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WRLFMD Quarterly Report July-September 2011 Reference Laboratory Contract Report 26/10/2011 WRLFMD
Transcript of WRLFMD Quarterly Report July-September 2011 · 2011-11-03 · WRLFMD Quarterly Report...
WRLFMD Quarterly Report July-September 2011 Reference Laboratory Contract Report 26/10/2011 WRLFMD
WRLFMD Quarterly Report July-September 2011 2011
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WRLFMD Quarterly Report July-September 2011 2011
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OIE/FAO Reference Laboratory Report1,2
July-September 2011
Foot-and-Mouth Disease
1N.B. The content of this report is the property of WRLFMD, IAH-Pirbright. For presentation, publication or
any other public use, please contact Dr. Jef Hammond, IAH-Pirbright, [email protected]. 2 Copies of all the individual reports cited herein can be obtained from Dr. Jef Hammond, IAH-Pirbright,
WRLFMD Quarterly Report July-September 2011 2011
4
Summary
ASIA
Israel
Following 12 outbreaks of FMD type O in the Hazafon/Haifa and Hadarom areas between April and June 2011,
six further outbreaks were reported in the Hazafon area at Shamir, Tsefat (24/06/2011), Shirion Junction, Golan
(30/06/2011), Orcha Junction, Golan (18/07/2011), Devora, Yizreel (10/07/2011), Dalton, Tsefat (10/07/2011)
and Mi'elya, Acco (26/07/2011). All outbreaks involved only cattle. Viruses isolated at the WRLFMD all
belonged to the ME-SA topotype, PanAsia-2ANT-10 lineage (see report below).
Kazakhstan
An outbreak of FMD O occurred in cattle on the 11/08/2011 at Karashilik, Kurchumskiy, East Kazakhstan. A
sample was submitted to the FGI-ARRIAH and the VP1 sequence provided to the WRLFMD. Phylogenetic
analysis showed the sequence to belong to the ME-SA topotype, PanAsia lineage and was closely related to sequences obtained from viruses occurring in Vietnam and P.R. China (Guizhou province) (see report below).
P.R. China
Three further outbreaks of FMD type O have been reported: on 13/07/2011 at Longfeng Village, Pudi, Bijie,
Guizhou in cattle/sheep/goats/pigs; on 31/08/2011 at Liebugou, Lengda Village, Jiacha, Shannan, Tibet in cattle;
and on 30/09/2011 at Duixu Village, Zhongda Town, Lang, Linzhi, Tibet in cattle. No sequence data has been
reported.
Dzauskom region, South Ossetia / Tskhinvali Region Georgia (disputed)
An outbreak of FMD type O occurred in cattle on 05/08/2011. Laboratory diagnosis took place at the FGI-
ARRIAH and the VP1 sequence was provided to the WRLFMD. The virus belonged to the ME-SA topotype,
PanAsia-2ANT-10 lineage (see report below)
Taiwan POC
Two new outbreaks of FMD type O were detected by serology on 11/07/2011 (Yingge District, T'ai-pei) and
26/07/2011 (Shigang District, T'ai-nan); both were in pigs. No viruses were detected.
AFRICA
Botswana
A new outbreak of FMD was reported in cattle at Itoto, Okavango, Ngamiland, Maun (17/09/2011); typing and
genetic analysis by the regional reference laboratory is awaited.
SOUTH AMERICA
Paraguay
FMD type O was found in cattle on 17/09/2011 at Sargento Loma, San Pedro department. FMD previous
occurred in July 2003. No phylogenetic analysis is yet available.
Uncharacterised FMD viruses
A number of other outbreaks have occurred where samples have not been sent to the WRLFMD. It is probable
that the countries involved have performed their own genetic characterisation; however, through the OIE/FAO
laboratory network we would also like to encourage the submission of samples (or complete VP1 sequences) to
the WRLFMD.
An up-to-date list and reports of FMD viruses characterised by sequencing can be found at the following
website: http://www.wrlfmd.org/fmd_genotyping/2011.htm.
WRLFMD Quarterly Report July-September 2011 2011
5
WRLFMD vaccine recommendations have not changed from the previous report (Annex 3).
However, a recently available PanAsia 2 vaccine is being tested in WRLFMD vaccine matching assays
and its ability to match current field strains will be carefully monitored and reported in due course.
A careful watch is being maintained for further outbreaks of Asia 1and any isolates obtained will be
tested for vaccine matching as rapidly as possible including the recent isolates from Turkey.
Results from samples received at WRLFMD (status of samples being tested) are shown in Table 1 and a
complete list of clinical sample diagnostics made by the WRLFMD between July and September 2011 is shown
in Annex 1 Table A. A record of all samples received to IAH-Pirbright (July to September 2011) is shown in
Annex 1 Table B.
Table 1: Status of sequencing of samples received by the WRLFMD from July to September 2011.
Batch Date Recd. Country Serotype No. of sequences Status
WRLFMD/2011/00032 18/07/2011 Kuwait O 2 Completed
WRLFMD/2011/00033 28/07/2011 Thailand O 6 Completed
WRLFMD/2011/00033 28/07/2011 Thailand A 11 Completed
WRLFMD/2011/00034 28/07/2011 Vietnam O 6 Completed
WRLFMD/2011/00034 28/07/2011 Vietnam A 1 Completed
WRLFMD/2011/00035 28/07/2011 Cambodia O 2 Completed
WRLFMD/2011/00036 28/07/2011 Laos O 4 Completed
WRLFMD/2011/00037 28/07/2011 Sri Lanka O 2 Completed
WRLFMD/2011/00038 08/09/2011 Israel O 13 Completed
WRLFMD/2011/00039 15/09/2011 Hong Kong SAR, PRC O 5 Completed
WRLFMD/2011/00041 29/09/2011 Turkey O 3 Sequencing in progress
WRLFMD/2011/00041 29/09/2011 Turkey A+O 1 Sequencing in progress
WRLFMD/2011/00041 29/09/2011 Turkey A 17 Sequencing in progress
WRLFMD/2011/00041 29/09/2011 Turkey Asia 1 3 Sequencing in progress
WRLFMD/2011/00042 29/09/2011 Democratic Republic
of the Congo VI & typing in progress
Total
76
WRLFMD Quarterly Report July-September 2011 2011
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.
Detailed Analysis:
ASIA
Israel
WRLFMD/2011/00038
Date received: 08/09/2011
No. of samples: 17
O: 13
Topotype: ME-SA Lineage: PanAsia-2ANT-10
FMDV-GD: 2
NVD: 2
O/IRN/88/2009
O/IRN/39/2010
O/IRN/38/2010
O/IRN/37/2010
O/IRN/34/2010
O/IRN/33/2010
O/IRN/20/2010
O/IRN/142/2010
O/IRN/101/2010
O/IRN/100/2010
O/IRN/59/2010
O/IRN/65/2010
O/IRN/86/2010
O/IRN/89/2010
O/IRN/90/2010
O/IRN/91/2010
O/AFG/217/2010
O/AFG/219/2010
O/AFG/221/2010
O/IRN/4/2010
O/IRN/30/2010
O/PAK/3/2010
O/PAK/4/2010
O/IRN/2/2010
O/IRN/11/2010
O/PAK/7/2010
O/PAK/14/2010
O/AFG/242/2010
O/PAK/1/2010
O/PAK/2/2010
O/PAK/5/2010
O/PAK/8/2010
O/ISR/1/2011
O/ISR/2/2011
O/ISR/4/2011
O/KUW/1/2011
O/KUW/2/2011
O/ISR/9/2011
O/ISR/22/2011
O/ISR/7/2011
O/ISR/5/2011
O/ISR/6/2011
O/ISR/16/2011
O/ISR/24/2011
O/ISR/11/2011
O/ISR/12/2011
O/ISR/13/2011
O/ISR/17/2011
O/ISR/26/2011
O/ISR/8/2011
O/ISR/21/2011
O/ISR/23/2011
O/ISR/14/2011
O/ISR/15/2011
O/ISR/25/2011
ANT-10
PUN-10 O/PAK/16/2010
FAR-09 O/IRN/31/2009
BAL-09 O/IRN/18/2010
O/IRN/8/2005
TER-08 O/TUR/257/2008* (FMDI)
SAN-09 O/TUR/264/2009* (FMDI)
PanAsia-2
PanAsia
Irn-2001
Ind-2001
Pak-98
O/IND/53/79 (AF292107)
O/IND/R2/75* (AF204276)
O1/Manisa/TUR/69 (AY593823)
ME-SA
SEA
EA-2
EA-3
EA-4
WA
EA-1
CATHAY
ISA-1
ISA-2
EURO-SA
99
99
99
99
99
98
76
80
71
75
95
90
91
78
83
99
82
86
99
99
70
90
99
86
82
74
0.02
Location not found
40 km
20 mi
© Daniel Dalet / d-maps.com
North
South
Center
Tel Aviv
Jerusalem
10
11
12
13
14
1516
1718
1920
21
22
23
24
2526
O
FMDV-GD
NVD
WRLFMD Quarterly Report July-September 2011 2011
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Kazakhstan Date: 11/08/2011
Location: Karashilik, Kurchumskiy, East Kazakhstan
O: 1 (VP1 sequence provided by FGI-ARRIAH)
Topotype: ME-SA
Lineage: PanAsia
O/VIT/7/2011
O/VIT/8/2011
O/CHA/7/2011* (JF837375)
O/VIT/12/2011
O/VIT/9/2011
O/VIT/4/2011
O/VIT/2/2011
O/VIT/21/2011
O/VIT/10/2011
O/VIT/11/2011
O/VIT/22/2011
O/LAO/2/2010
O/VIT/26/2011
O/VIT/34/2011
O/VIT/35/2011
O/Kazakhstan/Aug2011 (ARRIAH)
O/VIT/17/2011
O/VIT/5/2011
O/VIT/6/2011
O/VIT/16/2011
O/VIT/37/2011
O/VIT/14/2011
O/VIT/13/2011
O/VIT/36/2011
O/VIT/15/2011
O/VIT/27/2011
O/VIT/30/2011
O/VIT/16/2010
O/VIT/29/2011
O/VIT/31/2011
O/VIT/25/2011
O/VIT/28/2011
O/VIT/3/2011
O/VIT/32/2011
O/CAM/4/2010
O/VIT/23/2011
O/VIT/4/2010
O/CAM/3/2010
O/CAM/6/2010
O/CAM/1/2010
O/CAM/2/2010
O/VIT/13/2010
O/VIT/15/2010
O/VIT/22/2010
O/VIT/1/2011
O/VIT/11/2010
O/VIT/10/2010
O/VIT/3/2010
O/VIT/9/2010
O/VIT/19/2010
O/VIT/14/2010
O/VIT/6/2010
O/VIT/7/2010
O/VIT/8/2010
O/VIT/12/2010
O/CAM/5/2010
