples, the scapula and ilium were inconsistent with respect to the number
of growth marks found in the humerus and femur. The shapes and function of these
bones lead to highly variable remodeling and resorption (Gary Matson pers. comm).
Long bones, such as the humerus and femur, with their more cylindrical shafts tend to
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33
have slower and steadier rates of remodeling and resorption (Klinger and Musik 1992).
Therefore, I recommend using either the humerus or femur elements while studying
skeletochronology in tortoises. I chose the humerus because of the relative abundance
(availability) of bones in both modern and fossil specimens.
The next step in the process is to account for resorption of growth marks within
each bone. Tables 4-2 and 4-3 list the specimens, and display visible growth mark
counts, distances of each mark as specified by the equation, and the number of resorbed
rings calculated per the two different methods. It should be noted that all growth mark
counts are + 1 growth line. This range is to account for the partial year in which the
animal died (G. Erickson pers. comm).
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Table 4-2. Gopherus polyphemus age estimates based on the protocol published by Castanet and Cheylan (1979).
Specimen Radius (mm). Distance of Growth Marks from the Center of the Bone (mm)
Avg Width of Marks 1-3 (mm.)
Resorbed Marks Age (yrs.)
DJE-2002-1 3.875 2.51 2.65 2.74 2.82 2.89 3.03 3.4 3.5 3.56 3.61 3.64 3.66 3.69 3.7 3.73 3.76 3.79 3.82 0.103 18 42
DJE-2002-2 3.16 0.64 0.84 1.28 1.67 1.99 2.39 2.55 2.62 2.79 2.91 0.35 1 11DJE-2002-3A 3.65 1.28 1.8 1.98 2.18 2.25 3.08 3.38 3.5 3.62 0.3 4 13DJE-2002-3B 3.81 1 1.21 1.36 1.68 1.83 2.06 2.86 3.3 3.49 37.4 0.22 4 14
DJE-2002-5 3.65 0.9 1.8 2.4 2.75 3.02 3.44 3.6 0.1 1 8
DJE-2002-6 1.865 1.44 1.58 1.74 N/R N/A 3
DJE-2003-9 1.55 0.89 1 1.29 1.36 1.4 1.42 N/R N/A 6
DJE-2003-10 2.17 1.11 1.32 1.55 1.74 2.1 2.14 N/R N/A 6
DJE-2003-12 3.49 2.1 2.64 2.7 3.06 3.08 3.35 3.43 3.48 0.34 6 14
DJE-2003-14 2.25 1.4 1.73 1.92 2.12 2.18 2.22 22.4 N/R N/A 7
DJE-2003-15 3.47 1.58 1.86 2.15 2.63 2.92 3.12 3.42 0.35 4 11
DJE-2003-16 3.30 1.34 1.48 1.64 2.04 2.32 2.59 2.64 2.75 2.99 3.1 0.23 5 15
PPC-6669 3.16 1.3 1.68 2 2.08 2.41 2.67 2.71 2.82 2.96 2.98 3.1 3.2 0.26 5 17
PPC-6674 3.735 1.35 1.52 1.67 1.82 2.11 2.29 2.85 3.25 3.33 3.45 3.52 3.74 3.78 3.88 4 4.12 4.14 0.136 8 25
34
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Table 4-3. Gopherus polyphemus growth estimates using the resorption protocol suggested by Parham and Zug (1997).
Distance of Growth Marks from Center of Resorption Core (mm.) Slope Absorbed
rings Visible
Growth Marks Total (yrs.)
