Ecological Vulnerability Modeling - Asia-Pacific Data-Research...

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Ecological Vulnerability Modeling Delineating Areas of Vulnerability to Algal Invasion in Hawaii using a Niche Model Investigators: John J. Kineman (Senior Research Scientist, University of Colorado and NOAA) Rozita Abdul-Williams (Graduate Student, Michigan State University and University of Colorado) Mark Fornwall (Director, NBII Pacific Basin Information Node and USGS) Derek Masaki (Research Scientist, Pacific Basin Information Node and UH) Sponsorship ($50,000): PRIDE (National Climatic Data Center, NOAA)

Transcript of Ecological Vulnerability Modeling - Asia-Pacific Data-Research...

Page 1: Ecological Vulnerability Modeling - Asia-Pacific Data-Research Centerapdrc.soest.hawaii.edu/PRIDE/workshop05/Kineman PRIDE_2005_v5.pdf · Ecological Vulnerability Modeling Delineating

Ecological Vulnerability ModelingDelineating Areas of Vulnerability to Algal Invasion

in Hawaii using a Niche Model

Investigators:

John J. Kineman (Senior Research Scientist, University of Colorado and NOAA)Rozita Abdul-Williams (Graduate Student, Michigan State University and University of

Colorado)

Mark Fornwall (Director, NBII Pacific Basin Information Node and USGS)Derek Masaki (Research Scientist, Pacific Basin Information Node and UH)

Sponsorship ($50,000):

PRIDE (National Climatic Data Center, NOAA)

Page 2: Ecological Vulnerability Modeling - Asia-Pacific Data-Research Centerapdrc.soest.hawaii.edu/PRIDE/workshop05/Kineman PRIDE_2005_v5.pdf · Ecological Vulnerability Modeling Delineating

Purpose of the Project

• Develop and demonstrate a general modeling approach to identifying areas of vulnerability to marine algal invasions (Hawaii pilot).

• Improve collaboration, sharing, and integrated use of physical and biological data to answer spatial ecological questions.

PredictiveMaps

Iteration Revision

EcologicalDistributionModeler

24 April 2002Ecosystem Informatics at NGDC

Define Controlling Variables

Temperature Photosynthetic Radiation

Precipitation Soil Water Holding Capacity

Multi-variateStratification

Selec

tda

ta la

yers

√ temp√ precip√ swhc√ PAR

LUI[N]elevVrelPETLAIPdens

Add data layer / time period

Remove data layer

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Weig

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ctor

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e

10<23300<700==<10====<2050<

Resp

onse

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nctio

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linearlinearlinearlinearlogsqrtlinearsqre(3x-7)1/xlinear

Define ClassesDefine trainingDefine thresholds

√ System defined

User Definition Delineation Method√Cluster analysis

MaximumliklihoodBaysianprobabilitiesgradient analysis

OutputInput

Decadal-Annual-Seasonal--Monthly--Daily-Hourly

Tim

eSc

ale

start timeend timetime step(run avg.)

Spat

ial

Scale

of u

nit

Coarse------

--Fine

Line

frac

tal

dim

ensio

n (FD

)