O/CAM/8/2010
O/LAO/1/2011
O/LAO/2/2011
O/VIT/20/2010
O/VIT/21/2010
O/VIT/23/2010
O/TAI/7/2011
O/VIT/17/2005 (HQ116283)
O/CAM/4/2006 (HQ116172)
O/CAM/5/2006 (HQ116173)
O/VIT/14/2002 (DQ165026)
O/VIT/1/2003 (DQ165030)
O/VIT/20/2002 (DQ165029)
O/NEP/4/98 (DQ164935)
O/Tibet/CHA/3/99
O/UKG/35/2001 (AJ539141)
O/TAW/2/99 (AJ294927)
O/TAW/KM/99* (AHRI)
PanAsia
O/IRN/18/2010
O/IRN/31/2009
O/PAK/16/2010
O/South Ossetia/2011 (ARRIAH)
O/IRN/88/2009
O/IRN/8/2005
O/TUR/257/2008* (FMDI)
O/TUR/264/2009* (FMDI)
PanAsia-2
Irn-2001
Ind-2001
Pak-98
O/IND/53/79 (AF292107)
O/IND/R2/75* (AF204276)
O1/Manisa/TUR/69 (AY593823)
ME-SA
SEA
EA-2
EA-3
EA-4
WA
EA-1
CATHAY
ISA-1
ISA-2
EURO-SA
99
99
99
99
99
98
82
75
99
99
88
87
99
93
81
99
77
99
79
97
90
90
87
99
73
O/VIT/7/2011
O/VIT/8/2011
O/CHA/7/2011* (JF837375)
O/VIT/12/2011
O/VIT/9/2011
O/VIT/4/2011
O/VIT/2/2011
O/VIT/21/2011
O/VIT/10/2011
O/VIT/11/2011
O/VIT/22/2011
O/LAO/2/2010
O/VIT/26/2011
O/VIT/34/2011
O/VIT/35/2011
O/Kazakhstan/Aug2011 (ARRIAH)
O/VIT/17/2011
O/VIT/5/2011
O/VIT/6/2011
O/VIT/16/2011
O/VIT/37/2011
O/VIT/14/2011
O/VIT/13/2011
O/VIT/36/2011
97
90
87
300 km
© Daniel Dalet / d-maps.com
200 mi
Akmola
Aktobe
Almaty
Atyrau
East
Kazakhstan
Karagandy
Kostanay
KyzylordaMangystau
North
Kazakhstan
Pavlodar
South
Kazakhstan
West
Kazakhstan
Zhambyl
WRLFMD Quarterly Report July-September 2011 2011
8
O/BUL/19/2011
O/BUL/20/2011
O/BUL/27/2011
O/BUL/26/2011
O/BUL/25/2011
O/BUL/23/2011
O/BUL/15/2011
O/BUL/14/2011
O/BUL/13/2011
O/BUL/11/2011
O/BUL/10/2011
O/ISR/1/2011
O/ISR/2/2011
O/ISR/4/2011
O/BUL/1/2010
O/BUL/3/2011
O/BUL/4/2011
O/BUL/5/2011
O/BUL/6/2011
O/BUL/7/2011
O/TUR/18/2010
O/TUR/840/2010* (FMDI)
O/TUR/868/2010* (FMDI)
O/TUR/883/2010* (FMDI)
O/TUR/926/2010* (FMDI)
O/TUR/1003/2010* (FMDI)
O/TUR/1086/2010* (FMDI)
O/TUR/1094/2010* (FMDI)
O/TUR/1410/2010* (FMDI)
O/IRN/175/2010
O/IRN/204/2010
O/TUR/29/2010
O/IRN/94/2010
O/TUR/12/2010
O/IRN/95/2010
O/TUR/23/2010
O/TUR/153/2010* (FMDI)
O/TUR/154/2010* (FMDI)
O/IRN/114/2010
O/IRN/29/2011
O/IRN/104/2010
O/IRN/184/2010
O/TUR/27/2010
O/TUR/30/2010
O/TUR/36/2010
O/TUR/39/2010
O/IRN/92/2010
O/IRN/180/2010
O/IRN/64/2010
O/AFG/59/2010
O/AFG/61/2010
O/AFG/89/2010
O/PAK/5/2010
O/PAK/8/2010
O/PAK/2/2010
O/PAK/1/2010
O/AFG/242/2010
O/IRN/13/2010
O/IRN/11/2010
O/IRN/12/2010
O/IRN/2/2010
O/IRN/173/2010
O/AFG/119/2010
O/PAK/3/2010
O/IRN/4/2010
O/IRN/14/2010
O/PAK/4/2010
O/IRN/30/2010
O/PAK/7/2010
O/PAK/14/2010
O/IRN/160/2010
O/IRN/90/2010
O/IRN/37/2010
O/AFG/219/2010
O/AFG/221/2010
O/AFG/217/2010
O/IRN/91/2010
O/IRN/38/2010
O/IRN/100/2010
O/IRN/15/2010
O/IRN/39/2010
O/IRN/101/2010
O/IRN/137/2010
O/IRN/59/2010
O/IRN/142/2010
O/IRN/154/2010
O/IRN/155/2010
O/IRN/65/2010
O/IRN/20/2010
O/IRN/88/2009
O/IRN/89/2010
O/IRN/34/2010
O/IRN/33/2010
O/IRN/158/2010
O/IRN/86/2010
O/AFG/104/2010
O/KUW/1/2011
O/KUW/2/2011
O/ISR/5/2011
O/ISR/6/2011
O/ISR/7/2011
O/ISR/8/2011
O/ISR/9/2011
ANT-10
PUN-10 O/PAK/16/2010
O/IRN/8/2005
O/KUW/1/2008
O/KUW/3/2008
FAR-09 O/IRN/31/2009
BAL-09 O/IRN/18/2010
O/ISR/1/2008
O/KUW/9/2008
TER-08 O/TUR/257/2008* (FMDI)
SAN-09 O/TUR/264/2009* (FMDI)
PanAsia-2
PanAsia O/UKG/35/2001 (AJ539141)
Irn-2001 O/IRN/61/2001 (DQ164896)
Ind-2001
Pak-98 O/PAK/16/2003 (DQ165068)
O/IND/53/79 (AF292107)
O/IND/R2/75* (AF204276)
O1/Manisa/TUR/69 (AY593823)
ME-SA
SEA
EA-2
EA-3
EA-4
WA
EA-1
CATHAY
ISA-1
ISA-2
EURO-SA
100
100
100
100
98
100
76
70
94
88
91
76
86
99
99
100
78
83
99
100
86
94
88
95
92
79
100
79
80
88
0.02
O/KUW/1/2011
O/KUW/2/2011
O/ISR/5/2011
O/ISR/6/2011
O/ISR/7/2011
O/ISR/8/2011
O/ISR/9/2011
99
86
0.001
Kuwait
WRLFMD/2011/00032
Date received: 18/07/2011
No. of samples: 2
O: 2
Topotype: ME-SA
Lineage: PanAsia-2ANT-10
30 km
20 mi
© Daniel Dalet / d-maps.com
Al Jahra
Al Ahmadi
Al Asimah
(Al Kuwayt)
Al Farwaniyah
Mubarak
Al-Kabeer
Hawalli
KUW/1/2011
KUW/2/2011
WRLFMD Quarterly Report July-September 2011 2011
9
Hong Kong SAR, P.R. China
WRLFMD/2011/00039
Date received: 15/09/2011
No. of samples: 5
O: 5
Topotype: CATHAY
Lineage: unnamed
(No locations given)
O/HKN/7/2011
O/HKN/5/2011
O/HKN/3/2011
O/HKN/4/2011
O/HKN/6/2011
O/HKN/26/2010
O/HKN/3/2008
O/HKN/4/2008
O/HKN/1/2008
O/HKN/2/2008
O/HKN/2/2009
O/HKN/1/2009
O/HKN/3/2007
O/HKN/4/2007
O/HKN/1/2006
O/HKN/2/2006
O/HKN/4/2006
O/HKN/5/2006
O/HKN/6/2006
O/HKN/24/2005
O/HKN/3/2006
O/HKN/22/2005
O/HKN/23/2005
O/HKN/25/2005
O/HKN/19/2005
O/HKN/20/2005
O/HKN/17/2005
O/HKN/18/2005
O/HKN/14/2005
O/HKN/12/2005
O/HKN/15/2005
O/HKN/9/2004 (DQ164886)
O/HKN/9/2005
O/HKN/10/2005
O/HKN/12/2004 (DQ164889)
O/HKN/3/2004 (DQ164881)
O/HKN/8/2004 (DQ164885)
O/HKN/11/2004 (DQ164888)
O/HKN/6/2004 (DQ164883)
O/HKN/4/2004 (DQ164882)
O/HKN/7/2004 (DQ164884)
O/HKN/10/2004 (DQ164887)
O/HKN/13/2004
O/HKN/2/2003 (DQ164879)
O/HKN/3/2003 (DQ164880)
O/HKN/19/2001 (DQ164876)
O/HKN/3/2002 (DQ164878)
O/HKN/1/2002 (DQ164877)
O/HKN/2002 (AF525458)
O/HKN/4/2001 (DQ164875)
O/HKN/1/99
O/PHI/7/96 (AJ294926)
O/Yunlin/TAW/97 (AF308157)
O/HKN/6/83 (AJ294919)
O/HKN/21/70 (AJ294911)
CATHAY
EURO-SA
ISA-2
ISA-1
EA-3
EA-1
WA
EA-4
EA-2
SEA
ME-SA
100
100
100
100
99
81
83
87
72
100
94
97
100
99
96
83
83
98
95
99
98
100
98
89
96
7099
91
89
98
89
75
88
88
84
89
76
0.02
WRLFMD Quarterly Report July-September 2011 2011
10
Cambodia WRLFMD/2011/00035
Date received: 28/07/2011
No. of samples: 4
O: 2
Topotype: ME-SA
Lineage: PanAsia
FMDV-GD: 2
SEA
Pak-98
O1/Manisa/TUR/69 (AJ251477)
O/IND/53/79 (AF292107)
O/IND/R2/75* (AF204276)
PanAsia-2
Sri Lanka 1997-2010
Irn-2001
Ind-2001
O/CAM/1/2004 (HQ116171)
O/VIT/5/05* (TRRL)
O/VIT/7/2004 (HQ116274)
O/VIT/8/05* (TRRL)
O/VIT/8/2004 (HQ116275)
O/VIT/7/2005 (HQ116280)
O/CAM/1/2008 (HQ116174)
O/LAO/17/2003 (DQ164912)
O/LAO/2/2006 (2003)(EU667451)
O/LAO/19/2003 (DQ164913)
O/LAO/20/2003 (EU667449)
O/LAO/26/2003 (EU667436)
O/VIT/1/2004 (DQ165032)
O/LAO/31/2003 (DQ164918)
O/LAO/3/2006 (2004)(EU667452)
O/LAO/4/2006 (2004)(EU667453)
O/LAO/22/2003 (EU667434)
O/LAO/23/2003 (DQ164915)
O/LAO/28/2003 (DQ164916)
O/LAO/30/2003 (DQ164917)
O/LAO/21/2003 (DQ164914)
O/LAO/5/2006 (2003)(EU667454)
O/LAO/12/2003 (DQ164910)
O/LAO/24/2003 (EU667435)
O/LAO/13/2003 (DQ164911)
O/LAO/11/2003 (DQ164909)
O/LAO/3/2003 (DQ164908)
O/LAO/6/2003 (EU667447)
O/LAO/34/2003
O/VIT/3/2005 (HQ116277)
O/VIT/3/05* (TRRL)
O/CAM/2/2000 (AJ318828)
O/CAM/4/2000 (AJ318829)
O/TAI/9/99 (DQ164978)
O/TAW/2/99 (AJ294927)
O/UKG/35/2001 (AJ539141)
O/LAO/11/99 (EU667443)
O/MAY/2/2000 (AJ318846)
O/TAI/1/2000
O/LAO/1/99 (EU667441)
O/LAO/1/2000 (EU667444)
O/LAO/2/2000 (AJ318844)
O/TAI/2/2003 (DQ164980)
O/CAM/4/2006 (HQ116172)
O/CAM/5/2006 (HQ116173)
O/VIT/17/2005 (HQ116283)
O/TAI/7/2011
O/VIT/21/2010
O/VIT/23/2010
O/VIT/20/2010
O/LAO/1/2011
O/LAO/2/2011
O/VIT/7/2010
O/VIT/8/2010
O/VIT/6/2010
O/VIT/23/2011
O/CAM/4/2010
O/VIT/9/2010
O/VIT/19/2010
O/VIT/14/2010
O/VIT/3/2010
O/VIT/1/2011
O/VIT/10/2010
O/VIT/11/2010
O/VIT/15/2010
O/VIT/22/2010
O/CAM/5/2010
O/CAM/8/2010
O/CAM/2/2010
O/VIT/13/2010
O/CAM/1/2010
O/CAM/3/2010
O/CAM/6/2010
O/VIT/4/2010
O/VIT/12/2010
O/VIT/3/2011
O/VIT/32/2011
O/VIT/30/2011
O/VIT/34/2011
O/VIT/35/2011
O/CHA/7/2011* (JF837375)
O/VIT/12/2011
O/VIT/9/2011
O/VIT/4/2011
O/VIT/26/2011
O/LAO/2/2010
O/VIT/2/2011
O/VIT/21/2011
O/VIT/10/2011
O/VIT/11/2011
O/VIT/22/2011
O/VIT/7/2011
O/VIT/8/2011
O/VIT/15/2011
O/VIT/27/2011
O/VIT/25/2011
O/VIT/31/2011
O/VIT/29/2011
O/VIT/28/2011
O/VIT/16/2010
O/VIT/6/2011
O/VIT/16/2011
O/VIT/5/2011
O/VIT/17/2011
O/VIT/13/2011
O/VIT/14/2011
O/VIT/36/2011
O/VIT/37/2011
PanAsia
ME-SA
EA-3
EA-2
EA-4
WA
EA-1
EURO-SA
ISA-2
ISA-1
CATHAY
100100
99
99
99100
91
78
100
72
100
97
96
100
98
88
97
93
77
90
100
99
95
96
97
72
77
79
81
97
0.02
O/TAI/7/2011
O/VIT/21/2010
O/VIT/23/2010
O/VIT/20/2010
O/LAO/1/2011
O/LAO/2/2011
O/VIT/7/2010
O/VIT/8/2010
O/VIT/6/2010
O/VIT/23/2011
O/CAM/4/2010
O/VIT/9/2010
O/VIT/19/2010
O/VIT/14/2010
O/VIT/3/2010
O/VIT/1/2011
O/VIT/10/2010
O/VIT/11/2010
O/VIT/15/2010
O/VIT/22/2010
O/CAM/5/2010
O/CAM/8/2010
O/CAM/2/2010
O/VIT/13/2010
O/CAM/1/2010
O/CAM/3/2010
O/CAM/6/2010
O/VIT/4/2010
O/VIT/12/2010
O/VIT/3/2011
O/VIT/32/2011
O/VIT/30/2011
O/VIT/34/2011
O/VIT/35/2011
O/CHA/7/2011* (JF837375)
O/VIT/12/2011
O/VIT/9/2011
O/VIT/4/2011
O/VIT/26/2011
O/LAO/2/2010
O/VIT/2/2011
O/VIT/21/2011
O/VIT/10/2011
O/VIT/11/2011
O/VIT/22/2011
O/VIT/7/2011
O/VIT/8/2011
O/VIT/15/2011
O/VIT/27/2011
