Trichinella spp and clonorchis sinensis - OIE: Home spp and clonorchis sinensis Liu Mingyuan OIE...
Transcript of Trichinella spp and clonorchis sinensis - OIE: Home spp and clonorchis sinensis Liu Mingyuan OIE...
Trichinella spp and clonorchis sinensis
Liu Mingyuan
OIE Collaborating Centre for Food-Borne Parasite from the Asian-Pacific Region
Institute of Zoonosis, Jilin University, China
In the world
• > 150 animals species can be infected• > 10030 human cases, estimated more than 10 million people
infected. ICT reported 1995-1997.
In the world
• > 0.570 billion Euro in EU, 1 billion US$ in USA, 20 billion US$ in China for pig inspection
Pork product in world
China
European UnionUSA
Russia
Mexico
South Africaothers
0.73 billion pig slaughter
Trichinellosis in China
• > 14 mammal animal species infected.• > 27 thousand human cases since 1964, 40 millions
people with sera-positive (2005, national surveillance).• > 0.64 billion pigs for Trichinella inspection per year.
20 millions 10 years ago, 1995
9 micro-setalite markers and 1/5 mitochondrion genome. More than 400 isolates in the world cooperated with USDA, Dr. Benjamin
Trichinoscopy: 3-5 /g
Digestion: 3/g
Serological methods: 0.01/g
What’s the
problem
More than 1.4 billion pigs were slaughteredin world each year.
ES antigen
Life cycle
Purpose of the study
Pigs antibody detection
Blind area
0 3 9 12 15 18 21- 35 (days)
ES antigen
Life cycle
Purpose of the study
Pigs antibody detection
Blind area
0 3 9 12 15 18 21- 35 (days)
Positive genes (clones) from 6h old ML in intestine cDNA library
Code
Number
Clones
Member
Homology analysis of deduced protein
T626-55 20 Cystatin like protein (Trichinella spiralis) [ABY60755.1], 100%
T626- 1 2 Putative porin precursor (Trichinella spiralis) [ABY60749.1], 100%
T626-19 1 Putative serine protease (Trichinella spiralis) [ABY60762.1], 100%
T626- 7 1 No significant similarity
T626-16 1 BAC clone TS195-31H12 from chromosome DNA (Trichinella spiralis)
[AC193814.3], 96%
T626-20 1 mitochondrion DNA (Trichinella spiralis) [AF293969.1], 98%
T626-26 1 Hypothetical protein Bm1_10535 (Brugia malayi) [EDP37588.1], 56%
T626-29 1 Rieske iron-sulfur protein 1 (Graphocephala atropunctata) [ABD98746.1],
70%
T626-30 1 Temporarily assigned gene name protein 59 (Caenorhabditis elegans)
[AAB52260.3], 60%
T626-32 1 Hypothetical protein TRIADDRAFT_53524 (Trichoplax adhaerens)
[EDV28185.1], 53%
T626-33 1 Ubc protein (Rattus norvegicus) [AAI03478.1], 92%
T626-42 1 GM13181 protein (Drosophila sechellia) [EDW44127.1], 95%
T626-48 1 Putative ATP binding protein (uncultured marine bacterium Ant4E12)
[ABC25270.1], 48%
From Ad3 cDNA library
Clone name (Identical clones)
Accession no.Size(bp/aa)
Sequence similarity Accession no.BLASTXE value
Ad5 (2) DQ864973 1307/373 T. spiralis serine proteinase inhibitor AAF63473 0.0
WN10(23) EU263325 1352/406 T. spiralis hypothetical ORF 9.10 AAB48491 2e-135
Ad147 (4) EU331362 950/237 T. spiralis hypothetical ORF 9.10 AAB48491 8e-12
Ad53(1) EU263318 1453/451 T. spiralis 53 kDa excretory/secretory antigen AAA97512 7e-11
Ad67(1) EU263319 1095/312 Trichuris trichiura putative porin precursor AAC04763 2e-11
Ts Adsp-1(1) EU263326 589/193
Trypsin-like serine protease family AAK16516
2e-24
Ts Adsp-2(3) EU263327 1594/429 3e-44
Ts Adsp-3(1) EU263328 1375/429 3e-46
Ts Adsp-4(1) EU263329 1539/429 5e-46
Ts Adsp-5(5)(L23)
EU263330 1534/429 2e-46
Ts Adsp-6(1) EU263331 1205/370 4e-35
Ts Adsp-7(3) EU263332 1372/429 3e-44
Ts Adsp-8(1) EU263333 1399/429 3e-44
Ad42(1) EU263322 907/296 Caenorhabditis elegans paramyosin NP_492085 1e-69
Ad71(1) EU331363 751/243 Plasmodium yoelii Ran-binding protein EAA19671 3e-07
Ad76(1) EU263309 886/209 Caenorhabditis elegans calcium-sensing receptor NP_501400 1e-21
Ad62(1) EU263308 1165/388 No sequence similarity - -
Ad2(1) EU263321 735/174 No sequence similarity - -
From NBL cDNA library
Clone name
(identical
clones)
Accession
no.Size
(bp/aa)Sequence similarity Accession no.
