th International Conference and Expo on …...chemistry. A recognized pioneer in scientific...

PROTEOMICS AND MOLECULAR MEDICINE

November 26-28, 2018 Dublin, Ireland

12th International Conference and Expo on

S C I E N T I F I C P R O G R A M

conferenceseries.com

SCIENTIFIC PROGRAM

Monday, 26th November DAY 1Monday, 26th November

08:30-09:00 Registrations

09:00-09:30 Introduction

09:30-09:50 COFFEE BREAK

09:50-11:50 Meeting Hall 01

KEYNOTE LECTURES

MEETING HALL 01 MEETING HALL 02

11:50-13:10 Talks On: Proteomics from Discovery to Function

Talks On: Proteomics and its Research

Post-translational modifications & signal transduction Biopharmaceuticals and its applications

Top down & bottom up proteomics Proteomics in structural and glycobiology

Discovery & targeted proteomics Plant, animal and environmental proteomics

Quantitative proteomics Proteomics in food & nutrition

13:10-13:15 GROUP PHOTO

13:15-14:00 LUNCH BREAK


14:00-16:00 Talks On: Mass Spectrometry in Proteome Research

Talks On: Protein Expression and Analysis

Mass spectrometry for protein analysis Gel-free & based proteomics techniques

Mass spectrometry ionization methods Protein characterization and profiling

Mass spectrometry applications Protein identification

Molecular imaging by mass spectrometry Functional proteomics and recombinant proteins

Protein identification and validation Protein Biochemistry

Mass spectrometry techniques Protein Interaction


MEETING HALL 01 (16:20-17:00) MEETING HALL 01 (17:00-18:00)

Young Researchers in Proteomics and Molecular Medicine

Workshop

Visit: https://www.proteomicsconference.com/

SCIENTIFIC PROGRAM

Tuesday, 27th November DAY 2Tuesday, 27th November


KEYNOTE LECTURES



10:50-12:50 Talks On: Molecular Diagnostics and Devices

Talks On: Proteomics and Molecular Medicine

Molecular diagnostics Applied proteomics and molecular medicine

Cancer molecular markers Molecular medicine and personalized healthcare

Immuno-oncology biomarkers Current advances and clinical aspect of molecular medicine

Liquid biopsy technologies and applications Pathology and molecular medicine

PCR and NGS-based molecular diagnostics Detection and characterization of circulating biomarkers

Molecular diagnostics for infectious disease Best Practices in Personalized and translational medicine



13:35-15:55 Talks On: Molecular Medicine and Diagnostics

Talks On: Precision Medicine and Immuno-Oncology

Omics technology for cancer immunotherapy Genomics for pharma R&D

Precision medicine Cancer immunotherapy

Regulatory compliance in molecular diagnostics

Preclinical and translational immuno-oncology

Chromosomal mosaicism in humans Immuno-oncology biomarkers and companion

Multiplexing single cell analysis: A combined effort Immunology and drug discovery

Molecular medicine, biology and pathology NGS assay selection, validation and compliance

Stem cell & regeneration Coverage advanced diagnostics



Poster Presentations Workshop


SCIENTIFIC PROGRAM

Wednesday, 28th November DAY 3Wednesday, 28th November


KEYNOTE LECTURES



10:50-12:50 Talks On: Proteomics for Bioinformatics

Talks On: Proteomics in Computational Systems Biology

Structural & metagenomics bioinformatics Systems biology: Global regulation of gene expression

Metabolomics bioinformatics for life sciences Systems biology in drug development

Bioinformatics, data analysis & pattern recognition Cancer systems biology and pharmacology

Molecular modelling and drug design Systems biologists & biomedicine

Computational molecular evolution Network & synthetic Biology

Biomedical engineering & imaging Biological computations



13:35-15:55

Talks On: Proteomics in Biochemistry and Molecular Biology

Talks On: Proteomics and its Medicinal Research

Biochemistry of multimolecular complexes Biomedical informatics & technology

Molecular engineering & microbiology Preventive & personalised medicine

Molecular modeling & protein structure prediction Neuroendocrinology & proteomics

Clinical & structural biochemistry Immunology & tissue engineering

Molecular & analytical biochemistry Pharmaceutical and medicinal research

CRISPR-based gene editing for drug discovery & targeted therapies

Proteomics in cardiovascular biology and medicine

Nano & medical biochemistry Medical genetics & biochemistry



Young Researchers in Proteomics and Molecular Medicine

Workshop

Awards & Closing Ceremony


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BIOGRAPHY: Henry M. Sobell completed his studies at Brooklyn Technical High School (1948-1952),

Columbia College (1952-1956), and the University of Virginia School of Medicine (1956-

1960). Instead of practicing clinical edicine, he then went to the Massachusetts Institute of

Technology (MIT) to join Professor Alexander Rich in the Departent of Biology (1960-

1965), where, as a Helen Hay Whitney Postdoctoral Fellow, he learned the technique of

single crystal X-ray analysis. He then joined the Chemistry Department at the University

of Rochester, having been subsequently jointly appointed to both the Chemistry and

Molecular Biophysics departments (the latter at the University of Rochester School of

Medicine and Dentistry), becoming a full tenured Professor in both departments (1965-

1993). He is now retired and living in the Adirondacks in New York, USA.