O/VIT/25/2011
O/VIT/31/2011
O/VIT/29/2011
O/VIT/28/2011
O/VIT/16/2010
O/VIT/6/2011
O/VIT/16/2011
O/VIT/5/2011
O/VIT/17/2011
O/VIT/13/2011
O/VIT/14/2011
O/VIT/36/2011
O/VIT/37/2011
77
90
93
97
0.001
60 km
40 mi
© Daniel Dalet / d-maps.com
ODDAR MEANCHEY
PURSAT
BATTAMBANG
BANTEAY
MEANCHEYSIEM
REAP
KAMPOT
KAMPONG
SPEUKOH
KONG
TAKEO
SIHANOUKVILLE
STUNG
TRENG
KAMPONG
THOM
RATANAKIRI
MONDOLKIRI
PREAH
VIHEAR
KAMPONG
CHAM
KRATIE
KANDAL
KAMPONG
CHHNANG
SVAY
RIENG
PREY
VENG
Phnom Penh
PAILIN
8
67
1
O (2010)
GD (2010)
GD (2011)
WRLFMD Quarterly Report July-September 2011 2011
11
Laos (Lao People's Democratic Republic)
WRLFMD/2011/00036
Date received: 28/07/2011
No. of samples: 4
O: 1
Topotype: SEA
Lineage: Mya-98
O: 3
Topotype: ME-SA
Lineage: PanAsia
40 km
20 mi
© Daniel Dalet / d-maps.com
Attapeu
Bokeo
Bolikhamsai
Champasak
Hua Phan
Khammouane
Luang
Namtha
Luang
PhrabangOudomxay
Phongsali
Sainyabuli
Salavan
Savannakhet
Sekong
Vientiane
Prefecture
Vientiane
Province
Xieng
Khaung1
2 1
20102011
2
O/TAI/23/2009 (HQ116270)
O/VIT/2/2010
O/TAI/19/2009 (HQ116266)
O-GD/MAY/29/2009
O/LAO/1/2010
O-GD/MAY/25/2009
O-GD/MAY/26/2009
O/MAY/20/2009 (HQ116218)
O/MAY/21/2009 (HQ116219)
O-GD/MAY/23/2009
O-GD/MAY/24/2009
O-GD/MAY/27/2009
O-GD/MAY/22/2009
O/TAI/13/2009 (HQ116261)
O/TAI/15/2009 (HQ116262)
O/TAI/16/2009 (HQ116263)
O/TAI/12/2009 (HQ116260)
O/TAI/17/2009 (HQ116264)
O-GD/MAY/7/2010
O/MOG/CO3/2010* (ARRIAH)
O/MOG/6/2010
O/MOG/9/2010
O/MOG/7/2010
O/MOG/5/2010
O/RUS/Aug 2010 (ARRIAH)
O/MOG/1/2010
O/MOG/2/2010
O/MOG/3/2010
O/MOG/4/2010
O/TAI/4/2011
O/TAI/2/2011
O/TAI/5/2011
O/MAY/8/2009 (HQ116216)
O/TAI/18/2009 (HQ116265)
O/LAO/1/2009 (HQ116182)
O/TAI/3/2009 (HQ116258)
O-GD/MAY/10/2010
O-GD/MAY/11/2010
O/MYA/2/2008 (HQ116226)
O/MYA 1/08* (TRRL)
O/TAI 43/08* (TRRL)
O/LAO/2/2008 (HQ116180)
O/LAO/3/2008 (HQ116181)
O/TAI 40/08* (TRRL)
O/TAI 41/08* (TRRL)
O/TAI/5/2008 (HQ116252)
O/TAI 44/08* (TRRL)
O/TAI/7/2008 (HQ116254)
O/TAI 75/08* (TRRL)
O/TAI/3/2008 (HQ116251)
O/TAI/2/2008 (HQ116250)
O/TAI 55/08* (TRRL)
O/TAI/1/2009 (HQ116256)
O/TAI/4/2009 (HQ116259)
O/TAI/6/2008 (HQ116253)
O/TAI/2/2009 (HQ116257)
O/TAI/12/2008 (HQ116255)
O/TAI 60/08* (TRRL)
O/TAI 5/08* (TRRL)
O/TAI 7/08* (TRRL)
O/TAI/14/2007 (HQ116249)
O/TAI/9/2007 (HQ116245)
O/LAO/1/2007 (HQ116175)
O/MAY/7/2007 (HQ116211)
O/MAY/9/2007 (HQ116212)
O/MAY/5/2007 (HQ116209)
O/MYA/3/2008 (HQ116227)
O/MAY/4/2007 (HQ116208)
O/MAY/6/2007 (HQ116210)
O/TAI/7/2007 (HQ116243)
O/TAI/6/2007 (HQ116242)
O/TAI/12/2007 (HQ116247)
O/MAY/5/2009 (HQ116213)
O/MAY/6/2009 (HQ116214)
O/MAY/7/2009 (HQ116215)
O/MYA/1/2009
O/MYA/9/2009 (HQ116230)
O/MYA/12/2009
O-GD/MAY/28/2009
O/TAI/1/2010
O/TAI/20/2009 (HQ116267)
O-GD/MAY/3/2010
O/TAI/25/2009 (HQ116272)
O/TAI/21/2009 (HQ116268)
O-GD/MAY/2/2010
O/TAI/24/2009 (HQ116271)
O/TAI/26/2009
O/TAI/8/2005 (HQ116237)
O/TAI/1/2005 (HQ116234)
O/TAI/21/05* (TRRL)
O/TAI/10/2010
O-GD/MAY/12/2010
O/VIT/5/2010
O/VIT/18/2010
O/TAI/6/2010
O-GD/MAY/8/2010
O/TAI/4/2010
O/TAI/27/2009
O/TAI/2/2010
O/TAI/5/2010
O/TAI/3/2010
O-GD/MAY/13/2010
O/TAI/9/2010
O/MYA/7/2002 (DQ164928)
O/MYA/4/2004
O/MYA/5/04* (TRRL)
O/MYA/2/2006 (HQ116225)
O/MYA/3/2009
O/LAO/2/2001 (EU667445)
O/MAY/5/2001 (DQ164921)
O/MAY/6/2001 (DQ164922)
O/LAO/7/2003 (EU667448)
O/LAO/4/2001 (DQ164907)
O/LAO/1/2003 (EU667446)
O/LAO/35/2003 (EU667450)
O/VIT/6/2005 (HQ116279)
O/MAY/1/2005 (HQ116196)
O/MAY/2/2005 (HQ116197)
O/TAI/10/2007 (HQ116246)
O/TAI/3/2003 (DQ164981)
O/TAI/15/05* (TRRL)
O/TAI/14/05* (TRRL)
O/VIT/7/2006 (HQ116290)
O/VIT/5/2006 (HQ116288)
O/VIT/4/2006 (HQ116287)
O/VIT/6/2006 (HQ116289)
O/LAO/2/2007 (HQ116176)
O/LAO/4/2007 (HQ116178)
O/LAO/3/2007 (HQ116177)
O/LAO/1/2008 (HQ116179)
O/TAI/4/2007 (HQ116240)
O/TAI/5/2007 (HQ116241)
O/TAI/13/2007 (HQ116248)
O/MAY/5/2006 (HQ116207)
O/TAI/9/2005 (HQ116238)
O/TAI/10/2005 (HQ116239)
O/TAI/8/2007 (HQ116244)
O/TAI/8/2004 (HQ116233)
O/MAY/2/2001 (HQ116185)
O/MAY/3/2001 (DQ164920)
O/MYA/5/99 (DQ164926)
O/MYA/2/2000 (DQ164927)
O/MYA/1/98 (AJ303521)
O/MYA/7/98 (DQ164925)
O/MYA/3/04* (TRRL)
O/MYA/4/04* (TRRL)
O/MYA/1/2006
O/VIT/4/2005 (HQ116278)
O/VIT/4/05* (TRRL)
O/VIT/10/05* (TRRL)
O/HLJOC12/03 (China) (DQ119643)
O/MOG/2004 (ARRIAH)
O/VIT/6/05* (TRRL)
O/VIT/9/05* (TRRL)
O/MYA/3/2010
O/MYA/1/04* (TRRL)
O/MYA/2/04* (TRRL)
O/MYA/10/2009 (HQ116231)
O/MYA/11/2009 (HQ116232)
O/MYA/13/2009
O/VIT/NCVD-17/2010 (NVRQS)
O/VIT/NCVD-18/2010 (NVRQS)
O/VIT/NCVD-20/2010 (NVRQS)
O/VIT/NCVD-19/2010 (NVRQS)
O-GD/MAY/30/2009
O/TAI/22/2009 (HQ116269)
O/MYA/5/2009 (HQ116228)
O/MYA/6/2009 (HQ116229)
O/HKN/6/2010
O/HKN/18/2010
O/HKN/4/2010
O/HKN/1/2010
O/HKN/19/2010
O/HKN/20/2010 (HM229661)
O/NC/CHA/2010 (HQ652080)
O/VIT/NCVD-8/2010 (NVRQS)
O/VIT/NCVD-9/2010 (NVRQS)
O/SKR/4/2010
O/KOR/1/2010* (HM143846)
O/MY/CHA/2010 (HQ652079)
O/TZ/CHA/2010 (HQ652081)
O/JPN/2010 (NIAH)
O/CHA/31/2010* (JF792356)
O/RUS/Jul 2010 (ARRIAH)
O/DY/CHA/2010 (HQ652078)
O/HKN/7/2010
O/HKN/8/2010
O/HKN/13/2010
O/HKN/14/2010
O/HKN/15/2010
O/HKN/9/2010
O/HKN/10/2010
O/HKN/11/2010
O/HKN/12/2010
Mya-98
O/TAI/189/87* (TRRL)
O/MYA/1/2010
O/MYA/2/2010
Cam-94
SEA
ME-SA
EA-3
EA-2
EA-4
WA
EA-1
EURO-SA
ISA-2
ISA-1
CATHAY
100100
99
99
100
99
100
100
77
73
82
78
78
100
99
94
99
98
100
81
99
79
80
100
97
72
96
95
99
82
86
76
99
99
100
99
94
97
74
89
97
73
99
87
96
84
87
100
71
98
74
96
100
82
93
98
91
97
70
100
97
78
100
83
99
100
74
78
100
98
100
99
82
75
85
79
97
78
80
97
78
75
82
0.02
O/TAI/23/2009 (HQ116270)
O/VIT/2/2010
O/TAI/19/2009 (HQ116266)
O-GD/MAY/29/2009
O/LAO/1/2010
O-GD/MAY/25/2009
O-GD/MAY/26/2009
O/MAY/20/2009 (HQ116218)
O/MAY/21/2009 (HQ116219)
O-GD/MAY/23/2009
O-GD/MAY/24/2009
O-GD/MAY/27/2009
O-GD/MAY/22/2009
O/TAI/13/2009 (HQ116261)
O/TAI/15/2009 (HQ116262)
O/TAI/16/2009 (HQ116263)
O/TAI/12/2009 (HQ116260)
O/TAI/17/2009 (HQ116264)
O-GD/MAY/7/2010
O/MOG/CO3/2010* (ARRIAH)
O/MOG/6/2010
O/MOG/9/2010
O/MOG/7/2010
O/MOG/5/2010
O/RUS/Aug 2010 (ARRIAH)
O/MOG/1/2010
O/MOG/2/2010
O/MOG/3/2010
O/MOG/4/2010
O/TAI/4/2011
O/TAI/2/2011
O/TAI/5/2011
85
82
79
74
78
75
97
78
100
0.005
SEA
Pak-98
O1/Manisa/TUR/69 (AJ251477)
O/IND/53/79 (AF292107)
O/IND/R2/75* (AF204276)
PanAsia-2
Sri Lanka 1997-2010
Irn-2001
Ind-2001
O/CAM/1/2004 (HQ116171)
O/VIT/5/05* (TRRL)
O/VIT/7/2004 (HQ116274)
O/VIT/8/05* (TRRL)
O/VIT/8/2004 (HQ116275)
O/VIT/7/2005 (HQ116280)
O/CAM/1/2008 (HQ116174)
O/LAO/17/2003 (DQ164912)
O/LAO/2/2006 (2003)(EU667451)
O/LAO/19/2003 (DQ164913)
O/LAO/20/2003 (EU667449)
O/LAO/26/2003 (EU667436)
O/VIT/1/2004 (DQ165032)
O/LAO/31/2003 (DQ164918)
O/LAO/3/2006 (2004)(EU667452)
O/LAO/4/2006 (2004)(EU667453)
O/LAO/22/2003 (EU667434)
O/LAO/23/2003 (DQ164915)
O/LAO/28/2003 (DQ164916)
O/LAO/30/2003 (DQ164917)
O/LAO/21/2003 (DQ164914)
O/LAO/5/2006 (2003)(EU667454)
O/LAO/12/2003 (DQ164910)
O/LAO/24/2003 (EU667435)
O/LAO/13/2003 (DQ164911)
O/LAO/11/2003 (DQ164909)
O/LAO/3/2003 (DQ164908)
O/LAO/6/2003 (EU667447)
O/LAO/34/2003
O/VIT/3/2005 (HQ116277)
O/VIT/3/05* (TRRL)
O/CAM/2/2000 (AJ318828)
O/CAM/4/2000 (AJ318829)
O/TAI/9/99 (DQ164978)
O/TAW/2/99 (AJ294927)
O/UKG/35/2001 (AJ539141)
O/LAO/11/99 (EU667443)
O/MAY/2/2000 (AJ318846)
O/TAI/1/2000
O/LAO/1/99 (EU667441)
O/LAO/1/2000 (EU667444)
O/LAO/2/2000 (AJ318844)
O/TAI/2/2003 (DQ164980)
O/CAM/4/2006 (HQ116172)
O/CAM/5/2006 (HQ116173)
O/VIT/17/2005 (HQ116283)
O/TAI/7/2011
O/VIT/21/2010
O/VIT/23/2010
O/VIT/20/2010
O/LAO/1/2011
O/LAO/2/2011
O/VIT/7/2010
O/VIT/8/2010
O/VIT/6/2010
O/VIT/23/2011
O/CAM/4/2010
O/VIT/9/2010
O/VIT/19/2010
O/VIT/14/2010
O/VIT/3/2010
O/VIT/1/2011
O/VIT/10/2010
O/VIT/11/2010
O/VIT/15/2010
O/VIT/22/2010
O/CAM/5/2010
O/CAM/8/2010
O/CAM/2/2010
O/VIT/13/2010
O/CAM/1/2010
O/CAM/3/2010
O/CAM/6/2010
O/VIT/4/2010
O/VIT/12/2010
O/VIT/3/2011
O/VIT/32/2011
O/VIT/30/2011
O/VIT/34/2011
O/VIT/35/2011
O/CHA/7/2011* (JF837375)
O/VIT/12/2011
O/VIT/9/2011
O/VIT/4/2011
O/VIT/26/2011
O/LAO/2/2010
O/VIT/2/2011
O/VIT/21/2011
O/VIT/10/2011
O/VIT/11/2011
O/VIT/22/2011
O/VIT/7/2011
O/VIT/8/2011
O/VIT/15/2011
O/VIT/27/2011
O/VIT/25/2011
O/VIT/31/2011
O/VIT/29/2011
O/VIT/28/2011
O/VIT/16/2010
O/VIT/6/2011
O/VIT/16/2011
O/VIT/5/2011
O/VIT/17/2011
O/VIT/13/2011
O/VIT/14/2011
O/VIT/36/2011
O/VIT/37/2011
PanAsia
ME-SA
EA-3
EA-2
EA-4
WA
EA-1
EURO-SA
ISA-2
ISA-1
CATHAY
100100
99
99
99100
91
78
100
72
100
97
96
100
98
88
97
93
77
90
100
99
95
96
97
72
77
79
81
97
0.02