Specimen 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
DJE-2002-1 3.160 4.110 4.530 4.630 4.780 4.860 4.910 4.940 4.980 5.030 5.050 5.060 5.080 5.090 0.434 10.002 14 .0 24 .0
DJE-2002-2 1.280 1.660 2.090 2.350 2.400 2.430 2.460 2.510 2.580 2.660 2.690 0.225 8.607 11 .0 19 .0
DJE-2002-3A 2.850 2.880 3.160 3.200 3.850 4.180 4.240 4.250 4.260 0.504 6.971 9 .0 16 .0
DJE-2002-3B 2.390 2.640 2.900 3.080 3.130 3.340 3.480 3.600 3.690 0.411 7.162 9 .0 16 .0
DJE-2002-5 4.140 4.200 4.660 4.840 5.240 5.280 0.967 4.684 6 .0 10 .0
DJE-2002-6 0.000 0.000 0 .0 0 .0
DJE-2002-9 1.310 1.480 1.700 1.890 1.950 1.990 2.010 2.050 0.206 6.302 8 .0 14 .0
DJE-2002-10 1.930 1.980 2.250 2.610 2.910 0.480 4.504 5 .0 9 .0
DJE-2002-12 2.100 2.410 2.450 2.790 2.860 3.330 3.530 3.610 0.423 6.761 8 .0 14 .0
DJE-2002-14 1.360 1.910 2.190 2.500 2.560 2.600 2.640 2.660 0.308 6.193 8 .0 14 .0
DJE-2002-15 2.013 2.213 2.263 2.325 2.538 2.713 2.950 3.175 0.573 3.426 8 .0 14 .0
DJE-2002-16 3.213 3.500 3.588 3.700 3.913 4.200 4.250 0.654 5.275 7 .0 12 .0
PPC-6669 2.240 2.690 3.200 3.490 3.760 3.950 4.050 4.100 4.930 5.130 5.190 5.230 5.280 5.130 0.406 10.788 14 .0 24 .0
PPC-6674 2.440 2.590 2.910 3.010 3.080 3.730 4.190 4.250 4.390 4.510 4.540 4.660 4.913 5.010 5.040 0.380 11.222 15 .0 26 .0
PPC-3510 0.000 0.000 0.000 0 .0 0 .0
35
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36
Scute Annuli and Shell Length Assessment
Table 4-4 shows each G. polyphemus specimen, the number of growth marks
calculated using the Castanet and the Parham methods, and the number of scute annuli
counted from individual scutes. Checking the correspondence (covariance) of the two
resorption methods required determination of R2 values to compare the number of scute
annuli and the number of growth lines per each method (See Figures 4-1 and 4-2). These
values are listed in separate columns after each of the two growth mark estimates. While
scute annuli can be a good age indicator for some specimens, given the one individual
that was too worn to age, I used another method to validate my estimates (Halliday and
Verrell 1988).
Table 4-4. Gopherus polyphemus age estimates based on scute annuli counts and both skeletochronology protocols employed.
Specimen Scute Annuli
Counts Parham Growth
Counts (yrs.) Castanet Growth
Counts (yrs.) DJE-2002-1 worn smooth 24.0 42.0 DJE-2002-2 11.0 19.0 11.0
DJE-2002-3A 12.0 16.0 13.0 DJE-2002-3B 16.0 14.0 DJE-2002-5 9.0 10.0 8.0 DJE-2002-6 5.0 0.0 3.0 DJE-2003-9 7.0 14.0 6.0 DJE-2003-10 10.0 9.0 6.0 DJE-2003-12 8.0 14.0 14.0 DJE-2003-14 10.0 14.0 7.0 DJE-2003-15 13.0 14.0 11.0 DJE-2003-16 12.0 12.0 15.0
PPC-6669 11.0 24.0 17.0 PPC-6674 16.0 26.0 25.0 PPC-3510 0.0 0.0 0.0 G. elegans 5.0 0.0 0.0
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37
Parham v. Annuli
y = 0.422x + 3.9549R2 = 0.6541
0.000
5.00010.000
15.000
20.000
0.000 10.000 20.000 30.000
Parham MethodSc
ute
Ann
uli
Series1Linear (Series1)
Figure 4-1. Parham growth estimations plotted against annuli counts.
Castanet v. Annuli
y = 0.5042x + 4.2641R2 = 0.6875
0.000
5.000
10.000
15.000
20.000
0.000 10.000 20.000 30.000
Castanet Method
Scut
e A
nnul
i
Series1Linear (Series1)
Figure 4-2. Castanet growth estimates plotted against annuli counts.