Title: The centers of premeltons signal the beginning and ends of genes

Henry M. Sobell

University of Rochester,

USA

BIOGRAPHY: Klaus Ammann. University of Bern. Born: 6 December 1940 in Bern, Thesis: Vegetation

and Glacier history, summa cum laude in 1972 Bern University. Assisting to Swiss Atlas of

Plant Distribution, first Swiss research department on Lichenology (chemosystematics and

bio-monitoring air pollution). Teaching in plant biodiversity and vegetation ecology,

director of the Bern Botanic Garden 1996-2006 and Prof. h.c. 2000. Sabbatical stays:

Bergen, Norway, Duke University in North Carolina, University of the West Indies in

Jamaica, and Missouri Botanical Garden in St. Louis. Emeritus 2006, guest prof. Delft

University of Technology, Sabanci University in Istanbul and Tehran 2017. Moderating

‘Berne Debates’, early blog on plant biotechnology, presently—ASK-FORCE at PRRI

FORUM at European Federation of Biotechnology, KLAUSBLOG at Black Sea

Biotechnology Association and since 2017 frequent contributions for literature blog of

Klaus Jany.

Title: The international debate on the regulation of the new gene editing methods

Klaus Ammann

University of Bern,

Switzerland

BIOGRAPHY: Li Ni is currenctly working for the Department of Bioinformatics and Computational Biology, at

The Jackson Laboratory, USA.

Title: Functional annotation of proteoforms in the Mouse Genome Database using

the Protein Ontology

Li Ni

The Jackson Laboratory,

USA

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BIOGRAPHY: Shanrong Zhao, Computational Biology. Pfizer Worldwide Research and Development.

Cambridge, USA. More than twenty years of experience in computational biology with

strong interdisciplinary skills in computer science, biostatistics, computational biology and

chemistry. A recognized pioneer in scientific computing, especially in next generation

sequencing, big data analysis, cloud computing and machine learning. Have led multiple

cross-functional teams to successfully implement pipelines and informatics systems,

including QuickRNASeq, QuickIsoSeq, QuickMIRSeq, Rainbow, Stormbow and

ImmunoPortal, for large-scale data analysis to support drug discovery.

Shanrong Zhao

Pfizer Worldwide

Research and

Development, USA

BIOGRAPHY: Gary Hardiman is the Scientific Director of the MUSC Center for Genomics Medicine

Bioinformatics. He is also Head, Laboratory for Marine Systems Biology, Hollings Marine

Laboratory and an Adjunct Professor & Visiting Scholar, Grice Marine Laboratory, College

of Charleston, SC, USA. He is an editorial board member for the journals

Pharmacogenomics, Expert Rev Mol Diagn., Genes, & High-Throughput. Prof. Hardiman's

research encompasses three areas: gene environment interactions, cystic fibrosis trans-

membrane (CFTR) gene modifiers, and systems biology tool development for big data

analysis.

Title: miRmapper: A tool for interpretation of miRNA-mRNA interaction networks

Gary Hardiman

Medical University of South

Carolina, USA

BIOGRAPHY:

Klaus Ammann. University of Bern. Born: 6 December 1940 in Bern, Thesis:

Vegetation and Glacier history, summa cum laude in 1972 Bern University.

Assisting to Swiss Atlas of Plant Distribution, first Swiss research department

on Lichenology (chemosystematics and bio-monitoring air pollution). Teaching

in plant biodiversity and vegetation ecology, director of the Bern Botanic

Garden 1996-2006 and Prof. h.c. 2000. Sabbatical stays: Bergen, Norway, Duke

University in North Carolina, University of the West Indies in Jamaica, and

Missouri Botanical Garden in St. Louis. Emeritus 2006, guest prof. Delft

University of Technology, Sabanci University in Istanbul and Tehran 2017.

Moderating ‘Berne Debates’, early blog on plant biotechnology, presently—

ASK-FORCE at PRRI FORUM at European Federation of Biotechnology,

KLAUSBLOG at Black Sea Biotechnology Association and since 2017 frequent

contributions for literature blog of Klaus Jany.

Title: A Golden (Rice) Opportunity

Klaus Ammann

University of Bern,

Switzerland

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BIOGRAPHY: Magnus S Magnusson, Research Professor. PhD in 1983, University of Copenhagen.

Author of the T-pattern model and the corresponding detection algorithms in the

THEMETM (PatternVision). He has focused on real-time organisation of behavior, co-

directed DNA analysis, published numerous papers and given invited talks and keynotes at

universities in Europe, USA and Japan and at international conferences in ethology,

psychology, neuroscience, mathematical sciences, science of religion, proteomics and

mass spectrometry. Associate Professor and Deputy Director 1983-1988 in the Museum of

Mankind, National Museum of Natural History, Paris. Repeatedly invited Professor in

psychology and ethology (the biology of behavior) at the University of Paris, V, VIII and

XIII. Since 1991, Founder and Director of the Human Behavior Laboratory (hbl.hi.is),

University of Iceland. He works in collaboration between now 32 universities on

Methodology for the Analysis of Social Interaction (MASI) initiated in 1995 at the

Sorbonne, Paris based on “Magnusson’s analytical model.