BLASTX
E value
NBL84 (2) EF041139 1379/459 T. spiralis glutamic acid rich
protein cNBL 1500
T. spiralis glutamic acid rich
protein cNBL 1700
AAM19759
AAM19760
0.0
0.0
NBL122 (2) DQ864973 1307/373 T. spiralis serine proteinase
inhibitor
AAF63473 0.0
NBL39 (2) EU263320 474/117 T. spiralis hypothetical ORF
11.30 precursor
AAB48488 3e-45
NBLWN18 (70) - 1587/465 T. spiralis newborn
larvae-specific
serine protease SS2
AAK16520 1e-58
NBL50 (2) EU263319 1095/312 Trichuris trichiura putative
porin precursor
AAC04763 2e-11
NBL43(1) EU263324 1276/425 Homo sapiens heat shock
protein HSP 90-alpha 2
CAI64495 e-166
NBLWN5(1) EU263316 1552/475 Plasmodium yoelii
glutamine-asparagine rich
protein
EAA18721 9e-13
NBLWN11(1) EU263317 1540/389 Caenorhabditis elegans
putative RNA binding G-
patch domain protein
NP_497893 7e-24
From ML cDNA library
Clone name
(identical
clones) Accession
no.
Size
(bp/aa)Sequence similarity
Accession
no.
BLAST
X
E value
MLWM5 (10) DQ864973 1307/373 T. spiralis serine proteinase
inhibitor
AAF63473 0.0
ML42(2) EU263312 678/170 T. spiralis hypothetical ORF 17.20
T. pseudospiralis 21 kDa ES protein
AAB48489
AAF79206
3e-85
2e-63
ML3(1) EU263323 671/158 Ostertagia ostertagi globin-like ES
protein F6
CAD20463 2e-07
ML59(1) EU263313 447/113 Arabidopsis thaliana 60s acidic
ribosomal protein P1
BAB11203 9e-12
ML41(1) EU263311 563/153 Dunaliella tertiolecta nucleoside
diphosphate kinase
AAK38732 2e-56
ML63(1) EU263314 1170/192 Homo sapiens putative G-protein coupled
receptor SH120
CAI13224 9e-43
ML1(1) EU263310 1311/437 Mus musculus nuclear matrix protein
SNEV
NP_598890 e-135
ML64(1) EU263315 767/199 No sequence similarity - -
T.spiralis-N10-AAO17050 TSNBL.DNaseII-8.AY790261
TSNBL.DNaseII-3.AY790256 TSNBL.DNaseII-9.AY790262 TSNBL.DNaseII-5.AY790258 T.spiralis-NBLSS1-AAK16519
TSNBL.DNaseII-4.AY790257 TSNBL.DNaseII-1.AY790254 TSNBL.DNaseII-2.AY790255
TSNBL.DNaseII-6.AY790259 TSNBL.DNaseII-7.AY790260
TSNBL.DNaseII-10.AY790263 TSNBL.DNaseII-11.AY790264
P43-ISS534 TSAd.DNaseII-10bankit690445 TSAd.DNaseII-8bankit703732 TSAd.DNaseII-9bankit690443
TSAd.DNaseII-7bankit703730 TSAd.DNaseII-5bankit690441 TSAd.DNaseII-3bankit703724 TSAd.DNaseII-4bankit690437 TSAd.DNaseII-2bankit690427 TS.Ad-AAK85403 TSAd.DNaseII-1bankit703712
0.1
Finding of DNase II families in T. spiralis
T3223-6 gene
Macrophages launch DNA from genome or mitochondrion DNA to catch and kill bacteria. Streptococcus can secrete DNase to digest
the DNA for escaping
(一)立项依据
INFγ
Quick copy pathogensbacteria、virusprotozoa、fungi
IL4, IL13
Mutiple cell pathogensHelminth, tumor
Th1
Pre-inflammationIL6, IL12, TNF,
INFγ, IL1 , ROI
Th2
Anti-inflammationIL10, TGFβ, IL4, IL5,
IL13
47
protozoa
(一)立项依据
Th1
促炎反应IL6, IL12, TNF,
INFγ, IL1 , ROI
Th2
抑炎反应IL10, TGFβ,
IL4, IL5, IL13
炎症性肠病(IBD)Ⅰ型糖尿病多发性硬化症
48
INFγ IL4, IL13
Quick copy pathogensbacteria、virusprotozoa、fungi
Mutiple cell pathogensHelminth, tumor
Liver damage
Positive clones selected
Number Code Protein Homology (%) Clones
9-9 glycine rich antigen 2 (Clonorchis sinensis) [AAM18463.1] 87% 11
16-26 proline rich antigen 2 (Clonorchis sinensis) [AAM18465.1] 55% 10
12-6 proline rich antigen 2 (Clonorchis sinensis) [AAM18465.1] 84% 2
12-4 antigen Cs44 (Clonorchis sinensis) [AAD33058.1] 98% 5
9-27 antigen Cs44 (Clonorchis sinensis) [AAD33058.1] 53% 3
16-4 predicted protein (Nematostella vectensis) [XP_001634591.1]
39% 7
9-16 transcription elongation factor GreA (Bartonella quintana str.
Toulouse) [YP_032532.1]32% 1
12-1 similar to NM_132090 CG3446 gene product in Drosophila melanogaster (Schistosoma japonicum) [AAP05955.1]
52% 1
16-28 predicted protein (Nematostella vectensis)[XP_001627036.1]
27% 1
16-3 PREDICTED: hypothetical protein (Pan troglodytes) [XP_001137791.1]
30% 1
J31 SJCHGC06649 protein (Schistosoma japonicum) [AAW25164.1]
60% 1
16-10 SJCHGC02535 protein (Schistosoma japonicum) [AAW25739.1]
43% 1
12-5 Unknown 1