The determinations of carapace and plastron lengths are other methods that have
been employed to estimate ages in wild caught and captive raised chelonians (Landers et
al. 1982; Mushinsky et. al. 1994). While both measurements can be useful tools, they
also have drawbacks that have been previously discussed. Landers et al. (1982)
published a classic study linking plastron suture lengths to age in G. polyphemus (See
Figure 4-3). Although their tortoise population was from southern Georgia, the climate is
similar enough to north central Florida to allow for comparison with the specimens
studied here. Therefore, for individuals where accurate plastron measurements are
available, Table 4-5 shows the specimens’ plastron lengths along with both the Castanet
and the Parham growth mark counts. Again, to find the best fit, the R2 values for plastron
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38
length vs. growth mark count for both methods have been calculated and are found in
Figures 4-4 and 4-5. As stated above, plastron measurements are not as accurate in
members of the genus Gopherus as other tortoise genera. Sexual dimorphism, in the
form of epiplastral extensions tend to exaggerate plastron lengths in many specimens
(Mushinsky et al. 1994).
Some turtle and tortoise studies rely on carapace measurements as another method
of aging individuals, although these lengths can be misleading (Zug 1991). Length
measurements can vary based on quality of habitat and caution should be used when
comparing disjunct populations (Mushinsky et. al 1994). These measurements, however,
were recorded for most of the specimens used as a gauge in this study. Unfortunately,
many skeletons, when collected, were disarticulated and exact straight-line carapace
lengths therefore are estimates. To estimate carapace lengths, the calculation methods of
Franz and Quitmyer (In press) were implemented. They found that the hyoplastron bone
length along the suture scales allometrically to body size. This allometric relationship
can be described using a straight-line regression that they derived Eq. 4-1: Log y= a +
b(log X).
Where b = the slope of the line
a = the y intercept
x = the independent variable (Hyoplastron length along suture)
y = the dependent variable (estimated body size/ carapace length)
Based on this formula, Franz and Quitmyer they found that a = 1 and a slope of the
line (b) = 0.75 in modern gopher tortoises can be used. Using their equation, I was able
to obtain straight-line carapace estimations for those tortoises whose shells were beyond
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39
repair. Table 4-7 shows the actual and estimated straight-line carapace lengths and the
actual hyoplastron lengths for all of the G. polyphemus specimens in this project.
Based on the actual and estimated straight-line carapace lengths, I was able to
compare age relationships between skeletochronology estimates and shell lengths (Table
4-6). To determine ages based on carapace lengths, I used the size classes published by
Mushinsky et al. (1994) (See Figure 4-6). These classes were based on studies of tortoise
populations in central Florida and are close enough to my populations to be considered
appropriate correlations. Table 4-6 shows the estimated ages of my specimens using the
length-age comparisons of Mushinsky et al. (1994), both the Parham and Castanet growth
mark counts. The R2 values of the Mushinsky carapace lengths vs. age counts for both
methods can be seen in Figures 4-7 and 4-8. All of these other age correlations provide
firm support for the skeletochronology age estimates that have been found in this project.
Figure 4-3. Gopherus polyphemus age estimations based on plastron lengths by Landers et al. (1982; Figure 13 on page 101).
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40
Table 4-5. Gopherus polyphemus age estimates based on Landers et al. (1982) plastron measurements compared with skeletochronology estimates.
Specimen
Ages estimates plastron
measurements (yrs.)Parham Growth Counts
(yrs.) Castanet Growth
Counts (yrs.) DJE-2002-1 15.0 24.0 42.0 DJE-2002-2 9.0 19.0 11.0 DJE-2002-3A 13.0 16.0 13.0 DJE-2002-3B 16.0 14.0 DJE-2002-5 11.0 10.0 8.0 DJE-2002-6 6.0 0.0 3.0 DJE-2003-9 5.0 14.0 6.0 DJE-2003-10 8.0 9.0 6.0 DJE-2003-12 10.0 14.0 14.0 DJE-2003-14 7.5 14.0 7.0 DJE-2003-15 12.0 14.0 11.0 DJE-2003-16 N/A 12.0 15.0 PPC-6669 10.5 24.0 17.0 PPC-6674 10.5 26.0 25.0 PPC-3510 0.0 0.0 0.0
Parham v. Plastron
y = 0.2888x + 4.6914R2 = 0.4137
0.000
5.000
10.000
15.000
0.000 10.000 20.000 30.000
Parham Method
Plas
tron
Series1Linear (Series1)
Figure 4-4. Parham age estimates plotted against plastron lengths.