1.2D---------1.7D

link FD withspatial scale

Preview

Save Model and ExecuteSet preview background image

Previous Next

Reset defaults

FD = 1.3420

Multi-variateStratification

Selec

tda

ta la

yers

√ temp√ precip√ swhc√ PAR

LUI[N]elevVrelPETLAIPdens

Add data layer / time period

Remove data layer

Selec

tda

ta la

yers

√ temp√ precip√ swhc√ PAR

LUI[N]elevVrelPETLAIPdens

Selec

tda

ta la

yers

√ temp√ precip√ swhc√ PAR

LUI[N]elevVrelPETLAIPdens

Add data layer / time period

Remove data layer

100100507550504576864525

Weig

htfa

ctor

100100507550504576864525

Weig

htfa

ctor

Rang

e

10<23300<700==<10====<2050<

Rang

e

10<23300<700==<10====<2050<

Resp

onse

fu

nctio

n

linearlinearlinearlinearlogsqrtlinearsqre(3x-7)1/xlinear

Resp

onse

fu

nctio

n

linearlinearlinearlinearlogsqrtlinearsqre(3x-7)1/xlinear

Define ClassesDefine trainingDefine thresholds

√ System defined

User Definition Delineation Method√Cluster analysis

MaximumliklihoodBaysianprobabilitiesgradient analysis

Define ClassesDefine trainingDefine thresholds

√ System defined

User DefinitionDefine ClassesDefine trainingDefine thresholds

√ System defined

User Definition Delineation Method√Cluster analysis

MaximumliklihoodBaysianprobabilitiesgradient analysis

Delineation Method√Cluster analysis

MaximumliklihoodBaysianprobabilitiesgradient analysis

OutputInput

Decadal-Annual-Seasonal--Monthly--Daily-Hourly

Tim

eSc

ale

start timeend timetime step(run avg.)

Decadal-Annual-Seasonal--Monthly--Daily-Hourly

Tim

eSc

ale

start timeend timetime step(run avg.)

Spat

ial

Scale

of u

nit

Coarse------

--Fine

Spat

ial

Scale

of u

nit

Coarse------

--Fine

Line

frac

tal

dim

ensio

n (FD

)

1.2D---------1.7D

link FD withspatial scale

Line

frac

tal

dim

ensio

n (FD

)

1.2D---------1.7D

link FD withspatial scale

Preview

Save Model and ExecuteSet preview background image

Previous Next

Reset defaults

FD = 1.3420Preview

Save Model and ExecuteSet preview background image

Previous Next

Reset defaults

FD = 1.3420

test data

�improved data,time series

�new measures�higher resolution�error correction

�validation

�Species Analyst�Biomapper�HSM methods�SWARM

FunctionalFunctionalDefinitionsDefinitions

PhysicalPhysicalPatternsPatterns

• Improve current methods and general informatics for ecosystem management, including monitoring, assessment, and mitigation.

Page 3: Ecological Vulnerability Modeling - Asia-Pacific Data-Research Centerapdrc.soest.hawaii.edu/PRIDE/workshop05/Kineman PRIDE_2005_v5.pdf · Ecological Vulnerability Modeling Delineating

The Problem

• Exotic marine algae are invading island coastal ecosystems, driving out natives and reducing natural ecosystem goods and services.

• Present mitigation plans do not include the ability to estimate potential vulnerability.

• Better predictive capabilities are needed, that are simple and can be added to existing information systems.

Invasive Algae SpeciesHypnea musciformis (L)Acanthophora spicifera (R)

Invasive Algae LocationsIsland of Maui

Page 4: Ecological Vulnerability Modeling - Asia-Pacific Data-Research Centerapdrc.soest.hawaii.edu/PRIDE/workshop05/Kineman PRIDE_2005_v5.pdf · Ecological Vulnerability Modeling Delineating

Relevance to Pacific Island communities, governments, and natural resources

• Impacts of Macroalgae Invasion:– Loss of productivity– Loss of biodiversity– Decrease in the intrinsic value of the reef (aesthetic and tourism impacts)– Changes in community structure of the reef– Erosion of the physical structure of the reef

Healthy Hawaiian Reef Invaded Reef (Cladophora)

Page 5: Ecological Vulnerability Modeling - Asia-Pacific Data-Research Centerapdrc.soest.hawaii.edu/PRIDE/workshop05/Kineman PRIDE_2005_v5.pdf · Ecological Vulnerability Modeling Delineating

Benefits to the Region

• Currently, mechanical removal is the primary method of control

• Response to invasion often comes too late, resulting in severe impact to near shore ecosystems

• Rapid assessment tools would expedite response to potential threats

• Rapid assessment could identify invasive response with respect to changing environmental parameters.