O/TAI/7/2011
O/VIT/21/2010
O/VIT/23/2010
O/VIT/20/2010
O/LAO/1/2011
O/LAO/2/2011
O/VIT/7/2010
O/VIT/8/2010
O/VIT/6/2010
O/VIT/23/2011
O/CAM/4/2010
O/VIT/9/2010
O/VIT/19/2010
O/VIT/14/2010
O/VIT/3/2010
O/VIT/1/2011
O/VIT/10/2010
O/VIT/11/2010
O/VIT/15/2010
O/VIT/22/2010
O/CAM/5/2010
O/CAM/8/2010
O/CAM/2/2010
O/VIT/13/2010
O/CAM/1/2010
O/CAM/3/2010
O/CAM/6/2010
O/VIT/4/2010
O/VIT/12/2010
O/VIT/3/2011
O/VIT/32/2011
O/VIT/30/2011
O/VIT/34/2011
O/VIT/35/2011
O/CHA/7/2011* (JF837375)
O/VIT/12/2011
O/VIT/9/2011
O/VIT/4/2011
O/VIT/26/2011
O/LAO/2/2010
O/VIT/2/2011
O/VIT/21/2011
O/VIT/10/2011
O/VIT/11/2011
O/VIT/22/2011
O/VIT/7/2011
O/VIT/8/2011
O/VIT/15/2011
O/VIT/27/2011
O/VIT/25/2011
O/VIT/31/2011
O/VIT/29/2011
O/VIT/28/2011
O/VIT/16/2010
O/VIT/6/2011
O/VIT/16/2011
O/VIT/5/2011
O/VIT/17/2011
O/VIT/13/2011
O/VIT/14/2011
O/VIT/36/2011
O/VIT/37/2011
77
90
93
97
0.001
WRLFMD Quarterly Report July-September 2011 2011
12
South Ossetia / Georgia (disputed) Date: 05/08/2011
Location: Dzauskom region, South Ossetia /
Tskhinvali Region, Georgia
O: 1 (VP1 sequence provided by FGI-ARRIAH)
Topotype: ME-SA
Lineage: PanAsiaANT-10
O/IRN/104/2010
O/IRN/184/2010
O/IRN/114/2010
O/IRN/29/2011
O/TUR/23/2010
O/IRN/115/2010
O/TUR/153/2010* (FMDI)
O/TUR/12/2010
O/IRN/127/2010
O/IRN/94/2010
O/IRN/95/2010
O/TUR/154/2010* (FMDI)
O/IRN/175/2010
O/IRN/204/2010
O/TUR/27/2010
O/TUR/22/2010
O/TUR/29/2010
O/TUR/42/2010
O/TUR/4/2011
O/TUR/1094/2010* (FMDI)
O/TUR/18/2010
O/TUR/840/2010* (FMDI)
O/TUR/868/2010* (FMDI)
O/TUR/883/2010* (FMDI)
O/TUR/926/2010* (FMDI)
O/TUR/1003/2010* (FMDI)
O/TUR/1086/2010* (FMDI)
O/TUR/1410/2010* (FMDI)
O/BUL/1/2010
O/BUL/2/2010
O/BUL/3/2010
O/BUL/2/2010 (RS1)
O/BUL/5/2011
O/BUL/6/2011
O/BUL/7/2011
O/TUR/39/2010
O/TUR/458/2010* (FMDI)
O/IRN/66/2010
O/TUR/32/2010
O/TUR/1/2011
O/IRN/64/2010
O/IRN/92/2010
O/IRN/82/2010
O/IRN/180/2010
O/IRN/136/2010
O/IRN/174/2010
O/IRN/132/2010
O/IRN/147/2010
O/IRN/150/2010
O/IRN/139/2010
O/IRN/35/2010
O/PAK/36/2010
O/AFG/59/2010
O/AFG/61/2010
O/AFG/89/2010
O/IRN/183/2010
O/IRN/96/2010
O/AFG/32/2010
O/AFG/110/2010
O/IRN/62/2010
O/AFG/34/2010
O/IRN/88/2009
O/IRN/97/2010
O/IRN/60/2010
O/South Ossetia/2011 (ARRIAH)
ANT-10
TER-08 O/TUR/257/2008* (FMDI)
SAN-09 O/TUR/264/2009* (FMDI)
O/IRN/8/2005
PUN-10 O/PAK/16/2010
FAR-09 O/IRN/31/2009
BAL-09 O/IRN/18/2010
PanAsia-2
Pak-98 O/PAK/16/2003 (DQ165068)
O/Kazakhstan/Aug2011 (ARRIAH)
O/UKG/35/2001 (AJ539141)PanAsia
Irn-2001
Ind-2001
O/IND/53/79 (AF292107)
O/IND/R2/75* (AF204276)
O1/Manisa/TUR/69 (AY593823)
ME-SA
SEA
EA-2
EA-3
EA-4
WA
EA-1
CATHAY
ISA-1
ISA-2
EURO-SA
100
100
100
100
98
100
76
93
88
89
75
100
94
89
77
70
100
WRLFMD Quarterly Report July-September 2011 2011
13
Sri Lanka
WRLFMD/2011/00037
Date received: 28/07/2011
No. of samples: 2
O: 1 (2010)
Topotype: ME-SA
Lineage: unnamed
O: 1 (2011)
Topotype: ME-SA
Lineage: PanAsia-2
SEA
O/PAK/16/2003 (DQ165068)
O1/Manisa/TUR/69 (AJ251477)
O/IND/53/79 (AF292107)
O/IND/R2/75* (AF204276)
O/NEP/6/2003 (DQ165061)
O-GD/NEP/2/2004
O/IRN/8/2005
O/NEP/2/2003
O/BHU/39/2004 (DQ164870)
O/BHU/40/2004 (DQ165047)
O/AFG/201/2004* (EF457985)
O/BHU/33/2004 (DQ165046)
O/PAK/9/2005
O/PAK/13/2005
O/AFG/120/2004* (EF457984)
O/MAY/6/2003 (DQ165058)
O/MAY/2/2004 (HQ116194)
O/MAY/3/2004 (HQ116195)
O/IND/136/01* (PD-FMD)
O/IND/151/01* (PD-FMD)
O/IND/155/01* (PD-FMD)
MAY/2005-2006
O/IRN/88/2009
O/IRN/31/2009
O/IRN/18/2010
O/TUR/257/2008* (FMDI)
O/TUR/264/2009* (FMDI)
O/PAK/16/2010
O/MAY/11/2009 (HQ116217)
O/SRL/1/2011
PanAsia-2
O/SRL/4/99
O/SRL/6/99
O/SRL/1/99
O/SRL/2/2000
O/SRL/8/99
O/SRL/3/99
O/SRL/9/99
O/SRL/2/97
O/SRL/7/99
O/SRL/1/2000
O/SRL/5/99
O/SRL/1/2009
O/SRL/1/2010
Irn-2001 O/IRN/61/2001 (DQ164896)
O/BHU/3/2009
O/UAE/4/2008
O/KUW/3/97 (DQ164904)
O/OMN/7/2001 (DQ164941)
Ind-2001
O/CAM/1/2004 (HQ116171)
O/VIT/5/05* (TRRL)
O/VIT/7/2004 (HQ116274)
O/VIT/8/05* (TRRL)
O/VIT/8/2004 (HQ116275)
O/VIT/7/2005 (HQ116280)
O/CAM/1/2008 (HQ116174)
O/LAO/17/2003 (DQ164912)
O/LAO/2/2006 (2003)(EU667451)
O/LAO/19/2003 (DQ164913)
O/LAO/20/2003 (EU667449)
LAO/2003-2006; VIT/2004
O/LAO/34/2003
O/VIT/3/2005 (HQ116277)
O/VIT/3/05* (TRRL)
O/CAM/2/2000 (AJ318828)
O/CAM/4/2000 (AJ318829)
O/TAI/9/99 (DQ164978)
O/TAW/2/99 (AJ294927)
O/UKG/35/2001 (AJ539141)
O/LAO/11/99 (EU667443)
O/MAY/2/2000 (AJ318846)
O/TAI/1/2000
O/LAO/1/99 (EU667441)
O/LAO/1/2000 (EU667444)
O/LAO/2/2000 (AJ318844)
O/TAI/2/2003 (DQ164980)
O/CAM/4/2006 (HQ116172)
O/CAM/5/2006 (HQ116173)
O/VIT/17/2005 (HQ116283)
CAM/2010;VIT/2010-11;CHA,TAI,LAO/2011
PanAsia
ME-SA
EA-3
EA-2
EA-4
WA
EA-1
EURO-SA
ISA-2
ISA-1
CATHAY
100100
99
100
99
99100
100
78
99
100
99
93
99
90
97
99
100
100
97
96
100
98
88
97
100
99
79
95
96
97
72
77
79
81
97
0.02
100 km
60 mi
© Daniel Dalet / d-maps.com
Northern
North
Western
North Central
Central
Southern
Eastern
Western Uva
1
2010
2011
1
WRLFMD Quarterly Report July-September 2011 2011
14
Thailand WRLFMD/2011/00033
Date received: 28/07/2011
No. of samples: 17
O: 1
Topotype: ME-SA
Lineage: PanAsia
O: 5
Topotype: SEA
Lineage: Mya-98
A: 11
Topotype: ASIA
Lineage: Sea-97
200 km
© Daniel Dalet / d-maps.com
100 mi
2010
2011
7
1
8
9
10
2
3
4
5
6
7
8
9
10
1112
13
Mya-98
O/TAI/189/87* (TRRL)
O/MYA/1/2010
O/MYA/2/2010
Cam-94
SEA
Pak-98
O1/Manisa/TUR/69 (AJ251477)
O/IND/53/79 (AF292107)
O/IND/R2/75* (AF204276)
PanAsia-2
Sri Lanka 1997-2010
Irn-2001
Ind-2001
O/CAM/1/2004 (HQ116171)
O/VIT/5/05* (TRRL)
O/VIT/7/2004 (HQ116274)
O/VIT/8/05* (TRRL)
O/VIT/8/2004 (HQ116275)
O/VIT/7/2005 (HQ116280)
O/CAM/1/2008 (HQ116174)
O/LAO/17/2003 (DQ164912)
O/LAO/2/2006 (2003)(EU667451)
O/LAO/19/2003 (DQ164913)
O/LAO/20/2003 (EU667449)
O/LAO/26/2003 (EU667436)
O/VIT/1/2004 (DQ165032)
O/LAO/31/2003 (DQ164918)
O/LAO/3/2006 (2004)(EU667452)
O/LAO/4/2006 (2004)(EU667453)
O/LAO/22/2003 (EU667434)
O/LAO/23/2003 (DQ164915)
O/LAO/28/2003 (DQ164916)
O/LAO/30/2003 (DQ164917)
O/LAO/21/2003 (DQ164914)
O/LAO/5/2006 (2003)(EU667454)
O/LAO/12/2003 (DQ164910)
O/LAO/24/2003 (EU667435)
O/LAO/13/2003 (DQ164911)
O/LAO/11/2003 (DQ164909)
O/LAO/3/2003 (DQ164908)
O/LAO/6/2003 (EU667447)
O/LAO/34/2003
O/VIT/3/2005 (HQ116277)
O/VIT/3/05* (TRRL)
O/CAM/2/2000 (AJ318828)
O/CAM/4/2000 (AJ318829)
O/TAI/9/99 (DQ164978)
O/TAW/2/99 (AJ294927)
O/UKG/35/2001 (AJ539141)
O/LAO/11/99 (EU667443)
O/MAY/2/2000 (AJ318846)
O/TAI/1/2000
O/LAO/1/99 (EU667441)
O/LAO/1/2000 (EU667444)
O/LAO/2/2000 (AJ318844)
O/TAI/2/2003 (DQ164980)
O/CAM/4/2006 (HQ116172)
O/CAM/5/2006 (HQ116173)
O/VIT/17/2005 (HQ116283)
O/TAI/7/2011
O/VIT/21/2010
O/VIT/23/2010
O/VIT/20/2010
O/LAO/1/2011
O/LAO/2/2011
O/VIT/7/2010
O/VIT/8/2010
O/VIT/6/2010
O/VIT/23/2011
O/CAM/4/2010
O/VIT/9/2010
O/VIT/19/2010
O/VIT/14/2010
O/VIT/3/2010
O/VIT/1/2011
O/VIT/10/2010
O/VIT/11/2010
O/VIT/15/2010
O/VIT/22/2010
O/CAM/5/2010
O/CAM/8/2010
O/CAM/2/2010
O/VIT/13/2010
O/CAM/1/2010
O/CAM/3/2010
O/CAM/6/2010
O/VIT/4/2010
O/VIT/12/2010
O/VIT/3/2011
O/VIT/32/2011
O/VIT/30/2011
O/VIT/34/2011
O/VIT/35/2011
O/CHA/7/2011* (JF837375)
O/VIT/12/2011
O/VIT/9/2011
O/VIT/4/2011
O/VIT/26/2011
O/LAO/2/2010
O/VIT/2/2011
O/VIT/21/2011
O/VIT/10/2011
O/VIT/11/2011
O/VIT/22/2011
O/VIT/7/2011
O/VIT/8/2011
O/VIT/15/2011
O/VIT/27/2011
O/VIT/25/2011
O/VIT/31/2011
O/VIT/29/2011
O/VIT/28/2011
O/VIT/16/2010
O/VIT/6/2011
O/VIT/16/2011
O/VIT/5/2011
O/VIT/17/2011
O/VIT/13/2011
O/VIT/14/2011
O/VIT/36/2011
O/VIT/37/2011
PanAsia
ME-SA
EA-3
EA-2
EA-4
WA
EA-1
EURO-SA
ISA-2
ISA-1
CATHAY
100100
99
99
99
100
100
91
78
100
72
100
97
96
100
98
88
97
93
77
90
100
99
95
96
97
72
77
79
100
81
94
97
84
98
0.02
O/TAI/7/2011
O/VIT/21/2010
O/VIT/23/2010
O/VIT/20/2010
O/LAO/1/2011
O/LAO/2/2011
O/VIT/7/2010
O/VIT/8/2010
O/VIT/6/2010
O/VIT/23/2011
O/CAM/4/2010
O/VIT/9/2010
O/VIT/19/2010
O/VIT/14/2010
O/VIT/3/2010
O/VIT/1/2011
O/VIT/10/2010
O/VIT/11/2010
O/VIT/15/2010
O/VIT/22/2010
O/CAM/5/2010
O/CAM/8/2010
O/CAM/2/2010
O/VIT/13/2010
O/CAM/1/2010
O/CAM/3/2010
O/CAM/6/2010
O/VIT/4/2010
O/VIT/12/2010
O/VIT/3/2011
O/VIT/32/2011
O/VIT/30/2011
O/VIT/34/2011
O/VIT/35/2011
O/CHA/7/2011* (JF837375)
O/VIT/12/2011
O/VIT/9/2011
O/VIT/4/2011
O/VIT/26/2011
O/LAO/2/2010
O/VIT/2/2011
O/VIT/21/2011
O/VIT/10/2011
O/VIT/11/2011
O/VIT/22/2011
O/VIT/7/2011
O/VIT/8/2011
O/VIT/15/2011
O/VIT/27/2011
O/VIT/25/2011
O/VIT/31/2011
O/VIT/29/2011
O/VIT/28/2011
O/VIT/16/2010
O/VIT/6/2011
O/VIT/16/2011
O/VIT/5/2011