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41
Castanet v. Plastron
y = 0.3717x + 4.7937R2 = 0.4842
0.000
5.000
10.000
15.000
0.000 10.000 20.000 30.000
Castanet MethodPl
astr
on Series1Linear (Series1)
Figure 4-5. Castanet age estimates plotted against plastron lengths.
Figure 4-6. Gopherus polyphemus age estimates based on carapace lengths (Mushinsky
et al. 1994; Figure 1 on page 122).
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42
Table 4-6. Gopherus polyphemus age estimates based on Mushinsky et al. (1994)
carapace lengths compared with skeletochronology estimates.
Specimen Ages estimates from carapace (yrs.)
Parham Growth Counts (yrs.)
Castanet Growth Counts (yrs.)
DJE-2002-1 16.0 24.0 42.0 DJE-2002-2 9.0 19.0 11.0 DJE-2002-3A 13.0 16.0 13.0 DJE-2002-3B 16.0 14.0 DJE-2002-5 14.0 10.0 8.0 DJE-2002-6 5.0 0.0 3.0 DJE-2003-9 5.0 14.0 6.0 DJE-2003-10 7.0 9.0 6.0 DJE-2003-12 10.0 14.0 14.0 DJE-2003-14 8.0 14.0 7.0 DJE-2003-15 11.0 14.0 11.0 DJE-2003-16 12.0 12.0 15.0 PPC-6669 12.0 24.0 17.0 PPC-6674 11.0 26.0 25.0 PPC-3510 0.0 0.0 0.0
Parham v. Carapace
y = 0.3679x + 4.3494R2 = 0.4736
0.000
5.000
10.000
15.000
20.000
0.000 10.000 20.000 30.000
Parham Method
Car
apac
e
Series1Linear (Series1)
Figure 4-7. Parham age estimates plotted against carapace lengths.
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43
Castanet v. Carapace
y = 0.2943x + 5.7586R2 = 0.539
0.000
5.000
10.000
15.000
20.000
0.000 20.000 40.000 60.000
Castanet Method
Car
apac
e
Series1Linear (Series1)
Figure 4-8. Castanet age estimates plotted against carapace lengths.
Table 4-7. Gopherus polyphemus shell dimensions and the estimates based on the
findings of Franz and Quitmyer (In press).
Specimen Carapace (mm.) Hyoplastron (mm.) Carapace Estimates (mm.) Plastron (mm.) DJE-2002-1 278.00 63.70 225.50 266.00 DJE-2002-2 224.00 60.10 215.85 210.00 DJE-2002-3A 265.00 65.40 229.98 244.00 DJE-2002-3B DJE-2002-5 258.00 64.80 228.39 227.00 DJE-2002-6 150.00 30.80 130.74 128.00 DJE-2003-9 130.00 33.70 139.87 116.00 DJE-2003-10 174.00 42.00 164.98 167.00 DJE-2003-12 218.00 60.10 215.85 199.00 DJE-2003-14 187.00 47.80 181.79 169.00 DJE-2003-15 220.00 49.30 186.05 210.00 DJE-2003-16 242.00 N/A N/A N/A PPC-6669 244.00 65.10 229.18 223.00 PPC-6674 234.00 59.30 213.69 224.00 PPC-3510 45.50 N/A N/A 46.50
Fossil Humerus Growth Line Counts and Distances
The number of visible growth lines and the number of resorbed growth lines in the
bones of S. nebrascensis and G. laticuneus were counted. Unlike the extant species,
which were analyzed by Matson’s Lab, I prepared, counted, and measured all fossil
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44
specimens. A list of all fossil specimens, their localities, and the species identification
can be seen in Table 2-1.
Marks of skeletal growth were more difficult to discern in fossil specimens due to
the effectiveness of staining in fossils and also due to the required increased thickness of
the prepared thin-sections. Mineral replacement has also destroyed some bone
microstructure, which made counts difficult.