Gracilaria infestation, Waikiki Gracilaria removal, Waikiki

Page 6: Ecological Vulnerability Modeling - Asia-Pacific Data-Research Centerapdrc.soest.hawaii.edu/PRIDE/workshop05/Kineman PRIDE_2005_v5.pdf · Ecological Vulnerability Modeling Delineating

• NOAA and USGS Strategic Plans– “Climate Risk in the Pacific”– Invasive species management, habitat characterization, coastal management, and

ecosystem management (plants and animals)– Biological stewardship, coastal/coastline processes, resource management– Ecology and the environment (ecological processes, biogeography, habitats)– Biological inventories and assessments via the National Biological Information Infrastructure

– Pacific Basin Information Node (PBIN) / Pacific Basin Information Forum (PBIF)– Methods and technology (mathematical modeling, real time monitoring and reporting)– Collaborate with key regional partners (State, Federal and educational organizations)– Disseminate information for decision-making, science, education, public.

• PRIDE Initiative (Report to Congress)– Addresses all three themes (climate and coastal communities, Marine and coastal

ecosystems, and risk management)– Develop critical information resources for the Pacific Region– Coordinate key regional partners in a broad-based multi-disciplinary data enterprise.– Link data resources to address ecosystem management– Develop new tools to assess the ecological consequences of climate variability and change – PRIDE 2004 Call for Proposals

• Pilot projects in data integration across disciplines and institutions• Linking data and models for application to problem-driven science.• “Data Center of the Future” concepts (Ecosystem Informatics)

Relevance to Agency Missions and PRIDE

Page 7: Ecological Vulnerability Modeling - Asia-Pacific Data-Research Centerapdrc.soest.hawaii.edu/PRIDE/workshop05/Kineman PRIDE_2005_v5.pdf · Ecological Vulnerability Modeling Delineating

Benefits to PRIDE

• Standardize modeling of potential ecological distributions.

• Improve collaboration between PRIDE facilities

• Link physical and ecological data and facilities.

• Allow integration with existing PRIDE information systems.

• Provide broad application and flexibility for many kinds of ecological problems.

• Link Pride to other informatic initiatives in the state and the Pacific such as the Pacific Basin Information Node

Page 8: Ecological Vulnerability Modeling - Asia-Pacific Data-Research Centerapdrc.soest.hawaii.edu/PRIDE/workshop05/Kineman PRIDE_2005_v5.pdf · Ecological Vulnerability Modeling Delineating

Project Milestones

• Produce and test a general niche model technique. √

• Define future requirements forintegrating the model into PBIN and other PRIDE information systems.

• Apply in Hawaii to map marine algae invasions using available data. (Aug. 11-19 collaboration at PBIN)

Question: Potential distribution of X = {xi} on A={an}

ŅNicheÓ Modelof Xon A

PotentialDistribution

Units (maps) of X

Validation(Test Maps)

NicheVisualization

and InteractiveEditing

Native Distribution of X

Model Criteria (Characters, constraints,

and scale)Environmental

Database

Delta: Accession and Character Data {xi({ai})}Sampling/Assessment Scheme for xi on {a1, a2, ...an}i

StatisticalDistribution Model, _(x)

SpatialData

Processing

[metadata][archive]

[etc.]

Controlling variables

SpatialStratification

Theory

Env. DataSources

Taxonomic ResourceDatabases

Combined probability

M

Combined probability

M

Combined probability

M

data Model result

Page 9: Ecological Vulnerability Modeling - Asia-Pacific Data-Research Centerapdrc.soest.hawaii.edu/PRIDE/workshop05/Kineman PRIDE_2005_v5.pdf · Ecological Vulnerability Modeling Delineating

The Modeling Approach(hypothetical distribution around Maui using relief data and shoreline

locations as the model constraints)

Page 10: Ecological Vulnerability Modeling - Asia-Pacific Data-Research Centerapdrc.soest.hawaii.edu/PRIDE/workshop05/Kineman PRIDE_2005_v5.pdf · Ecological Vulnerability Modeling Delineating

Key Current and Future Partners

University of Colorado Cooperative Institute for Research in theEnvironmental Sciences (CIRES)

John Kineman, Rozita Abdul-Williams

National Biological Information Infrastructure, Pacific Basin Information Node (PBIN)

Mark Fornwall, Derek Masaki

USGS Water Resources Division Gordon Tribble

University of Hawaii, Manoa Botany Dept Isabella Abbott

NOAA National Ocean Service, Pacific Services Center (PSC)

