Center for Biological Sequence Analysis Database Searching Using alignment algorithms for finding similar sequences.
Alignment methods June 26, 2007 Learning objectives- Understand how Global alignment program works. Understand how Local alignment program works.
Protein function and classification Hsin-Yu Chang .
New techniques that “boost” methods for large-scale multiple sequence alignment and phylogenetic estimation Tandy Warnow Department of Computer Science.
SEPP and TIPP for metagenomic analysis
Application of Hidden Markov Model for Sequence Analysis and Use for Predicting Protein Localization By: Manchikalapati Myerow Shivananda Monday, April.
A Hierarchical Method for Aligning Warped Meshes Leslie Ikemoto 1, Natasha Gelfand 2, Marc Levoy 2 1 UC Berkeley, formerly Stanford 2 Stanford University.
Multiple sequence alignment. Why we do multiple alignments? Multiple nucleotide or amino sequence alignment techniques are usually performed to fit one.
MSA- multiple sequence alignment Aligning many sequences is often preferable to pairwise comparisons. Problem- Computational complexity of multiple alignments.
Alignment methods II April 24, 2007 Learning objectives- 1) Understand how Global alignment program works using the longest common subsequence method.