Table 4-8. Fossil tortoise age estimates determined using the Castanet resorption model
Specimen Humerus Diameter
(mm.) Radius (mm.)Avg Width of Rings 1-3
(mm.) Resorbed Rings Age (yrs.) DE-2002-1 21.45 10.7 0.46 6 31 DE-2002-2 4.2 2.1 NR 8 DE-2002-3 16.32 8.16 0.296 7 29 DE-2002-4 11.76 5.88 0.28 9 19 DE-2002-7 7.73 3.86 NR 8 DE-2002-8 22.9 11.5 0.328 12 41 DE-2002-10 1.92 0.96 NR 0 DE-2002-11 10.4 5.23 0.32 2 17 DE-2002-12 8.83 4.41 NR 8 DE-2002-13 20.4 10.2 0.224 10 40 DE-2001-16 5.568 2.78 NR 9 DE-2001-17 30.1 15.1 N/A too remodeled UF 191470 3.4 1.7 NR 5 UF 201906 4.84 2.42 NR 8 UF 209750 11.96 5.98 0.188 11 28 RF-NEOREL-12 4.8 2.4 NR 8 RF-NEOREL-37 13.74 6.86 0.21 2 17 RF-NEOREL-39 15.17 7.58 0.41 6 17 RF-NEOREL-42 15.79 7.89 0.216 9 25 RF-NEOREL-66 5.88 2.94 NR 8 RF-NEOREL-74 15.6 7.8 0.53 1 30
Based on the results of the study of G. polyphemus, it was decided that the Castanet
method for accounting for resorption was more accurate than the Parham method.
Therefore, for fossil specimens, resorption was addressed only using the Castanet
method. Table 4-8 shows the specimen number, number of visible growth lines, average
distance of the inner growth lines, number of resorbed growth lines and the total
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45
estimated age for each individual. Again, all age estimates include a range of + 1 year
based on the season of death. Skeletochronology estimates were compared to carapace
and plastron lengths, although there are no published reports of age classes in fossil
chelonians. Scutes are composed of keratin and unfortunately, are not preserved in the
fossil record, precluding their use in comparing annuli counts.
Fossil Tortoise Shell Measurements
Whenever possible, the straight-line carapace and plastron lengths of fossil
specimens were compared to the number of skeletal growth marks. The same drawbacks
that hold true for G. polyphemus also hold true for fossil samples. In most cases, the
carapaces of fossil individuals were completely disarticulated or misshapen due to the
fossilization process. Efforts were made to estimate the straight-line carapace lengths in
most individuals; however, most carapace lengths are estimates. The allometric model
derived by Franz and Quitmyer (In press) was tested as an option however, fossil S.
nebrascensis and G. laticuneus obviously had different growth curves and grew to larger
sizes than modern Gopherus, thus making their growth model impractical. Therefore,
carapace lengths are based on comparisons between articulated shells and portions of
disarticulated shells of my specimens. As this is the first study of fossil tortoise growth,
there were no relevant comparisons to be made. Fossil tortoise specimens and their
estimated carapace lengths are presented in Table 4-9.
I also encountered similar problems using fossil plastra. Many plastra were not
intact due to the fossilization process and disarticulation, so estimations have to be made.
Accurate length measurements for plastra were obtained since they are much flatter than
the carapace. Along with measurements for fossil carapace and plastron lengths, the
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46
estimated age of the individuals has also been included. This information is provided to
gauge the size vs. age of fossil individuals and can be seen in Table 4-9.
Table 4-9. Carapace and plastron lengths of fossil tortoises compared with
skeletochronology age estimates.
Specimen Carapace (mm.) Plastron (mm.) Age Estimates DE-2002-1 ~560 ~480 31 yrs. DE-2002-2 ~95 ~80 8 yrs. DE-2002-3 ~530 ~450 29 yrs. DE-2002-4 ~260 ~240 19 yrs DE-2002-7 ~230 ~210 8 yrs. DE-2002-8 562 481.5 41 yrs. DE-2002-10 ~85 ~90 0 yrs. DE-2002-11 ~307 ~282 17 yrs. DE-2002-12 240 ~210 8 yrs. DE-2002-13 566 500 40 yrs. DE-2001-16 ~165 ~145 9 yrs. DE-2001-17 ~600 ~530 too remodeled UF 191470 97.9 82.0 5 yrs. UF 201906 124 111.5 8 yrs. UF 209750 366 360 28 yrs. RF-NEOREL-12 158 ~142 8 yrs. RF-NEOREL-37 ~350 ~340 17 yrs. RF-NEOREL-39 ~425 ~405 17 yrs. RF-NEOREL-42 ~425 ~405 25 yrs. RF-NEOREL-66 156 132 8 yrs. RF-NEOREL-74 ~430 ~410 30 yrs.