NOAA National Marine Fisheries Service

University of Hawaii, Manoa Botany Dept. Kim Peyton

Future Collaboration Possibilities

NOAA Coastal Services Center

USDA Natural Resources Conservation Service

University of Hawaii, Manoa; and Waikiki Aquarium Cindy Hunter

University of Hawaii Sea Grant Program Megan Toaspern

University of Hawaii (K-12 education) Alyson Napua Barrows

Maui Community College Cathy Davenport

Organization. University of Hawaii, Marine Gap Analysis Program Noelani Puniwai

Hawaii Natural Heritage Program and Center for Conservation Research and Training, University of Hawaii at Manoa

Barbara (Annie) Gibson

Bishop Museum Richard Pyle

Department of Land and Natural Resources, Division of Aquatic Resources

Skippy Hau

Page 11: Ecological Vulnerability Modeling - Asia-Pacific Data-Research Centerapdrc.soest.hawaii.edu/PRIDE/workshop05/Kineman PRIDE_2005_v5.pdf · Ecological Vulnerability Modeling Delineating

Anticipated Products

• Pilot demonstration of the model– Data layers (environmental and biological)– Model criteria– Data transfer– Off-the-shelf software and linkage

• Preliminary map of invasive potential– Validation

• Pilot study of systems integration issues and potential– Collaboration

Page 12: Ecological Vulnerability Modeling - Asia-Pacific Data-Research Centerapdrc.soest.hawaii.edu/PRIDE/workshop05/Kineman PRIDE_2005_v5.pdf · Ecological Vulnerability Modeling Delineating

Project Status

• Project management established. √– Personnel funded at University of

Colorado and University of Hawaii– Equipment and software acquired √

• General model developed (Univ. of Colorado) √– Tested on physical distribution

(delineating deltas) √– Tested on biotic distribution

(phytoplankton) √

• Data requirements and sources – Being identified for Hawaii demonstration

Combined probability

M

Bathymetry

Phytoplankton

Delta delineation test

Niche model

Benthic habitat

Page 13: Ecological Vulnerability Modeling - Asia-Pacific Data-Research Centerapdrc.soest.hawaii.edu/PRIDE/workshop05/Kineman PRIDE_2005_v5.pdf · Ecological Vulnerability Modeling Delineating

Programmatic Challenges and Opportunities

• Problems– Some funding delays for University partners (resolved).– Data acquisition mostly on schedule, some delays, people very busy.– Need to resolve software bugs and linkage between systems.– Need to publish core methods.

• Future opportunities that have emerged:– Many applications in predictive mapping are emerging.– Strong interest within the Coastal Global Terrestrial Observing System (GTOS).

• Opportunities for follow-on work in Year 2 and beyond:– Apply to a broader range of similar problems, testing and refining the model.– Programming of proven components of the model for greater speed and

efficiency.– Incorporate into or with existing GIS capabilities in PRIDE systems.– Improve distributed linkages with other PRIDE systems.– Expand to other Pacific Islands where appropriate (e.g., through the Pacific

Island RISA and/or PBIF).

Page 14: Ecological Vulnerability Modeling - Asia-Pacific Data-Research Centerapdrc.soest.hawaii.edu/PRIDE/workshop05/Kineman PRIDE_2005_v5.pdf · Ecological Vulnerability Modeling Delineating

Combined probability

M

0 10 20 30 40 500

0.2

0.41.0

• The model runs in off-the-shelf software: Interoperability and speed can be improved by programming it separately, as components are finalized.

• Integration with GIS and other systems can be difficult: The model can be standardized and implemented in or with a GIS environment by creating a model-attribute architecture.

• Method relies on functional response to limiting variables for defining the niche.: This may require new data observations, priorities, and development, including lab studies.

• The model is fundamentally static, representing a theoretical way to build up to complex and/or dynamic behavior: It is thus extensible to dynamic simulations, complex problems, and use of expert knowledge.

Model-Attribute Table

Technical Challenges & Opportunities