Title: T-patterns and self-similarity from the RNA world to human mass-societies

Magnus S Magnusson

University of Iceland,

Iceland

BIOGRAPHY: Laszlo Takacs is the Founder and CSO of Biosystems International, Professor, Department

of Human Genetics at Medical Center of the University of Debrecen, Hungary, Foreign

Member of the Hungarian Academy of Sciences. He received his education at

Semmelweis Medical University in Budapest. Experience includes over 10 years of

academic research in Hungary and at the NCI, NIH in the US and 20 years in industry at

Amgen Inc. and Pfizer Inc. In 2004, Laszlo Takacs co-founded Biosystems International.

Publications include over 70 peer reviewed scientific papers, book chapters and

commercially oriented materials. Laszlo Takacs is an inventor on 10 patents and patent

applications. His current interest is human plasma protein epitome profiling for the

discovery of new diagnostics in cancer and chronic diseases via mAb proteomics.

Title: Future of blood plasma profiling for medical diagnostics: A review of current

trends

Laszlo Takacs

University of Debrecen and

Biosystems International

Kft

BIOGRAPHY: Victoria completed her BSc and MSc from the University of York and recieved her

PhD from Durham University in 2017. She has since been carrying out

postdoctoral studies within Durham University.

Title: Protein Carbamylation: The discovery of a carbon dioxide control system

Victoria Linthwaite

Durham University,

England

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BIOGRAPHY:

Vaios Nikolopoulos is a Biologist MSc and as a PhD candidate, has

his expertise in molecular biology and diagnostics. His passion is to combine more aspects and functions of molecules and their pathways

in order to see the big picture in a pathologic state either this is a

cancerous process or diabetes etc. Currently he is working in protein purification and ligand binding studies while studying crystallography

and also elaborates with other colleagues in various clinical studies.

His goal is to be a part of this “thinking tank” community to share his inquiring mind and to absorb new ideas in this highly competitive area

of biosciences.

Title: Recombinant Cyclins and their CDKs in Escherichia coli: Expression and

Purification for soluble active products and characterization with putative inhibitors.

Nikolopoulos Vaios

University of Thessaly,

Greece

Biography:

Shanrong Zhao, PhD Director, Computational Biology. Pfizer Worldwide Research and Development. Cambridge, USA. More than twenty years of experience in

computational biology with strong interdisciplinary skills in computer science,

biostatistics, computational biology and chemistry. Shanrong got his Ph.D from The Chinese Academy of Sciences, and a second M.S in computer science from San

Diego State University. He is a recognized pioneer in next generation sequencing,

big data analysis, cloud computing and machine learning. In the past five years, he published more than 20 papers in the field of RNA sequencing and was invited to

speak at more than 30 national and international meetings. Shanrong has led

multiple cross-functional teams to successfully implement pipelines and informatics systems, including QuickRNASeq, QuickIsoSeq, QuickMIRSeq, Rainbow,

Stormbow and ImmunoPortal, for large-scale genomic data analysis to support drug

discovery.

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BIOGRAPHY: Marlena Winter completed her Bachelor´s degree in biology from Freie Universität

Berlin in 2014 and her Master´s degree in animal ecology from Georg-August-

University Göttingen in 2016. Afterwards, she worked in the animal ecology group as a

research assistant until starting her doctoral studies at the Universität Hamburg in 2017.

Presently, she is phD student in the molecular evolutionary biology group investigating

the Na,K-ATPase of the large milkweed bug on protein level.content and G10398A

polymorphism in non-small cell lung cancers.

Title: Elucidating the functional roles of tissue specific Na,K-ATPase α/β-subunit

combinations in the large milkweed bug Oncopeltus fasciatus

Marlena Winter

1Universität Hamburg,

Germany

BIOGRAPHY: Graham Ball is Professor of Bioinformatics at Nottingham Trent University and

CSO of CompanDX UK Ltd. He is Associate Director the John Van Geest Cancer Research Centre and biostatistics lead on three clinical projects. He has

been involved in the development and validation of machine learning algorithms

based on Artificial Neural Networks for the last 18 years. He has 145 journal papers and 5 patents in this area. After a PhD (UN funded) and a Post Doc

modelling environmental interactions with ANNs at NTU, in 2000 he shifted the

focus of his analysis to proteomic and transcriptomic data; searching for proteins and genes associated with cancer. His current research interests are directed at the

use of machine learning techniques for the identification of biomarker panels,

pathway motifs and molecular drivers characterizing biological systems These include areas such as microbial pathogen host response, drivers and

characteristics of hallmarks of cancer, drivers of Alzheimer’s disease and

diagnostics of latent tuberculosis.

