CpG island
6
-
Upload
chava-carson -
Category
Documents
-
view
20 -
download
0
description
CpG island. Transition probabilities inside/outside a CpG island. An HMM for detecting CpG islands. The model contains: Eight states: Q={A+,C+,G+,T+,A-,C-,G-,T-} Four symbols of the alphabet: S ={A,C,G,T}. Transition probabilities of an HMM for CpG island detection. - PowerPoint PPT Presentation
Transcript of CpG island
CpG island
Transition probabilities inside/outside a CpG island
An HMM for detecting CpG islands
The model contains: 1)Eight states: Q={A+,C+,G+,T+,A-,C-,G-,T-}2)Four symbols of the alphabet: ={A,C,G,T}
Transition probabilities of an HMM for CpG island detection
p: the probability of staying in a CpG islandq: the probability of staying outside a CpG island
HMM in GenScan for gene discovery