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CHAPTER 5 USE OF DIFFERENT BONES IN SKELETOCHRONOLOGY
A number of different skeletal elements were taken from G. polyphemus specimens
for sectioning. The humerus and femur (from the front and hind limbs respectively),
scapula (from the shoulder girdle), ilium (from the pelvis), and one vertebra from the
thoracic region of each individual were sectioned. The visible counts from those sections
are shown in Table 4-1.
Figure 5-1. Slides depicting ilium (left) and scapula (right) cross-sections. Arrows point
to visible MSG.
While most sampled elements showed similar visible growth mark counts, there
were a number of contributing factors that resulted in using the humerus for this study.
The humerus, femur, and girdles are more often found than other parts of the skeleton.
Long bones, in particular, tend to undergo the slowest and steadiest rate of remodeling
and resorption. Both of these long bones have shafts that are much more cylindrical in
shape than the other skeletal elements tested. The longer cylindrical shafts, and the
47
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48
absence of bone processes for muscle attachment limit the amount of resorption and
remodeling in bone (G. Erickson pers. comm). Also, the humerus and femur have been
most prominently used in skeletochronology studies dealing with reptiles and
amphibians, and therefore, the techniques applied for accounting for resorbed rings apply
to these bones (Klinger and Musik 1992).
It was originally speculated that bones of the pelvic or shoulder girdle might be the
best elements based on availability in both modern and fossil specimens. This is due to
the fact that fused girdles tend to remain trapped inside tortoise shells long after death.
While this is true in most cases, the problems encountered when dealing with resorption
outweigh the positives of a larger specimen count. Sample size was not an issue with
modern G. polyphemus due to the relative abundance of materials. Fossil specimens,
however, were much harder to obtain. As suspected, most individuals retained remains
of the pelvic and shoulder girdles while very few had limb elements preserved.
Nevertheless specimens preserving limb bones were a high priority for field collecting.
Despite being somewhat rare, sufficient individuals were collected that preserved long
bones.
Finally, the decision was narrowed down between the humerus and femur of the
fore and hind limbs. The humerus was chosen based solely on the relative abundance of
elements in the fossil collection. The relative abundance of humeri as opposed to femora
seems to result from the protection offered by the tortoises’ shells. When a tortoise tucks
into its shell, the front limbs can be tucked more completely and tightly into shell. This
protection may allow for preservation of the front limbs while many of the hind limbs
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49
have been left unprotected and are lost. Therefore, the humerus was the best choice for
use in my skeletochronological research.
Comparison between Skeletochronology and Other Techniques for Aging
Skeletochronology has been a widely accepted technique for aging reptiles and
amphibians for over 20 years (Castanet and Cheylan 1979; Zug et al. 1986; Halliday and
Verrell 1988; Castanet and Smirina 1990; Zug 1991; Germano 1992; Erickson and
Tuminova 2000). And while it is a partially destructive method, the results are much
more consistent than other methods discussed in this project. Obviously,
skeletochronology cannot be used in all situations, such as short-term field studies or
studies that involve extremely rare groups (Gibbons 1976). The method still provides an
important opportunity for scientists to learn important demographic information about
tortoise populations. A purpose of skeletochronology is to gain insight into a population
from aging individual specimens.
To account for resorption of MSG, the Parham method and the Castanet methods
were both tested in G. polyphemus. These estimates were then compared with other
methods of aging chelonians in order to determine the accuracy of the two protocols. The
Castanet method is the more common method and has been employed for over 20 years
(Castanet and Cheylan 1979; Castanet and Smirina 1990; Klinger and Musik 1992),
whereas the Parham me