Title: Artificial Neural Network Algorithms For Biomarker Discovery, Pathway

Modelling and Drug Target Identification

Graham Ball

Nottingham Trent

University, UK

BIOGRAPHY: Inga Jamrozek received her BA degree in Bioinformatics and MA degree in Biotechnology from University of Gdansk, Poland. She is a third year PhD student in the

Intercollegiate Faculty of Biotechnology of University of Gdansk and Medical University

of Gdansk. Her major research interests in developing a model of GerA receptor and molecular mechanism of its function. This study is an interdisciplinary research conducted

with Laboratory of Molecular Bacteriology, Intercollegiate Faculty of Biotechnology of

UG and MUG.

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BIOGRAPHY: Jotham Yhi-pênê N'DO did this PhD work on viral hepatitis. The work of producing

publications in reference journals. We will be happy to come and share our modest experience

and receive for others.

Title: Phytochemistry, antioxidant, anti-inflammatory and hepatoprotective potential

of extracts of Acanthospermum hispidum DC (Asteraceae) against diethylnitrosamine-

induced hepatotoxicity in rats

Jotham Yhi-pênê University of

Ouagadougou, France

BIOGRAPHY: Dariusz Jacek Jakóbczak was born in Koszalin, Poland, on December 30, 1965. He

graduated in mathematics (numerical methods and programming) from the University of

Gdansk, Poland in 1990. He received the Ph.D. degree in 2007 in computer science from

the Polish – Japanese Institute of Information Technology, Warsaw, Poland. From 1991 to

1994 he was a civilian programmer in the High Military School in Koszalin. He was a

teacher of mathematics and computer science in the Private Economic School in Koszalin

from 1995 to 1999. Since March 1998 he has worked in the Department of Electronics and

Computer Science, Technical University of Koszalin, Poland and since October 2007 he

has been an Assistant Professor in the Chair of Computer Science and Management in this

department.

Title: Application of Hurwitz-Radon matrices in curve interpolation and almost-

smoothing

Dariusz Jacek Jakóbczak

Technical University of

Koszalin, Poland

BIOGRAPHY: I have 30 years of experience in the biotechnology, aquaculture and environment sectors. My

profile is mainly a developer profile, using the results of research to apply them to industrial

production processes, controlled, profitable, and safe to put on the market of quality products.Responsible for multidisciplinary teams, my objectives were the selection of species

and the development of production system in large volume, in different structures adapted to the

needs of each species (molluscs, Crustaceans, Fishes and Microalgae). My incorporation has been both with the public sector, research centers, IFREMER (France), IRTA, PEMARES

(Spain), ADOA, (Dominican Republic), ACFK (Florida, USA), as private companies, also

ensuring in many projects the technical transfer between the two sectors.

Title: “The solution is out there”, focus on microalgae

Frédéric Fonlut

Biotechnologies consultor,

Spain

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BIOGRAPHY: Jing-Doo Wang received the BS degree in Computer Science and Information Engineering

from the Tatung Institute of Technology in 1989, and the M.S. and Ph.D. degrees Computer

Science and Information Engineering from the University of Chung Cheng in 1993 and 2002

respectively. He has been with Asia University since spring 2003, where he is currently an

associate professor in the Department of Computer Science and Information Engineering, and

also holds a joint appointment with the Department of Bioinformatics and Medical

Engineering. His research interests are in the areas of bioinformatics, text mining for trend

analysis, class ambiguity analysis and cloud computing. He has developed a scalable

approach to extract maximal repeat patterns from a huge amount of sequential data via

MapReduce programming model and has applied for an U.S.A..

Title: Reducing the Gap between Phenotypes and Genotypes via Comparing Tagged

Whole Genomic Sequences

Jing-Doo Wang

China Medical University,

Taiwan

BIOGRAPHY: Jian Lu has completed his PhD at the age of 31 years from the University of Chicago

and Postdoctoral Studies from Departmetn of Molecular Biology and Genetics, Cornell

University, USA. He is a professor in the School of Life Sciences, Peking University,

China. He has published more than 25 papers in reputed journals and has been serving

as an editorial board member of Science Bulletin (English version).

Title: Adaptive evolution and functional regulation of uORFs in Drosophila

BIOGRAPHY: Blake is completing his PhD from Ross University School of Veterinary Medicine in St.

Kitts. His background is on postgenomics technologies and their applications in diagnostics

and selection indices.

Title: Ovine hepatic mitochondrial membrane proteome: assessing mechanisms of

seasonal weight loss tolerance using Blue Native PAGE coupled to Mass Spectrometry

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BIOGRAPHY: Saranyoo Ponnikorn had completed his PhD in Biochemistry from Mahidol University

Faculty of Science in 2011. He is lecturer in medical school and member of administrative staff as assistant to the Dean in academic affairs and medical education from Chulabhorn

International College of Medicine, Thammasat University. Morover, he also works with

private companies including Next Generation Genomics and Safe Fertility and PGD Center as clinical labolatory supervisor in genetic diagnosis since 2013. His research is

mainly focusing on the signaling pathway of stem cell and disease development such as

thalassemia and some skin disorder using proteomic strategies. He is also interested in the application of Thai herbal medicine and drug discovery under in vitro stem cell model and

developing the feasible and reliable genetic testing for reproductive healthcare.