O/VIT/17/2011
O/VIT/13/2011
O/VIT/14/2011
O/VIT/36/2011
O/VIT/37/2011
77
90
93
97
0.001
O/TAI/23/2009 (HQ116270)
O/VIT/2/2010
O/TAI/19/2009 (HQ116266)
O-GD/MAY/29/2009
O/LAO/1/2010
O-GD/MAY/25/2009
O-GD/MAY/26/2009
O/MAY/20/2009 (HQ116218)
O/MAY/21/2009 (HQ116219)
O-GD/MAY/23/2009
O-GD/MAY/24/2009
O-GD/MAY/27/2009
O-GD/MAY/22/2009
O/TAI/13/2009 (HQ116261)
O/TAI/15/2009 (HQ116262)
O/TAI/16/2009 (HQ116263)
O/TAI/12/2009 (HQ116260)
O/TAI/17/2009 (HQ116264)
O-GD/MAY/7/2010
O/MOG/CO3/2010* (ARRIAH)
O/MOG/6/2010
O/MOG/9/2010
O/MOG/7/2010
O/MOG/5/2010
O/RUS/Aug 2010 (ARRIAH)
O/MOG/1/2010
O/MOG/2/2010
O/MOG/3/2010
O/MOG/4/2010
O/TAI/4/2011
O/TAI/2/2011
O/TAI/5/2011
O/MAY/8/2009 (HQ116216)
O/TAI/18/2009 (HQ116265)
O/LAO/1/2009 (HQ116182)
O/TAI/3/2009 (HQ116258)
O-GD/MAY/10/2010
O-GD/MAY/11/2010
O/MYA/2/2008 (HQ116226)
O/MYA 1/08* (TRRL)
O/TAI 43/08* (TRRL)
O/LAO/2/2008 (HQ116180)
O/LAO/3/2008 (HQ116181)
O/TAI 40/08* (TRRL)
O/TAI 41/08* (TRRL)
O/TAI/5/2008 (HQ116252)
O/TAI 44/08* (TRRL)
O/TAI/7/2008 (HQ116254)
O/TAI 75/08* (TRRL)
O/TAI/3/2008 (HQ116251)
O/TAI/2/2008 (HQ116250)
O/TAI 55/08* (TRRL)
O/TAI/1/2009 (HQ116256)
O/TAI/4/2009 (HQ116259)
O/TAI/6/2008 (HQ116253)
O/TAI/2/2009 (HQ116257)
O/TAI/12/2008 (HQ116255)
O/TAI 60/08* (TRRL)
O/TAI 5/08* (TRRL)
O/TAI 7/08* (TRRL)
O/TAI/14/2007 (HQ116249)
O/TAI/9/2007 (HQ116245)
O/LAO/1/2007 (HQ116175)
O/MAY/7/2007 (HQ116211)
O/MAY/9/2007 (HQ116212)
O/MAY/5/2007 (HQ116209)
O/MYA/3/2008 (HQ116227)
O/MAY/4/2007 (HQ116208)
O/MAY/6/2007 (HQ116210)
O/TAI/7/2007 (HQ116243)
O/TAI/6/2007 (HQ116242)
O/TAI/12/2007 (HQ116247)
O/MAY/5/2009 (HQ116213)
O/MAY/6/2009 (HQ116214)
O/MAY/7/2009 (HQ116215)
O/MYA/1/2009
O/MYA/9/2009 (HQ116230)
O/MYA/12/2009
O-GD/MAY/28/2009
O/TAI/1/2010
O/TAI/20/2009 (HQ116267)
O-GD/MAY/3/2010
O/TAI/25/2009 (HQ116272)
O/TAI/21/2009 (HQ116268)
O-GD/MAY/2/2010
O/TAI/24/2009 (HQ116271)
O/TAI/26/2009
O/TAI/8/2005 (HQ116237)
O/TAI/1/2005 (HQ116234)
O/TAI/21/05* (TRRL)
O/TAI/10/2010
O-GD/MAY/12/2010
O/VIT/5/2010
O/VIT/18/2010
O/TAI/6/2010
O-GD/MAY/8/2010
O/TAI/4/2010
O/TAI/27/2009
O/TAI/2/2010
O/TAI/5/2010
O/TAI/3/2010
O-GD/MAY/13/2010
O/TAI/9/2010
O/MYA/7/2002 (DQ164928)
O/MYA/4/2004
O/MYA/5/04* (TRRL)
O/MYA/2/2006 (HQ116225)
O/MYA/3/2009
O/LAO/2/2001 (EU667445)
O/MAY/5/2001 (DQ164921)
O/MAY/6/2001 (DQ164922)
O/LAO/7/2003 (EU667448)
O/LAO/4/2001 (DQ164907)
O/LAO/1/2003 (EU667446)
O/LAO/35/2003 (EU667450)
O/VIT/6/2005 (HQ116279)
O/MAY/1/2005 (HQ116196)
O/MAY/2/2005 (HQ116197)
O/TAI/10/2007 (HQ116246)
O/TAI/3/2003 (DQ164981)
O/TAI/15/05* (TRRL)
O/TAI/14/05* (TRRL)
O/VIT/7/2006 (HQ116290)
O/VIT/5/2006 (HQ116288)
O/VIT/4/2006 (HQ116287)
O/VIT/6/2006 (HQ116289)
O/LAO/2/2007 (HQ116176)
O/LAO/4/2007 (HQ116178)
O/LAO/3/2007 (HQ116177)
O/LAO/1/2008 (HQ116179)
O/TAI/4/2007 (HQ116240)
O/TAI/5/2007 (HQ116241)
O/TAI/13/2007 (HQ116248)
O/MAY/5/2006 (HQ116207)
O/TAI/9/2005 (HQ116238)
O/TAI/10/2005 (HQ116239)
O/TAI/8/2007 (HQ116244)
O/TAI/8/2004 (HQ116233)
O/MAY/2/2001 (HQ116185)
O/MAY/3/2001 (DQ164920)
O/MYA/5/99 (DQ164926)
O/MYA/2/2000 (DQ164927)
O/MYA/1/98 (AJ303521)
O/MYA/7/98 (DQ164925)
O/MYA/3/04* (TRRL)
O/MYA/4/04* (TRRL)
O/MYA/1/2006
O/VIT/4/2005 (HQ116278)
O/VIT/4/05* (TRRL)
O/VIT/10/05* (TRRL)
O/HLJOC12/03 (China) (DQ119643)
O/MOG/2004 (ARRIAH)
O/VIT/6/05* (TRRL)
O/VIT/9/05* (TRRL)
O/MYA/3/2010
O/MYA/1/04* (TRRL)
O/MYA/2/04* (TRRL)
O/MYA/10/2009 (HQ116231)
O/MYA/11/2009 (HQ116232)
O/MYA/13/2009
O/VIT/NCVD-17/2010 (NVRQS)
O/VIT/NCVD-18/2010 (NVRQS)
O/VIT/NCVD-20/2010 (NVRQS)
O/VIT/NCVD-19/2010 (NVRQS)
O-GD/MAY/30/2009
O/TAI/22/2009 (HQ116269)
O/MYA/5/2009 (HQ116228)
O/MYA/6/2009 (HQ116229)
O/HKN/6/2010
O/HKN/18/2010
O/HKN/4/2010
O/HKN/1/2010
O/HKN/19/2010
O/HKN/20/2010 (HM229661)
O/NC/CHA/2010 (HQ652080)
O/VIT/NCVD-8/2010 (NVRQS)
O/VIT/NCVD-9/2010 (NVRQS)
O/SKR/4/2010
O/KOR/1/2010* (HM143846)
O/MY/CHA/2010 (HQ652079)
O/TZ/CHA/2010 (HQ652081)
O/JPN/2010 (NIAH)
O/CHA/31/2010* (JF792356)
O/RUS/Jul 2010 (ARRIAH)
O/DY/CHA/2010 (HQ652078)
O/HKN/7/2010
O/HKN/8/2010
O/HKN/13/2010
O/HKN/14/2010
O/HKN/15/2010
O/HKN/9/2010
O/HKN/10/2010
O/HKN/11/2010
O/HKN/12/2010
Mya-98
O/TAI/189/87* (TRRL)
O/MYA/1/2010
O/MYA/2/2010
Cam-94
SEA
ME-SA
EA-3
EA-2
EA-4
WA
EA-1
EURO-SA
ISA-2
ISA-1
CATHAY
100100
99
99
100
99
100
100
77
73
82
78
78
100
99
94
99
98
100
81
99
79
80
100
97
72
96
95
99
82
86
76
99
99
100
99
94
97
74
89
97
73
99
87
96
84
87
100
71
98
74
96
100
82
93
98
91
97
70
100
97
78
100
83
99
100
74
78
100
98
100
99
82
75
85
79
97
78
80
97
78
75
82
0.02
O/TAI/23/2009 (HQ116270)
O/VIT/2/2010
O/TAI/19/2009 (HQ116266)
O-GD/MAY/29/2009
O/LAO/1/2010
O-GD/MAY/25/2009
O-GD/MAY/26/2009
O/MAY/20/2009 (HQ116218)
O/MAY/21/2009 (HQ116219)
O-GD/MAY/23/2009
O-GD/MAY/24/2009
O-GD/MAY/27/2009
O-GD/MAY/22/2009
O/TAI/13/2009 (HQ116261)
O/TAI/15/2009 (HQ116262)
O/TAI/16/2009 (HQ116263)
O/TAI/12/2009 (HQ116260)
O/TAI/17/2009 (HQ116264)
O-GD/MAY/7/2010
O/MOG/CO3/2010* (ARRIAH)
O/MOG/6/2010
O/MOG/9/2010
O/MOG/7/2010
O/MOG/5/2010
O/RUS/Aug 2010 (ARRIAH)
O/MOG/1/2010
O/MOG/2/2010
O/MOG/3/2010
O/MOG/4/2010
O/TAI/4/2011
O/TAI/2/2011
O/TAI/5/2011
85
82
79
74
78
75
97
78
100
0.005
O/TAI/10/2010
O-GD/MAY/12/2010
O/VIT/5/2010
O/VIT/18/2010
O/TAI/6/2010
O-GD/MAY/8/2010
O/TAI/4/2010
O/TAI/27/2009
O/TAI/2/2010
O/TAI/5/2010
O/TAI/3/2010
O-GD/MAY/13/2010
O/TAI/9/2010
0.001
WRLFMD Quarterly Report July-September 2011 2011
15
A/TAI/15/2008 (HQ116343)
A/TAI/6/2009 (HQ116349)
A/TAI/19/2008 (HQ116347)
A/TAI 73/08* (TRRL)
A/MAY/2/2009 (HQ116305)
A/LAO/4/2008 (HQ116295)
A/TAI/16/2008 (HQ116344)
A/TAI 67/08* (TRRL)
A/HuBWH/CHA/2009 (JF792355)
A/TAI/18/2008 (HQ116346)
A/TAI 70/08* (TRRL)
A/TAI/5/2009 (HQ116348)
A/TAI/17/2008 (HQ116345)
A/TAI 68/08* (TRRL)
A/TAI/10/2009 (HQ116353)
A/VN/02/2009* (GQ406248)
A/VN/03/2009* (GQ406249)
A/VN/16/2009* (GQ406251)
A/MAY/9/2009 (HQ116306)
A/VN/09/2009* (GQ406247)
A/VN/11/2009* (GQ406250)
A/VN/20/2009* (GQ406252)
A/TAI/14/2009 (HQ116354)
A/TAI/13/2008 (HQ116341)
A/TAI 62/08* (TRRL)
A/TAI/9/2008 (HQ116338)
A/TAI/10/2008 (HQ116339)
A/TAI/4/2008 (HQ116336)
A/TAI/8/2009 (HQ116351)
A/TAI/9/2009 (HQ116352)
A/TAI/7/2009 (HQ116350)
A/VIT/1/2010
A/VIT/17/2010
A/TAI 47-1/08* (TRRL)
A/TAI 77/08* (TRRL)
A/TAI/8/2008 (HQ116337)
A/TAI/11/2008 (HQ116340)
A/TAI/14/2008 (HQ116342)
A/TAI 63/08* (TRRL)
A/MAY/3/2007 (HQ116302)
A/TAI/11/2007 (HQ116335)
A/MAY/1/2008 (HQ116303)
A/MAY/3/2008 (HQ116304)
A/TAI 16-1/08* (TRRL)
A/TAI 20/08* (TRRL)
A/TAI/8/2006 (HQ116330)
A/TAI/11/2006 (HQ116333)
A/TAI/2/2006 (HQ116325)
A/TAI/3/2006 (HQ116326)
A/TAI/10/2006 (HQ116332)
A/TAI/4/2006 (HQ116327)
A/TAI/7/2006 (HQ116329)
A/TAI/6/2006 (HQ116328)
A/TAI/9/2006 (HQ116331)
A/CAM/1/2006 (HQ116292)
A/CAM/2/2006 (HQ116293)
A/CAM/2/2008 (HQ116294)
A/CAM 4/08* (TRRL)
A/LAO/6/2006 (EU667457)
A/LAO/7/2006 (EU667458)
A/LAO/8/2006 (EU667459)
A/VIT/14/2005 (HQ116368)
A/VIT/18/2005 (HQ116369)
A/TAI/11/2005 (HQ116323)
A/TAI/1/2006 (HQ116324)
A/MAY/1/2007 (HQ116301)
A/TAI/3/2007 (HQ116334)
A/TAI 54/08* (TRRL)
A/VIT/8/2005 (HQ116365)
A/VIT/10/2005 (HQ116366)
A/VIT/13/2005 (HQ116367)
A/TAI/45/04* (TRRL)
A/TAI/48-2/04R2* (TRRL)
A/TAI/66/04R1* (TRRL)
A/TAI/3-3/05* (TRRL)
A/TAI/1/05R2B2* (TRRL)
A/TAI/4/05R1* (TRRL)
A/TAI/6/05* (TRRL)
A/VIT/6/2004 (HQ116360)
A/VIT/10/2004 (HQ116362)
A/TAI/3/2005 (HQ116320)
A/TAI/9/2004 (HQ116318)
A/VIT/5/2004 (HQ116359)
A/VIT/9/2004 (HQ116361)
A/VIT/11/2004 (HQ116363)
A/TAI/3507/47R2* (TRRL)
A/TAI/4/2003 (HQ116311)
A/TAI/4/04R2* (TRRL)
A/TAI/10/2003 (HQ116314)
A/TAI/7/2003 (HQ116312)
A/TAI/6-3/04* (TRRL)
A/MAY/1/2003 (HQ116296)
A/MAY/3/2003 (HQ116297)
A/TAI/8/2003 (HQ116313)
A/LAO/36/2003 (EU667455)
A/LAO/1/2006 (2003)(EU667456)
A/TAI/8/04R2* (TRRL)
A/MAY/4/2003 (HQ116298)
A/TAI/2/04R2* (TRRL)
A/VIT/4/2004 (HQ116358)
A/VIT/12/2004 (HQ116364)
A/TAI/28-04* (TRRL)
A/TAI/12/2003 (HQ116316)
A/TAI/11/2003 (HQ116315)
A/TAI/6/2004 (HQ116317)
A/TAI/11/04* (TRRL)
A/TAI/1/2011
A/TAI/3/2011
A/THA 69-6/10* (TRRL)
A/TAI/8/2010
A/TAI/7/2010
A/THA 67-3/10* (TRRL)
A/THA 66-1/10* (TRRL)
A/TAI/12/2011
A/TAI/13/2011
A/TAI/10/2011
A/TAI/6/2011
A/TAI/11/2011
A/TAI/8/2011
A/TAI/9/2011
A/MAY/2/2002 (EU414533)
A/TAI/14-1/04* (TRRL)
A/TAI/2/97 (EF208778)
A/TAI/4/2005 (HQ116321)
A/TAI/7/2005 (HQ116322)
A/MAY/5/2005 (HQ116300)
A/TAI/2/2005 (HQ116319)
Sea-97
Thai-87 A/TAI/118/87* (EF208777)
A/IND/7/82 (1980)
