CpG island
Transition probabilities inside/outside a CpG island
An HMM for detecting CpG islands
The model contains: 1)Eight states: Q={A+,C+,G+,T+,A-,C-,G-,T-}2)Four symbols of the alphabet: ={A,C,G,T}
Transition probabilities of an HMM for CpG island detection
p: the probability of staying in a CpG islandq: the probability of staying outside a CpG island
HMM in GenScan for gene discovery
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