Title: Deciphering the molecular mechanism of ineffective erthropoiesis in 𝛽 -

thalassemia/HbE from integrated proteomic analysis.

BIOGRAPHY: Mohd Mokhlesur Rahman has completed his Ph.D. from University Technology

Malaysia and postdoctoral studies from same University Faculty of Science. He is

the Head of the Laboratory of Institute of Community Health Development (i-

CODE), University Sultan Zainal Abidin. He has published more than 72 papers

in reputed journals and awarded 9 Gold medals from the national level products

innovation competitions. He has completed many students Ph.D. and M.Sc

students supervision and as well as has been serving as an editorial board member

of repute.

Title: Halal Insulin Nanoparticles: An Innovative and Painless Drug Delivery Patch

for Diabetics

BIOGRAPHY: Luz Elena Triana-Vidal has completed her PhD at the age of 28 years from Brasilia

University and postdoctoral studies from Brasilia University. She is the professor rearcher of University Libre Of Colombia, with foormation in protein biochemistry

and proteomics with an established experience in mass spectrometry and cell culture

She has published about bioprospection and has been reviewer of articles.

Title: Molecular diversity of the cutaneous proteome and peptidome of the frog

Dendropsophus columbianus

Luz Elena Triana-Vidal

University Libre of

Colombia, Colombia

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BIOGRAPHY: Blake is completing his PhD from Ross University School of Veterinary Medicine in St.

Kitts. His background is on postgenomics technologies and their applications in diagnostics

and selection indices.

Title: Proteomic characterization of dairy cattle plasma: Establishment of biomarkers

for endometritis

Blake Miller

University School of

Veterinary Medicine

BIOGRAPHY: Francis O. Atanu obtained his PhD from the University of Reading, United Kingdom in 2014,

where he worked in the Laboratories of Dr K.A. Watson and Prof I.M. Jones. He was a

Facility user at the Membrane Protein Laboratory (MPL) and Oxford Protein Production Facility (OPPF), both in Diamond Light Source, Harwell, United Kingdom, between 2012-

2013. Dr Atanu is currently a Lecturer/Research Scientist at the Department of Biochemistry, Kogi State University, Nigeria. Dr Atanu's honours and awards includes but not limited to

TETFund to undertake overseas Phd program, Faculty and Departmental Prices for academic

excellence. He is a member of local and international professional societies. He has co-authored peer reviewed journal articles published locally and internationally. Dr Atanu's

current researches focuses on biophysical characterisation of proteins, structure-function

characterisation of proteins, functional characterisation of phytochemicals used in management of human metabolic diseases and protozoal diseases, investigation of

biochemical mechanisms underlying toxicity of drugs and environmental toxicants.

Title: Sequence to structure and immunological analysis of MOMP from Chlamydiae

BIOGRAPHY: Tasiu Isah is a professional teacher and researcher with expertise in plant science and passion in improving the health and wellbeing. His open and contextual evaluation model based on

responsive constructivists creates new pathways for improving healthcare.

Title: Screening for effective evaluation of quality plant science research with emphasis

on tissue culture (plant), molecular biology and pharmaceutical biotechnology?

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BIOGRAPHY: Anil Batta is currently working as an Assoc. Professor, Department Of Medical

Biochemistry, Govt. Medical College.

BIOGRAPHY: Sarah I Y Ahmed has has graduated from Medica Laboratory Sciences from University of Khartoum, Khartoum, Sudan. She completed her MSc at the same University in the institute

of Endemic Diseases in the Medical Campus. She worked as a Lab scientst and a researsher

in different medical facilities in Sudan and Dubai.

.

BIOGRAPHY:

Pacint Moez is a Professor of Clinical Pathology AFM .She was awarded FP7 & many

national grants for Proteomics research. She is the director of AFM Proteomics lab & head

of Egypt Proteomic Science Association. She supervised many master & MD proteomics

thesis in Egypt and with International collaborators as well .She has organised many

workshops & participated in national & international proteomics conferences. Her main aim

is to introduce Proteomics science to Egyptian scientific community & to cooperate &

network with different international proteomics groups. She has published more than 22

papers in reputed journals.

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Biography: Sudarshan Kumar is working as scientist at National Dairy Research Institute Karnal,

India. He works on Mammary Gland Proteomics to identify the putative biomarkers for lactation related disorders in bovine. His lab uses high end nano-LC MS/MS TOF

platform and TQD for protein biomarker discovery and validation. The economically

important genes are cloned, expressed and purified from prokaryotic and eukaryotic host systems which are subjected to cell culture based functional characterization for

their application as therapeutics or diagnostics.

Biography: Ashish Shah is working in the area of insilico drug designing and synthetic medicinal

chemistry since last five years. He is pursuing research in the field of new molecule development for cancer disease since last three years. He has also published review as

well as research article relevant to his expertise. He has also presented poster on

insilico drug design in various national and international conferences.