A/IND/17/77* (AF204108)
A22/IRQ/24/64 (AJ251474)A22
A/IRN/87
A/SAU/41/91 (FJ755085)Iran-87
Iran-99 A/IRN/22/99 (EF208772)
Iran-96 A/IRN/1/96 (EF208771)
Sau-86 A/SAU/23/86 (EU414536)
A/APR/51/05* (EF120400)
A/APS/50/05/1* (IND)(EU109791)
A/APS/45/05* (IND)(EU109792)
A/APS/58/05* (IND)(EU109790)
A/APS/66/05* (IND)(EU109788)
A/APS/59/05* (IND)(EU109789)
A/APS/44/05* (EF120402)
A/APS/68/05* (EF120403)
A/IND/53/08* (FJ617241)
A/MYA/4/2010
A/IND/152/06* (FJ617247)
A/IND/163/08* (FJ617242)
A/IND/243/04* (FJ617245)
A/IND/360/07* (FJ617243)
A/IND/124/08* (FJ617244)
A/IND/128/08* (FJ617246)
A15 A15/Bangkok/TAI/60 (AY593755)
ASIA
AFRICA
EURO-SA
99
100
100
100
99
100
99
92
94
100
100
100
95
73
100
99
81
94
71
100
100
100
99
74
100
99
85
70
97
81
99
94
71
86
95
77
96
79
96
83
70
80
94
100
86
83
91
95
100
0.02
A/TAI/1/2011
A/TAI/3/2011
A/THA 69-6/10* (TRRL)
A/TAI/8/2010
A/TAI/7/2010
A/THA 67-3/10* (TRRL)
A/THA 66-1/10* (TRRL)
A/TAI/12/2011
A/TAI/13/2011
A/TAI/10/2011
A/TAI/6/2011
A/TAI/11/2011
A/TAI/8/2011
A/TAI/9/2011
71
81
94
0.001
WRLFMD Quarterly Report July-September 2011 2011
16
Turkey
WRLFMD/2011/00041
Date received: 29/09/2011
No. of samples: 38
O: 17
A: 3
A+O: 1
Asia1: 3
FMDV-GD: 14
VP1 sequencing in progress
100 km
© Daniel Dalet / d-maps.com
60 mi
O
AAsia 1FMDV-GD
27
28
29
30
31
32
33
34
35
3637
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55 56
57
58
59
60
61
62
63
64
WRLFMD Quarterly Report July-September 2011 2011
17
Vietnam WRLFMD/2011/00034
Date received: 28/07/2011
No. of samples: 7
O: 1
Topotype: SEA
Lineage: Mya-98
O: 5
Topotype: ME-SA
Lineage: PanAsia
A: 1
Topotype: ASIA
Lineage: Sea-97
150 km
© Daniel Dalet / d-maps.com
100 mi
17
18
19
2021
22
23
O
A
O/TAI/23/2009 (HQ116270)
O/VIT/2/2010
O/TAI/19/2009 (HQ116266)
O-GD/MAY/29/2009
O/LAO/1/2010
O-GD/MAY/25/2009
O-GD/MAY/26/2009
O/MAY/20/2009 (HQ116218)
O/MAY/21/2009 (HQ116219)
O-GD/MAY/23/2009
O-GD/MAY/24/2009
O-GD/MAY/27/2009
O-GD/MAY/22/2009
O/TAI/13/2009 (HQ116261)
O/TAI/15/2009 (HQ116262)
O/TAI/16/2009 (HQ116263)
O/TAI/12/2009 (HQ116260)
O/TAI/17/2009 (HQ116264)
O-GD/MAY/7/2010
O/MOG/CO3/2010* (ARRIAH)
O/MOG/6/2010
O/MOG/9/2010
O/MOG/7/2010
O/MOG/5/2010
O/RUS/Aug 2010 (ARRIAH)
O/MOG/1/2010
O/MOG/2/2010
O/MOG/3/2010
O/MOG/4/2010
O/TAI/4/2011
O/TAI/2/2011
O/TAI/5/2011
O/MAY/8/2009 (HQ116216)
O/TAI/18/2009 (HQ116265)
O/LAO/1/2009 (HQ116182)
O/TAI/3/2009 (HQ116258)
O-GD/MAY/10/2010
O-GD/MAY/11/2010
O/MYA/2/2008 (HQ116226)
O/MYA 1/08* (TRRL)
O/TAI 43/08* (TRRL)
O/LAO/2/2008 (HQ116180)
O/LAO/3/2008 (HQ116181)
O/TAI 40/08* (TRRL)
O/TAI 41/08* (TRRL)
O/TAI/5/2008 (HQ116252)
O/TAI 44/08* (TRRL)
O/TAI/7/2008 (HQ116254)
O/TAI 75/08* (TRRL)
O/TAI/3/2008 (HQ116251)
O/TAI/2/2008 (HQ116250)
O/TAI 55/08* (TRRL)
O/TAI/1/2009 (HQ116256)
O/TAI/4/2009 (HQ116259)
O/TAI/6/2008 (HQ116253)
O/TAI/2/2009 (HQ116257)
O/TAI/12/2008 (HQ116255)
O/TAI 60/08* (TRRL)
O/TAI 5/08* (TRRL)
O/TAI 7/08* (TRRL)
O/TAI/14/2007 (HQ116249)
O/TAI/9/2007 (HQ116245)
O/LAO/1/2007 (HQ116175)
O/MAY/7/2007 (HQ116211)
O/MAY/9/2007 (HQ116212)
O/MAY/5/2007 (HQ116209)
O/MYA/3/2008 (HQ116227)
O/MAY/4/2007 (HQ116208)
O/MAY/6/2007 (HQ116210)
O/TAI/7/2007 (HQ116243)
O/TAI/6/2007 (HQ116242)
O/TAI/12/2007 (HQ116247)
O/MAY/5/2009 (HQ116213)
O/MAY/6/2009 (HQ116214)
O/MAY/7/2009 (HQ116215)
O/MYA/1/2009
O/MYA/9/2009 (HQ116230)
O/MYA/12/2009
O-GD/MAY/28/2009
O/TAI/1/2010
O/TAI/20/2009 (HQ116267)
O-GD/MAY/3/2010
O/TAI/25/2009 (HQ116272)
O/TAI/21/2009 (HQ116268)
O-GD/MAY/2/2010
O/TAI/24/2009 (HQ116271)
O/TAI/26/2009
O/TAI/8/2005 (HQ116237)
O/TAI/1/2005 (HQ116234)
O/TAI/21/05* (TRRL)
O/TAI/10/2010
O-GD/MAY/12/2010
O/VIT/5/2010
O/VIT/18/2010
O/TAI/6/2010
O-GD/MAY/8/2010
O/TAI/4/2010
O/TAI/27/2009
O/TAI/2/2010
O/TAI/5/2010
O/TAI/3/2010
O-GD/MAY/13/2010
O/TAI/9/2010
O/MYA/7/2002 (DQ164928)
O/MYA/4/2004
O/MYA/5/04* (TRRL)
O/MYA/2/2006 (HQ116225)
O/MYA/3/2009
O/LAO/2/2001 (EU667445)
O/MAY/5/2001 (DQ164921)
O/MAY/6/2001 (DQ164922)
O/LAO/7/2003 (EU667448)
O/LAO/4/2001 (DQ164907)
O/LAO/1/2003 (EU667446)
O/LAO/35/2003 (EU667450)
O/VIT/6/2005 (HQ116279)
O/MAY/1/2005 (HQ116196)
O/MAY/2/2005 (HQ116197)
O/TAI/10/2007 (HQ116246)
O/TAI/3/2003 (DQ164981)
O/TAI/15/05* (TRRL)
O/TAI/14/05* (TRRL)
O/VIT/7/2006 (HQ116290)
O/VIT/5/2006 (HQ116288)
O/VIT/4/2006 (HQ116287)
O/VIT/6/2006 (HQ116289)
O/LAO/2/2007 (HQ116176)
O/LAO/4/2007 (HQ116178)
O/LAO/3/2007 (HQ116177)
O/LAO/1/2008 (HQ116179)
O/TAI/4/2007 (HQ116240)
O/TAI/5/2007 (HQ116241)
O/TAI/13/2007 (HQ116248)
O/MAY/5/2006 (HQ116207)
O/TAI/9/2005 (HQ116238)
O/TAI/10/2005 (HQ116239)
O/TAI/8/2007 (HQ116244)
O/TAI/8/2004 (HQ116233)
O/MAY/2/2001 (HQ116185)
O/MAY/3/2001 (DQ164920)
O/MYA/5/99 (DQ164926)
O/MYA/2/2000 (DQ164927)
O/MYA/1/98 (AJ303521)
O/MYA/7/98 (DQ164925)
O/MYA/3/04* (TRRL)
O/MYA/4/04* (TRRL)
O/MYA/1/2006
O/VIT/4/2005 (HQ116278)
O/VIT/4/05* (TRRL)
O/VIT/10/05* (TRRL)
O/HLJOC12/03 (China) (DQ119643)
O/MOG/2004 (ARRIAH)
O/VIT/6/05* (TRRL)
O/VIT/9/05* (TRRL)
O/MYA/3/2010
O/MYA/1/04* (TRRL)
O/MYA/2/04* (TRRL)
O/MYA/10/2009 (HQ116231)
O/MYA/11/2009 (HQ116232)
O/MYA/13/2009
O/VIT/NCVD-17/2010 (NVRQS)
O/VIT/NCVD-18/2010 (NVRQS)
O/VIT/NCVD-20/2010 (NVRQS)
O/VIT/NCVD-19/2010 (NVRQS)
O-GD/MAY/30/2009
O/TAI/22/2009 (HQ116269)
O/MYA/5/2009 (HQ116228)
O/MYA/6/2009 (HQ116229)
O/HKN/6/2010
O/HKN/18/2010
O/HKN/4/2010
O/HKN/1/2010
O/HKN/19/2010
O/HKN/20/2010 (HM229661)
O/NC/CHA/2010 (HQ652080)
O/VIT/NCVD-8/2010 (NVRQS)
O/VIT/NCVD-9/2010 (NVRQS)
O/SKR/4/2010
O/KOR/1/2010* (HM143846)
O/MY/CHA/2010 (HQ652079)
O/TZ/CHA/2010 (HQ652081)
O/JPN/2010 (NIAH)
O/CHA/31/2010* (JF792356)
O/RUS/Jul 2010 (ARRIAH)
O/DY/CHA/2010 (HQ652078)
O/HKN/7/2010
O/HKN/8/2010
O/HKN/13/2010
O/HKN/14/2010
O/HKN/15/2010
O/HKN/9/2010
O/HKN/10/2010
O/HKN/11/2010
O/HKN/12/2010
Mya-98
O/TAI/189/87* (TRRL)
O/MYA/1/2010
O/MYA/2/2010
Cam-94
SEA
ME-SA
EA-3
EA-2
EA-4
WA
EA-1
EURO-SA
ISA-2
ISA-1
CATHAY
100100
99
99
100
99
100
100
77
73
82
78
78
100
99
94
99
98
100
81
99
79
80
100
97
72
96
95
99
82
86
76
99
99
100
99
94
97
74
89
97
73
99
87
96
84
87
100
71
98
74
96
100
82
93
98
91
97
70
100
97
78
100
83
99
100
74
78
100
98
100
99
82
75
85
79
97
78
80
97
78
75
82
0.02
O/TAI/10/2010
O-GD/MAY/12/2010
O/VIT/5/2010
O/VIT/18/2010
O/TAI/6/2010
O-GD/MAY/8/2010
O/TAI/4/2010
O/TAI/27/2009
O/TAI/2/2010
O/TAI/5/2010
O/TAI/3/2010
O-GD/MAY/13/2010
O/TAI/9/2010
0.001
SEA
Pak-98
O1/Manisa/TUR/69 (AJ251477)
O/IND/53/79 (AF292107)
O/IND/R2/75* (AF204276)
PanAsia-2
Sri Lanka 1997-2010
Irn-2001
Ind-2001
O/CAM/1/2004 (HQ116171)
O/VIT/5/05* (TRRL)
O/VIT/7/2004 (HQ116274)
O/VIT/8/05* (TRRL)
O/VIT/8/2004 (HQ116275)
O/VIT/7/2005 (HQ116280)
O/CAM/1/2008 (HQ116174)
O/LAO/17/2003 (DQ164912)
O/LAO/2/2006 (2003)(EU667451)
O/LAO/19/2003 (DQ164913)
O/LAO/20/2003 (EU667449)
O/LAO/26/2003 (EU667436)
O/VIT/1/2004 (DQ165032)
O/LAO/31/2003 (DQ164918)
O/LAO/3/2006 (2004)(EU667452)
O/LAO/4/2006 (2004)(EU667453)
O/LAO/22/2003 (EU667434)
O/LAO/23/2003 (DQ164915)
O/LAO/28/2003 (DQ164916)
O/LAO/30/2003 (DQ164917)
O/LAO/21/2003 (DQ164914)
O/LAO/5/2006 (2003)(EU667454)
O/LAO/12/2003 (DQ164910)
O/LAO/24/2003 (EU667435)
O/LAO/13/2003 (DQ164911)
O/LAO/11/2003 (DQ164909)
O/LAO/3/2003 (DQ164908)
O/LAO/6/2003 (EU667447)
O/LAO/34/2003
O/VIT/3/2005 (HQ116277)
O/VIT/3/05* (TRRL)
O/CAM/2/2000 (AJ318828)
O/CAM/4/2000 (AJ318829)
O/TAI/9/99 (DQ164978)
O/TAW/2/99 (AJ294927)
O/UKG/35/2001 (AJ539141)
O/LAO/11/99 (EU667443)
O/MAY/2/2000 (AJ318846)
O/TAI/1/2000
O/LAO/1/99 (EU667441)
O/LAO/1/2000 (EU667444)
O/LAO/2/2000 (AJ318844)
O/TAI/2/2003 (DQ164980)
O/CAM/4/2006 (HQ116172)
O/CAM/5/2006 (HQ116173)
O/VIT/17/2005 (HQ116283)
O/TAI/7/2011
O/VIT/21/2010
O/VIT/23/2010
O/VIT/20/2010
O/LAO/1/2011
O/LAO/2/2011
O/VIT/7/2010
O/VIT/8/2010
O/VIT/6/2010
O/VIT/23/2011
O/CAM/4/2010
O/VIT/9/2010
O/VIT/19/2010
O/VIT/14/2010
O/VIT/3/2010
O/VIT/1/2011
O/VIT/10/2010
O/VIT/11/2010
O/VIT/15/2010
O/VIT/22/2010
O/CAM/5/2010
O/CAM/8/2010
O/CAM/2/2010
O/VIT/13/2010
O/CAM/1/2010
O/CAM/3/2010
O/CAM/6/2010
O/VIT/4/2010
O/VIT/12/2010
O/VIT/3/2011
O/VIT/32/2011
O/VIT/30/2011
O/VIT/34/2011
O/VIT/35/2011
O/CHA/7/2011* (JF837375)
O/VIT/12/2011
O/VIT/9/2011
O/VIT/4/2011
O/VIT/26/2011
O/LAO/2/2010
O/VIT/2/2011
O/VIT/21/2011
O/VIT/10/2011
O/VIT/11/2011
O/VIT/22/2011
O/VIT/7/2011
O/VIT/8/2011
O/VIT/15/2011
O/VIT/27/2011
O/VIT/25/2011
O/VIT/31/2011
O/VIT/29/2011
O/VIT/28/2011
O/VIT/16/2010
O/VIT/6/2011
O/VIT/16/2011
O/VIT/5/2011
O/VIT/17/2011
O/VIT/13/2011
O/VIT/14/2011
O/VIT/36/2011
O/VIT/37/2011
PanAsia
ME-SA
EA-3
EA-2
EA-4
WA
EA-1
EURO-SA
ISA-2
ISA-1
CATHAY
100100
99
99
99100
91
78
100
72
100
97
96
100
98
88
97
93
77
90
100
99
95
96
97
72
77
79
81
97
0.02
O/TAI/7/2011
O/VIT/21/2010
O/VIT/23/2010
O/VIT/20/2010
O/LAO/1/2011
O/LAO/2/2011
O/VIT/7/2010
O/VIT/8/2010
O/VIT/6/2010
O/VIT/23/2011
O/CAM/4/2010
O/VIT/9/2010
O/VIT/19/2010
O/VIT/14/2010
O/VIT/3/2010
O/VIT/1/2011
O/VIT/10/2010
O/VIT/11/2010
O/VIT/15/2010
O/VIT/22/2010
O/CAM/5/2010
O/CAM/8/2010
O/CAM/2/2010
O/VIT/13/2010
O/CAM/1/2010
O/CAM/3/2010
O/CAM/6/2010
O/VIT/4/2010
O/VIT/12/2010
O/VIT/3/2011
O/VIT/32/2011
O/VIT/30/2011
O/VIT/34/2011
O/VIT/35/2011
O/CHA/7/2011* (JF837375)
O/VIT/12/2011
O/VIT/9/2011
O/VIT/4/2011
O/VIT/26/2011
O/LAO/2/2010
O/VIT/2/2011
O/VIT/21/2011
O/VIT/10/2011
O/VIT/11/2011
O/VIT/22/2011
O/VIT/7/2011
O/VIT/8/2011
O/VIT/15/2011
O/VIT/27/2011
O/VIT/25/2011
O/VIT/31/2011
O/VIT/29/2011
O/VIT/28/2011
O/VIT/16/2010
O/VIT/6/2011
O/VIT/16/2011
O/VIT/5/2011
O/VIT/17/2011
O/VIT/13/2011
O/VIT/14/2011
O/VIT/36/2011
O/VIT/37/2011
77
90
93
97
0.001
WRLFMD Quarterly Report July-September 2011 2011
18
A/TAI/15/2008 (HQ116343)
A/TAI/6/2009 (HQ116349)
A/TAI/19/2008 (HQ116347)
A/TAI 73/08* (TRRL)
A/MAY/2/2009 (HQ116305)
A/LAO/4/2008 (HQ116295)
A/TAI/16/2008 (HQ116344)
A/TAI 67/08* (TRRL)
A/HuBWH/CHA/2009 (JF792355)
A/TAI/18/2008 (HQ116346)
A/TAI 70/08* (TRRL)
A/TAI/5/2009 (HQ116348)
A/TAI/17/2008 (HQ116345)
A/TAI 68/08* (TRRL)
A/TAI/10/2009 (HQ116353)
A/VN/02/2009* (GQ406248)
A/VN/03/2009* (GQ406249)
A/VN/16/2009* (GQ406251)
A/MAY/9/2009 (HQ116306)
A/VN/09/2009* (GQ406247)
A/VN/11/2009* (GQ406250)
A/VN/20/2009* (GQ406252)
A/TAI/14/2009 (HQ116354)
A/TAI/13/2008 (HQ116341)
A/TAI 62/08* (TRRL)
A/TAI/9/2008 (HQ116338)
A/TAI/10/2008 (HQ116339)
A/TAI/4/2008 (HQ116336)
A/TAI/8/2009 (HQ116351)
A/TAI/9/2009 (HQ116352)
A/TAI/7/2009 (HQ116350)
A/VIT/1/2010
A/VIT/17/2010
A/TAI 47-1/08* (TRRL)
A/TAI 77/08* (TRRL)
A/TAI/8/2008 (HQ116337)
A/TAI/11/2008 (HQ116340)
A/TAI/14/2008 (HQ116342)
A/TAI 63/08* (TRRL)
A/MAY/3/2007 (HQ116302)
A/TAI/11/2007 (HQ116335)
A/MAY/1/2008 (HQ116303)
A/MAY/3/2008 (HQ116304)
A/TAI 16-1/08* (TRRL)
A/TAI 20/08* (TRRL)
A/TAI/8/2006 (HQ116330)
A/TAI/11/2006 (HQ116333)
A/TAI/2/2006 (HQ116325)
A/TAI/3/2006 (HQ116326)
A/TAI/10/2006 (HQ116332)
A/TAI/4/2006 (HQ116327)
A/TAI/7/2006 (HQ116329)
A/TAI/6/2006 (HQ116328)
A/TAI/9/2006 (HQ116331)
A/CAM/1/2006 (HQ116292)
A/CAM/2/2006 (HQ116293)
A/CAM/2/2008 (HQ116294)
A/CAM 4/08* (TRRL)
A/LAO/6/2006 (EU667457)
A/LAO/7/2006 (EU667458)
A/LAO/8/2006 (EU667459)
A/VIT/14/2005 (HQ116368)
A/VIT/18/2005 (HQ116369)
A/TAI/11/2005 (HQ116323)
A/TAI/1/2006 (HQ116324)
A/MAY/1/2007 (HQ116301)
A/TAI/3/2007 (HQ116334)
A/TAI 54/08* (TRRL)
A/VIT/8/2005 (HQ116365)
A/VIT/10/2005 (HQ116366)
A/VIT/13/2005 (HQ116367)
A/TAI/45/04* (TRRL)
A/TAI/48-2/04R2* (TRRL)
A/TAI/66/04R1* (TRRL)
A/TAI/3-3/05* (TRRL)
A/TAI/1/05R2B2* (TRRL)
A/TAI/4/05R1* (TRRL)
A/TAI/6/05* (TRRL)
A/VIT/6/2004 (HQ116360)
A/VIT/10/2004 (HQ116362)
A/TAI/3/2005 (HQ116320)
A/TAI/9/2004 (HQ116318)
A/VIT/5/2004 (HQ116359)
A/VIT/9/2004 (HQ116361)
A/VIT/11/2004 (HQ116363)
A/TAI/3507/47R2* (TRRL)
A/TAI/4/2003 (HQ116311)
A/TAI/4/04R2* (TRRL)
A/TAI/10/2003 (HQ116314)
A/TAI/7/2003 (HQ116312)
A/TAI/6-3/04* (TRRL)
A/MAY/1/2003 (HQ116296)
A/MAY/3/2003 (HQ116297)
A/TAI/8/2003 (HQ116313)
A/LAO/36/2003 (EU667455)
A/LAO/1/2006 (2003)(EU667456)
A/TAI/8/04R2* (TRRL)
A/MAY/4/2003 (HQ116298)
A/TAI/2/04R2* (TRRL)
A/VIT/4/2004 (HQ116358)
A/VIT/12/2004 (HQ116364)
A/TAI/28-04* (TRRL)
A/TAI/12/2003 (HQ116316)
A/TAI/11/2003 (HQ116315)
A/TAI/6/2004 (HQ116317)
A/TAI/11/04* (TRRL)
A/TAI/1/2011
A/TAI/3/2011
A/THA 69-6/10* (TRRL)
A/TAI/8/2010
A/TAI/7/2010
A/THA 67-3/10* (TRRL)
A/THA 66-1/10* (TRRL)
A/TAI/12/2011
A/TAI/13/2011
A/TAI/10/2011
A/TAI/6/2011
A/TAI/11/2011
A/TAI/8/2011
A/TAI/9/2011
A/MAY/2/2002 (EU414533)
A/TAI/14-1/04* (TRRL)
A/TAI/2/97 (EF208778)
A/TAI/4/2005 (HQ116321)
A/TAI/7/2005 (HQ116322)
A/MAY/5/2005 (HQ116300)
A/TAI/2/2005 (HQ116319)
Sea-97
Thai-87 A/TAI/118/87* (EF208777)
A/IND/7/82 (1980)
A/IND/17/77* (AF204108)
A22/IRQ/24/64 (AJ251474)A22
A/IRN/87
A/SAU/41/91 (FJ755085)Iran-87
Iran-99 A/IRN/22/99 (EF208772)
Iran-96 A/IRN/1/96 (EF208771)
Sau-86 A/SAU/23/86 (EU414536)
A/APR/51/05* (EF120400)
A/APS/50/05/1* (IND)(EU109791)
A/APS/45/05* (IND)(EU109792)
A/APS/58/05* (IND)(EU109790)
A/APS/66/05* (IND)(EU109788)
A/APS/59/05* (IND)(EU109789)
A/APS/44/05* (EF120402)
A/APS/68/05* (EF120403)
A/IND/53/08* (FJ617241)
A/MYA/4/2010
A/IND/152/06* (FJ617247)
A/IND/163/08* (FJ617242)
A/IND/243/04* (FJ617245)
A/IND/360/07* (FJ617243)
A/IND/124/08* (FJ617244)
A/IND/128/08* (FJ617246)
A15 A15/Bangkok/TAI/60 (AY593755)
ASIA
AFRICA
EURO-SA
99
100
100
100
99
100
99
92
94
100
100
100
95
73
100
99
81
94
71
100
100
100
99
74
100
99
85
70
97
81
99
94
71
86
95
77
96
79
96
83
70
80
94
100
86
83
91
95
100
0.02
A/TAI/15/2008 (HQ116343)
A/TAI/6/2009 (HQ116349)
A/TAI/19/2008 (HQ116347)
A/TAI 73/08* (TRRL)
A/MAY/2/2009 (HQ116305)
A/LAO/4/2008 (HQ116295)
A/TAI/16/2008 (HQ116344)
A/TAI 67/08* (TRRL)
A/HuBWH/CHA/2009 (JF792355)
A/TAI/18/2008 (HQ116346)
A/TAI 70/08* (TRRL)
A/TAI/5/2009 (HQ116348)
A/TAI/17/2008 (HQ116345)
A/TAI 68/08* (TRRL)
A/TAI/10/2009 (HQ116353)
A/VN/02/2009* (GQ406248)
A/VN/03/2009* (GQ406249)
A/VN/16/2009* (GQ406251)
A/MAY/9/2009 (HQ116306)
A/VN/09/2009* (GQ406247)
A/VN/11/2009* (GQ406250)
A/VN/20/2009* (GQ406252)
A/TAI/14/2009 (HQ116354)
A/TAI/13/2008 (HQ116341)
A/TAI 62/08* (TRRL)
A/TAI/9/2008 (HQ116338)
A/TAI/10/2008 (HQ116339)
A/TAI/4/2008 (HQ116336)
A/TAI/8/2009 (HQ116351)
A/TAI/9/2009 (HQ116352)
A/TAI/7/2009 (HQ116350)
A/VIT/1/2010
A/VIT/17/2010
A/TAI 47-1/08* (TRRL)
A/TAI 77/08* (TRRL)
A/TAI/8/2008 (HQ116337)
A/TAI/11/2008 (HQ116340)
A/TAI/14/2008 (HQ116342)
A/TAI 63/08* (TRRL)
97
95
99
91
0.001
WRLFMD Quarterly Report July-September 2011 2011
19
AFRICA
Democratic Republic of the Congo
WRLFMD/2011/00042
Date received: 29/09/2011
No. of samples: 20
Untyped: 20
Vaccine matching
Seventeen FMDV type O isolates (See Table C, Type O for details) from Afghanistan, The Democratic
People’s Republic of Korea (DPRK), Iran, Iraq, Israel, Kuwait, Pakistan, Thailand and Vietnam collected in
2010 and 2011 were analysed antigenically by the two dimensional virus neutralisation test (2dmVNT). All
isolates were antigentically matched with the vaccines O 4625 and O TUR 5/09. Apart from two isolates from
Afghanistan which were not antigenically close to O Manisa, all isolates from Afghanistan, DPRK, Iran, Iraq,
Israel, and Pakistan showed antigenic close to both O Campos and O Manisa. Viruses from Thailand and
Vietnam were antigenically close to O 3039 and O TAW 98 (Table C).
Six FMDV type A viruses (see table C, Type A for details) from Afghanistan, Iran, Iraq and Pakistan collected
in 2011 and 2010 were analysed antigenically by the two dimensional virus neutralisation test (2dmVNT). All
isolates except A AFG 12/2011 showed antigenic match with the A TUR 06 vaccine strain. Viruses from Iraq
150 km
100 mi
© Daniel Dalet / d-maps.com
Bandundu
Bas-Congo
Équateur
Katanga
KinshasaManiema
Nord-Kivu
Orientale
Sud-Kivu
COD/1/2010
COD/2/2010
COD/3/2010
COD/4/2010
COD/5/2010
COD/6/2010
COD/7/2010
COD/1/2011
COD/2/2011
COD/3/2011
COD/4/2011
COD/5/2011
COD/6/2011
COD/7/2011
COD/8/2011
COD/9/2011
COD/10/2011
COD/11/2011
COD/12/2011
COD/13/2011
WRLFMD Quarterly Report July-September 2011 2011
20
and Pakistan were also matched with A IRN 2005 and A22 Iraq. Virus A AFG 12/2011showed no antigenic
matching with all vaccine strains tested (Table C).
Two FMDV type Asia 1 viruses (see table C, Type Asia 1 for details) from Afghanistan showed no antigenic
matching with vaccines Asia 1 IND 8/79 and Asia 1 WBN. However, virus Asia 1 AFG 39/2011was antigenically close to Asia 1 Shamir (Table C).
One FMDV type SAT 1 virus SAT 1 BOT 4/2011 from Botswana showed antigenic match with the vaccine
strain SAT 1 RHO. Three SAT 2 virus from Botswana and Zimbabwe (see table C, Type SAT 1 and SAT 2 for
details) showed no antigenic matching with vaccine SAT 2 Eritrea; but two isolates from Zimbabwe were
antigenically close to the SAT 2 Zim vaccine strain (Table C).
Annex 1.