Biography: Ajey Kumar Pathak has completed his Ph.D. in Computer Science and Information

Technology from Sam Higginbottom University of Agriculture and Technology, Allahabad, Uttar Pradesh, India and postdgraduate studies in Computer Science from

Madan Mohan Malviya Engneering College Gorakhpur, Uttar Pradesh, India. Apart

from these academics, he is post graduate in Physics from Avadh University, Faizabad, Uttar Pradesh, India. Presently, he is Senior Scientist at ICAR-National

Bureau of Fish Genetic Resources, Lucknow, Uttar Pradesh, India, a premier Fish

Genetic Resources institute under the aegis of Indian Council of Agricultural Research, India. He has published more than 30 papers in reputed journals and has

been serving as an editorial board member of repute.

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Biography: Subhashree Venu Gopal is currently working in Department of Integrative biology VIT University.

Organizing Committee Members


Boris ZaslavskyAnaliza, Inc. and Cleveland Diagnostics

USA

Magnus S MagnussonUniversity of Iceland

Iceland

Marwa EltoweissyUniversity of Göttingen

Germany

Nekane GuarrotxenaSpanish National Research Council

Spain

Judit OvádiHungarian Academy of Sciences

Hungary

Yuanpeng Janet Huang Rutgers University, USA

Sevgi Gezici Texas A&M University, USA

John Wilson Cold Spring Harbor Laboratory, USA

Steven Pelech Kinexus Bioinformatics Corporation, Canada

Uma Shankavaram National Institutes of Health, USA

Xusheng Wang St Jude Childrens Research Hospital, USA

Hesham H. Ali University of Nebraska , USA

Alexander Statsyuk Northwestern University, USA

Dharani Das Healthy Environments and Consumer Safety Branch, USA

Samson Jamesdaniel Wayne State University, USA

Savitha Parur Venkitachalam Western Michigan University, USA

Mounica Arias University of Antioquia, Colombia

Boris Zaslavsky Cleveland Diagnostics, USA

Stefan Kempa Berlin Institute for Medical Systems Biology - MDC Berlin, Germany

Judit Ovádi Hungarian Academy of Sciences, Hungary

Magnus S Magnusson University of Iceland, Iceland

Marwa Eltoweissy University of Göttingen, Germany

Nekane Guarrotxena Spanish National Research Council, Spain

Alon Savidor Weizmann Institute of Science, Israel

Federica Chiappori Istituto di Tecnologie Biomediche-Consiglio Nazionale delle Recerche, Italy

Mauro Baron Leica Microsystems, Italy

Bart Devreese Ghent University, Belgium

Amilcar Flores Morales University of Copenhagen, Denmark

Jill Barber University of Manchester, UK

PAST AFFILIATESPA

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Pavel Vítámvás Crop Research Institute, Czech Republic

Anna Shaliutina-Kolesova University of South Bohemia Ceské Budejovice, Czech Republic

Hamdi Uysal Ankara University, Turkey

Hana Ujcikova Institute of Physiology-Czech Academy of Sciences, Czech Republic

Peter Nilsson KTH-Royal Institute of Technology, Sweden

Peter Nilsson KTH-Royal Institute of Technology, Sweden

Sara Motta National Research Council, Italy

Patrícia Sampaio Tavares Veras Gonçalo Moniz Research Center- FIOCRUZ, Brazil

Patricia Renard University of Namur, Belgium

Alex Bayes Biomedical Research Institute Sant Pau, Spain

Mario Looso Max Planck Institute for Heart and Lung Research, Germany

Nadine Bongaerts Delft University of Technology, Netherlands

Lydia Siragusa Molecular Discovery Limited, UK

Thomas Schneider Philip Morris International, Switzerland Miguel Quintela-Fandino Spanish National Cancer Research Center, Spain

Andreu Soldevila Fabrega LeanBio, Spain

Alastair Waugh 3P Biopharmaceuticals, Spain

Carles Celma Lezcano Kymos Pharma Services, Spain

Tiziana Bonaldi European Institute of Oncology, Italy

Maria De Angelis University of Bari Aldo Moro, Italy

Jasmina N Jovanovic School of Pharmacy, UK

Huseyin Cimen Yeditepe University, Turkey

Stefanie Wienkoop University of Vienna, Austria

PAST AFFILIATESPA

ST A

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S


PAST AFFILIATESTamar Geiger Tel Aviv University, Israel

David Sheehan University Cork College, Ireland

Martine Cadene Centre de Biophysique Moléculaire, France

Claudine S Bonder University of South Australia, Australia

Fuad Fares University of Haifa, Israel

Eunjoo Kim Daegu Gyeongbuk Institue of Science and Technology (DGIST), South Korea

Jaime Jacqueline Jayapalan University of Malaya, Malaysia

Serhiy Souchelnytskyi Qatar University, Qatar

Vadim Govorun Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Russia

Akira Imaizumi Ajinomoto Co., Inc., Japan

Amilcar Perez-Riverol Sao Paulo State University, Brazil

Mohamad Khairi Zainol Universiti Malaysia Terengganu, Malaysia

Hasni Arsad Universiti Sains Malaysia, Malaysia

Carlos Eduardo A Souza Cisne University, Brazil

Diogo Ribeiro Demartini Laboratorio de Proteinas Toxicas UNIPROTE-MS Centro de Biotecnologia – UFRGS , Brazil

Jamal Alruwaili Vice Dean Faculty of Applied Medical Sciences Northern Border University Arar, Saudi Arabia

Nadeem A. Kizilbash Northern Border University, Saudi Arabia

Chin Chiew Foan University of Nottingham, Malaysia

Jianshe Zhang Changsha University, China

John F Cipollo Center for Biologics Evaluation and Research-USFDA, USA

Wendy Sandoval Genentech, Inc. South San Francisco, USA

Xuequn Chen School of Medicine, Wayne State University, USA

Alan J. Tackett University of Arkansas for Medical Sciences, USA

PAST

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Proteomics Reminisce



Glimpses of Proteomics Congress 2017

N o v e m b e r 1 3 - 1 5 , 2 0 1 7 P a r i s , F r a n c e


Molecular MedicineProteomics &

9th International Conference on

Bioinformatics

Proceedings of

conferenceseries.comJOINT EVENT

&

RegistrationsDay 1 November 13, 2017

Keynote ForumIntroductionTitle: Properties of membrane-less organelles and aqueous two-phase systemsBoris Zaslavsky, Cleveland Diagnostics, USATitle: Integrative analysis of post-translational protein S-nitrosylation in endothelial cellsBin Huang, Kaohsiung Medical University, Taiwan

Networking & Refreshment BreakTitle: The future of systems medicine: everything you always wanted to know about the “reality” of big data and AI “big mirages” but were afraid to ask Manuel Gea, Bio-Modeling Systems, FranceSessions: Mass Spectrometry in Proteome Research | Protein Expression and Analysis | Proteomics from Discovery to Function | Proteomics and Molecular MedicineSession Chair: Ida Chiara Guerrera, INSERM, FranceSession Co-chair: Bin Huang, Kaohsiung Medical University, Taiwan

Session IntroductionTitle: Strategy for determining clinical biomarker panelOliva Petra, Sanofi Genzyme, USATitle: Proteomics of rare genetic diseases: Impact of cystinosin mutations on protein stability and protein network by dynamic SILAC and interactomicsIda Chiara Guerrera, INSERM, FranceTitle: Dynamic changes in the skeletal muscle proteome during denervation-induced atrophyMarcus Krüger, University of Cologne, GermanyTitle: High-sensitivity, high-resolution MS-based quantitative proteomics by manipulation of protein isotope composition in vivoJean-Michel Camadro, Institut Jacques Monod, FranceTitle: Application of embryogenic mouse as a platform in identifying human missing proteinsBin Huang, Kaohsiung Medical University, Taiwan

Group PhotoLunch Break

Title: Sensitivity, specificity and accuracy of the targeted (SRM) and shotgun (panoramic) mass-spectrometry technologiesAlexander I Archakov, Institute of Biomedical Chemistry, RussiaTitle: Fusion protein raised antibodies for evaluating mass spectrometry resultsTheo Crosson, Proteintech Group Europe, UKTitle: Mixed proteome analysis to elucidate complex symbiotic interactionsWataru Aoki, Kyoto Univeristy, JapanSessions: Bioinformatics and Computational Biology | Biostatistics - An Approach to Bioinformatics | Immunology and Drug DiscoverySession Chair: Dharmendra K Yadav, Gachon University, South KoreaSession Co-chair: K Venkateswara Swamy, Dr. D Y Patil Biotechnology and Bioinformatics Institute, India

Session Introduction

Opening Ceremonyconferenceseries.com

Sunset 2

Title: Synthesis, biological evaluation, and molecular simulation studies of new arylated benzo[h]quinolines compounds as potential anticancer agentsDharmendra K Yadav, Gachon University, South KoreaTitle: From genomics to personalized healthcare Kathy Tzeng, Optum (UnitedHealth Group), USA

Networking & Refreshment BreakTitle: XERp a novel approach to variable selection for classification Mari van Reenen, North-West University, South Africa Title: Molecular dynamics simulations and ADME studies of benzopyran class of selective COX-2 inhibitors for inflammatory activitySaloni, Gachon University, South KoreaTitle: Molecular Dynamics based screening for Cag A protein: Using Quercus brantii extract substances as lead-likeFatemeh Khoddam, Islamic Azad University, Iran

Panel Discussion

Day 2 November 14, 2017Sunset 2

Keynote ForumTitle: Challenging drug target for moonlighting and chameleon proteinsJudit Ovádi, Hungarian Academy of Sciences, HungaryTitle: CITe-Id as a novel chemoproteomic platform to characterize covalent kinase inhibitorsJarrod A Marto, Harvard Medical School, USATitle: From protein to human cities the first and only large-brain mass-societies: structural and functional self-similarity and translation symmetry across time and space?Magnus S Magnusson, University of Iceland, Iceland