TABLE A: Clinical sample diagnostics made by the WRL between July-September 2011
Country WRL for FMD Animal
Date of
Collection Results
Sample
Identification
VI/ELISA RT-PCR Final report
BULGARIA BUL 35/2011 Wild boar NK NVD Negative NVD
BUL 36/2011 Wild boar NK NVD Negative NVD
BUL 37/2011 Wild boar NK NVD Negative NVD
BUL 38/2011 Wild boar NK NVD Negative NVD
BUL 39/2011 Deer NK NVD Negative NVD
BUL 40/2011 Deer NK NVD Negative NVD
BUL 41/2011 Deer NK NVD Negative NVD
BUL 42/2011 Deer NK NVD Negative NVD
BUL 43/2011 Deer NK NVD Negative NVD
BUL 44/2011 Deer NK NVD Negative NVD
CAMBODIA CAM 6/2010 Cattle 17.09.10 O Positive O
CAM 7/2010 Cattle 17.09.10 Not tested Positive FMDV GD
CAM 8/2010 Cattle 22.09.10 O Positive O
CAM 1/2011 Cattle 15.03.11 Not tested Positive FMDV GD
DEMONCRATIC COD 1/2010 Cattle 05.10.10 REPUBLIC OF COD 2/2010 Cattle 05.10.10
CONGO COD 3/2010 Cattle 06.10.10
COD 4/2010 Cattle 06.10.10
COD 5/2010 Cattle 06.10.10
COD 6/2010 Cattle 06.10.10
COD 7/2010 Cattle 06.10.10
COD 1/2011 Cattle 01.02.11
COD 2/2011 Cattle 01.02.11
COD 3/2011 Cattle 02.02.11
COD 4/2011 Cattle 02.02.11
COD 5/2011 Cattle 02.02.11
COD 6/2011 Cattle 02.02.11
COD 7/2011 Cattle 02.02.11
COD 8/2011 Cattle 02.02.11
COD 9/2011 Cattle 03.02.11
COD 10/2011 Cattle 03.02.11
COD 11/2011 Cattle 03.02.11
COD 12/2011 Cattle 03.02.11
WRLFMD Quarterly Report July-September 2011 2011
21
COD 13/2011 Cattle 03.02.11
HONG KONG HKN 3/2011 Pig 24.08.11 O Positive O
HKN 4/2011 Pig 24.08.11 O Positive O
HKN 5/2011 Pig 24.08.11 O Positive O
HKN 6/2011 Pig 24.08.11 O Positive O
HKN 7/2011 Pig 24.08.11 O Positive O
ISRAEL ISR 10/2011 Cattle 23.05.11 NVD Negative NVD
ISR 11/2011 Cattle 04.06.11 O Positive O
ISR 12/2011 Cattle 07.06.11 O Positive O
ISR 13/2011 Cattle 17.06.11 O Positive O
ISR 14/2011 Sheep 18.06.11 O Positive O
ISR 15/2011 Sheep 22.06.11 O Positive O
ISR 16/2011 Cattle 22.06.11 O Positive O
ISR 17/2011 Cattle 04.07.11 O Positive O
ISR 18/2011 Cattle 06.07.11 NVD Positive FMDV GD
ISR 19/2011 Cattle 10.07.11 NVD Positive FMDV GD
ISR 20/2011 Cattle 11.07.11 NVD Negative NVD
ISR 21/2011 Cattle 15.07.11 O Positive O
ISR 22/2011 Cattle 15.07.11 O Positive O
ISR 23/2011 Cattle 20.07.11 O Positive O
ISR 24/2011 Cattle 21.07.11 O Positive O
ISR 25/2011 Cattle 31.07.11 O Positive O
ISR 26/2011 Cattle 31.07.11 O Positive O
KUWAIT KUW 1/2011 Cattle NK O Positive O
KUW 2/2011 Cattle NK O Positive O
LAOS LAO 1/2010 Cattle 20.01.10 O Positive O
LAO 2/2010 Cattle 28.12.10 O Positive O
LAO 1/2011 Buffalo 14.01.11 O Positive O
LAO 2/2011 Buffalo 14.01.11 O Positive O
SRI LANKA SRL 1/2010 Cattle 04.08.10 O Positive O
SRL 1/2011 Cattle 07.01.11 O Positive O
THAILAND TAI 7/2010 Cattle 03.12.10 A Positive A
TAI 8/2010 Cattle 15.12.10 A Positive A
TAI 9/2010 Cattle 20.12.10 O Positive O
TAI 10/2010 Cattle 30.12.10 O Positive O
TAI 1/2011 Cattle 04.01.11 A Positive A
TAI 2/2011 Pig 26.01.11 O Positive O
TAI 3/2011 Cattle 28.01.11 A Positive A
TAI 4/2011 Pig 31.01.11 O Positive O
TAI 5/2011 Cattle 10.03.11 O Positive O
TAI 6/2011 Cattle 12.05.11 A Positive A
TAI 7/2011 Cattle 02.06.11 O Positive O
TAI 8/2011 Cattle 02.06.11 A Positive A
TAI 9/2011 Cattle 02.06.11 A Positive A
TAI 10/2011 Cattle 02.06.11 A Positive A
TAI 11/2011 Cattle 06.06.11 A Positive A
TAI 12/2011 Cattle 07.06.11 A Positive A
TAI 13/2011 Cattle 14.06.11 A Positive A
WRLFMD Quarterly Report July-September 2011 2011
22
TURKEY TUR 27/2011 Cattle NK O Positive O
TUR 28/2011 Cattle 31.05.11 O Positive O
TUR 29/2011 Cattle 02.06.11 A Positive A
TUR 30/2011 Cattle 06.06.11 A Positive A
TUR 31/2011 Cattle 06.06.11 NVD Positive FMDV GD
TUR 32/2011 Cattle 07.06.11 NVD Positive FMDV GD
TUR 33/2011 Cattle 15.06.11 O Positive O
TUR 34/2011 Cattle 17.06.11 A Positive A
TUR 35/2011 Cattle 17.06.11 A Positive A
TUR 36/2011 Cattle 22.06.11 A Positive A
TUR 37/2011 Cattle 24.06.11 A Positive A
TUR 38/2011 Cattle 24.06.11 NVD Positive FMDV GD
TUR 39/2011 Cattle 28.06.11 NVD Positive FMDV GD
TUR 40/2011 Cattle 29.06.11 NVD Positive FMDV GD
TUR 41/2011 Cattle 30.06.11 A Positive A
TUR 42/2011 Cattle 06.07.11 A Positive A
TUR 43/2011 Cattle 11.07.11
Positive
TUR 44/2011 Cattle 16.07.11 A Positive A
TUR 45/2011 Cattle 19.07.11
Positive
TUR 46/2011 Cattle 27.07.11 A Positive A
TUR 47/2011 Cattle 01.08.11 A Positive A
TUR 48/2011 Cattle 02.08.11 A Positive A
TUR 49/2011 Cattle 15.08.11 Asia 1 Positive Asia 1
TUR 50/2011 Cattle 15.08.11
TUR 51/2011 Cattle 15.08.11
TUR 52/2011 Cattle 15.08.11
TUR 53/2011 Cattle 18.08.11
TUR 54/2011 Cattle 18.08.11
TUR 55/2011 Cattle 19.08.11
TUR 56/2011 Cattle 19.08.11
TUR 57/2011 Cattle 19.08.11
TUR 58/2011 Cattle 19.08.11
TUR 59/2011 Cattle 23.08.11
TUR 60/2011 Cattle 25.08.11
TUR 61/2011 Cattle 06.09.11
TUR 62/2011 Cattle 07.09.11
TUR 63/2011 Cattle 08.09.11
TUR 64/2011 Cattle 09.09.11
UNITED UKG 1/2011 Pig 08.07.11 NVD Negative NVD
KINGDOM UKG 2/2011 Pig 08.07.11 NVD Negative NVD
UKG 3/2011 Pig 08.07.11 NVD Negative NVD
UKG 4/2011 Pig 08.07.11 NVD Negative NVD
UKG 5/2011 Pig 26.09.11 NVD Negative NVD
VIETNAM VIT 17/2010 Cattle 00.01.10 A Positive A
VIT 18/2010 Pig 11.09.10 O Positive O
VIT 19/2010 Cattle 14.10.10 O Positive O
VIT 20/2010 Buffalo 05.11.10 O Positive O
VIT 21/2010 Pig 12.11.10 O Positive O
VIT 22/2010 Cattle 18.11.10 O Positive O
VIT 23/2010 Pig 22.11.10 O Positive O
TOTAL : 131
WRLFMD Quarterly Report July-September 2011 2011
23
* Institute for Animal Health, Pirbright Laboratory, Woking, Surrey GU24 0NF
FMD(V) foot-and-mouth disease (virus)
GD genome detected
VI/ELISA FMDV serotype identified following virus isolation in cell culture and antigen ELISA
RT-PCR reverse transcription polymerase chain reaction on epithelial suspension for FMD viral genome
NVD no foot-and-mouth disease, swine vesicular disease or vesicular stomatitis virus detected
TABLE B: Summary of samples collected and received to IAH-Pirbright (July-September 2011)
Country No. of Virus isolation in cell culture/ELISA
RT-PCR for FMD (or
SVD)
samples FMD virus serotypes NVD NT
virus (where
appropriate)
O A C
SAT
1
SAT
2
SAT
3
Asia
1 Pos Neg
BULGARIA 10 - - - - - - - 10 - - 10
CAMBODIA 4 2 - - - - - - - 2 4 -
DEMOCRATIC 20 4 7 - - - - - 9 - 19 1
REPUBLIC OF CONGO
HONG KONG 5 5 - - - - - - - - 5 -
ISRAEL 17 13 - - - - - - 4 - 15 2
KUWAIT 2 2 - - - - - - - - 2 -
LAOS 4 4 - - - - - - - - 4 -
SRI LANKA 2 2 - - - - - - - - 2 -
THAILAND 17 6 11 - - - - - - - 17 -
TURKEY** 38 4 18 - - - - 3 14 - 38 -
UNITED
KINGDOM 5 - - - - - - - 5 - - 5
VIETNAM 7 6 1 - - - - - - - 7 -
TOTAL 131 48 37 - - - - 3 42 2 113 18
* Institute for Animal Health, Pirbright Laboratory, Woking, Surrey GU24 0NF
VI/ELISA FMD (or SVD) virus serotype identified following virus isolation in cell culture and antigen
detection ELISA
FMD
foot-and-mouth
disease
SVD
swine vesicular
disease
NVD no FMD, SVD or vesicular stomatitis virus detected
NT not tested
RT-PCR reverse transcription polymerase chain reaction for FMD (or SVD) viral genome
** 1 sample from Turkey contained a mixture of type O and A FMDVs
WRLFMD Quarterly Report July-September 2011 2011
24
TABLE C: Antigenic characterisation of FMD field isolates by matching with vaccine strains by VNT from 1st
July to 30th September 2011
Type O:
Type A:
Type Asia 1:
Type SAT 1 and SAT 2:
M: the isolate was antigenically matched with the vaccine strain
N: the isolate showed no antigenic match with the vaccine strain
SAMPLE REF O 3039 O 4625 O CAMPOS O MANISA O TNN 24/84 O TAW 98 O TUR 5/09
AFG 41/2011 M M N M
AFG 6/2011 M M N M
DRK 31/2011 M M M M M M
IRN 34/2011 M M M M
IRN 50/2011 M M M M
IRQ 13/2010 M M M M
IRQ 4/2010 M M M M
ISR 4/2011 M M M M
ISR 07/2011 M M M M
KUW 1/2011 M N N M
KUW 2/2011 M N N M
PAK 62/2011 M M M M M M
PAK 84/2011 M M M M M M
TAI 2/2011 M M M N M M
TAI 7/2011 M M N N M M
VIT 18/2010 M M M N M M
VIT 23/2010 M M N N M M
Vaccine matching studies for type O FMDV by VNT-WRL FMD
SAMPLE REF A IRN 87 A IRN 2005 A MAY 97 A SAU 41/91 A SAU 95 A TUR 06 A22 IRQ
AFG 12/2011 N N N N N
AFG 34/2011 N N N M N
IRN 36/2011 N N M M
IRN 45/2011 N N M N
IRQ 5/2010 N M M M
PAK 86/2011 M N M M
Vaccine matching studies for type A FMDV by VNT-WRL FMD
SAMPLE REF SEROTYPE Asia 1 IND 8/79 Asia 1 SHAMIR Asia 1 WBN
117/85
AFG 39/2011 ASIA1 N M N
AFG 45/2011 ASIA1 N N N
Vaccine matching studies for type Asia 1 FMDV by VNT-WRL FMD
SAMPLE REF SEROTYPE SAT 1 RHO SAT 2 ERITREA SAT 2 ZIM
BOT 4/2011 SAT1 M
BOT 1/11 SAT2 N N
ZIM 5/2010 SAT2 N M
ZIM 6/2010 SAT2 N M
Vaccine matching studies for type SAT 1 and SAT 2 FMDV by VNT-WRL
WRLFMD Quarterly Report July-September 2011 2011
25
Annex 2. Recent FMD Publications cited by PubMed
1: Jamal SM, Ferrari G, Ahmed S, Normann P, Belsham GJ. Molecular characterization of serotype Asia-1 foot-
and-mouth disease viruses in Pakistan and Afghanistan; emergence of a new genetic Group and evidence for a
novel recombinant virus. Infect Genet Evol. 2011 Oct 1. [Epub ahead of print] PubMed PMID: 21983559.
2: Wang D, Fang L, Liu L, Zhong H, Chen Q, Luo R, Liu X, Zhang Z, Chen H, Xiao S. Foot-and-mouth disease
virus (FMDV) leader proteinase negatively regulates the porcine interferon-λ1 pathway. Mol Immunol. 2011
Oct 3. [Epub ahead of print] PubMed PMID: 21975014.
3: Luo J, Du J, Gao S, Zhang G, Sun J, Cong G, Shao J, Lin T, Chang H. Lentviral-mediated RNAi to inhibit
target gene expression of the porcine integrin αv subunit, the FMDV receptor, and against FMDV infection in
PK-15 cells. Virol J. 2011 Sep 7;8:428. PubMed PMID: 21899738; PubMed Central PMCID: PMC3183033.
4: Lin T, Shao JJ, Du JZ, Cong GZ, Gao SD, Chang H. Development of a serotype colloidal gold strip using
monoclonal antibody for rapid detection type Asia1 foot-and-mouth disease. Virol J. 2011 Sep 1;8:418. PubMed
PMID: 21880157; PubMed Central PMCID: PMC3183032.
5: Jaworski JP, Compaired D, Trotta M, Perez M, Trono K, Fondevila N. Validation of an r3AB1-FMDV-NSP
ELISA to distinguish between cattle infected and vaccinated with foot-and-mouth disease virus. J Virol
Methods. 2011 Sep 19. [Epub ahead of print] PubMed PMID: 21946290.
6: Liu XS, Wang YL, Zhang YG, Fang YZ, Pan L, Lu JL, Zhou P, Zhang ZW, Jiang ST. Identification of H-2d
Restricted T Cell Epitope of Foot-and-mouth Disease Virus Structural Protein VP1. Virol J. 2011 Sep 7;8:426.
PubMed PMID: 21896206; PubMed Central PMCID: PMC3179754.
7: Ma LN, Zhang J, Chen HT, Zhou JH, Ding YZ, Liu YS. An overview on ELISA techniques for FMD. Virol
J. 2011 Sep 4;8:419. PubMed PMID: 21888667; PubMed Central PMCID: PMC3180423.
8: Sanson RL, Gloster J, Burgin L. Reanalysis of the start of the UK 1967 to 1968 foot-and-mouth disease
epidemic to calculate airborne transmission probabilities. Vet Rec. 2011 Sep 24;169(13):336. Epub 2011 Aug
16. PubMed PMID: 21846685.
9: Sariya L, Thangthumniyom N, Wajjwalku W, Chumsing W, Ramasoota P, Lekcharoensuk P. Expression of
foot and mouth disease virus non-structural polyprotein 3ABC with inactive 3C(pro) in Escherichia coli. Protein
Expr Purif. 2011 Nov;80(1):17-21. Epub 2011 Jul 24. PubMed PMID: 21810474.
10: Burks JM, Zwieb C, Müller F, Wower IK, Wower J. In silico analysis of IRES RNAs of foot-and-mouth
disease virus and related picornaviruses. Arch Virol. 2011 Oct;156(10):1737-47. Epub 2011 Jun 17. PubMed
PMID: 21681504.
11: Vanlandschoot P, Stortelers C, Beirnaert E, Ibañez LI, Schepens B, Depla E, Saelens X. Nanobodies®: New
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.
WRLFMD Quarterly Report July-September 2011 2011
28
High Priority O Manisa (covers panasian topotype)
O BFS or Campos
A24 Cruzeiro
Asia 1 Shamir
A Iran-05
A22 Iraq
SAT 2 Saudi Arabia (or equivalent)
(not in order of importance)
A15 Bangkok related strain
A87 Argentina related strain
C Noville
SAT 2 Kenya
SAT 1 Kenya
SAT 3 Zimbabwe
A Kenya (not in order of importance)
Medium Priority
Low Priority
A Eritrea
A Iran ’96
SAT 2 Zimbabwe
A Iran 87 or A Saudi Arabia 23/86 (or equivalent) SAT 1 South Africa
A Malaysia 97 (or Thai equivalent such as A/NPT/TAI/86) A Argentina 2001
O Taiwan 97 (pig-adapted strain or Philippine equivalent)
A Iran ’99
(not in order of importance)
Annex 3. RECOMMENDATIONS FROM WRLFMD ON FMD VIRUS STRAINS TO BE INCLUDED IN FMDV ANTIGEN BANKS – September 2011