Networking & Refreshment BreakSessions: Protein Expression and Analysis | Omics Data Integration and Databases | Mass Spectrometry in Proteome Research | Proteomics and its Medicinal ResearchSession Chair: Marwa Eltoweissy, Georg August Medical University of Göttingen, Germany and Alexandria University, EgyptSesstion Co-Chair: Pavlina Dolashka, Bulgarian Academy of Sciences, Bulgaria

Session IntroductionTitle: Short-time increase of glucose concentration in PDS results in extensive removal and high glycation level of vital proteins during continuous ambulatory peritoneal dialysisMarwa Eltoweissy, Georg August Medical University of Göttingen, Germany and Alexandria University, EgyptTitle: Proteomics analysis of Alzheimer's and antitumor activity of glycoproteins against bladder carcinoma permanent cell lines Pavlina Dolashka, Bulgarian Academy of Sciences, BulgariaTitle: Integration of multilevel OMICs data based on the identification of regulatory modulesTheresia Conrad, Hans-Knöll-Institute, GermanyTitle: A proteomics strategy to analyze complex traits and gene functionsYinghong Pan, The National Key Facility for Crop Gene Resources and Genetic Improvement - ICS CAAS, ChinaTitle: STRING v9.1: Edges and nodes provide global functional association to protein crosstalk and integration in urinary proteomes of prostate cancerLeonora V Autus-Geniston, United Bayanihan Foundation and St. Paul University-Quezon City, Philippines

Lunch BreakTitle: Structural view on substrate specificity of dipeptidyl peptidase III (DPP III)Altijana Hromic, University of Graz, AustriaTitle: Proteomic and immunofluorescent evidence for and against the astrocyte-to-neuron lactate shuttleDariusz Rakus, University of Wrocław, Poland

Sessions: Bioinformatics and Computational | Bioinformatics Algorithms & Databases Session Chair: Enass Y Osman, Tanta University, EgyptSesstion Co-Chair: Gauri Garg Dhingra, University of Delhi, India

Session IntroductionTitle: Molecular modeling, docking, dynamics and simulation of deguelin and its derivatives with cyclin D1 and cyclin E in cancer cell signaling pathway K Venkateswara Swamy, Dr. D Y Patil Biotechnology and Bioinformatics Institute, IndiaTitle: Drug Repositioning System Using the power of network analysis and machine learning to predict new indications for the approved drugs “Drug Repositioning and rate the level of the drug similarity"Sherief El Rweney, Royal Holloway, University of London

Poster PresentationsNetworking & Refreshment Break

Panel Discussion

Day 3 November 15, 2017Sunset 2

Sessions: Mass spectrometry in Proteome Research | Proteomics in Biochemistry and Molecular Biology | Proteomics and Molecular MedicineTitle: MSCM- Multiple selective proteo nano cluster mesh coating CD’s agonist/antagonistLungu N. Claudiu, Babes-Bolyai University, RomaniaTitle: Isolation and quantification of nanovesicles in isoproterenol-induced myocardial infarcted ratsAviwe Ntsethe, University of KwaZulu Natal, South Africa

Networking & Refreshment BreakTitle: Proteomic-based approaches for the characterization of peptides associated with Alzhemier’s diseaseLaura Ion, Alexandru Ioan Cuza University, RomaniaTitle: Stable silencing of IGF1R using lentiviral-mediated shRNA and evaluating sensitivity toimmunotherapy with monoclonal antibody rituximab in lymphoma cellsLeila Nasehi, Zanjan University of Medical Sciences, IranTitle: A Proteomic analysis on human sperm tail: comparison between normozoospermia and asthenozoospermiaSusan Sabbagh, Dezful University of Medical Sciences, Iran

Lunch Break Awards & Closing Ceremony

Day 2 Poster Presentations

PBC-01Title: ESRP1 has a prognostic value in biochemical recurrence and cancer specific survival of prostate cancerSung Han Kim, National Cancer Center, South Korea

PBC-02Title: Analysis of the leukocytes proteome in atherosclerosis related and non-related to chronic kidney disease

Joanna Tracz, Institute of Bioorganic Chemistry, Poland

PBC-03Title: Proteomics analysis of proteins associated with urinary tract infectionsAbdullah Essa Alsubhi, King Abdulaziz University, Saudi Arabia

PBC-04Title: The original SPR-based Hsp70 biosensor for rapid quantification and revelation of Hsp70 substrates in complex solutionOndrej Pastva, Institute of Hematology and Blood Transfusion, Czech Republic

PBC-05Title: Proteomics analysis of antitumoractivity of Helix and Rapana hemocyaninsRadostina Velikova, Bulgarian Academy of Sciences, Bulgaria

PBC-06Title: Structural analysis of tegumental allergen-like proteins from Schistosoma mansoniSulhee Kim, Korea University, South Korea

PBC-07Title: Analysis of differential expression of glycosyltransferase in mouse liverKyoungsook Park, Sungkyunkwan University, South Korea

PBC-08Title: Proteome analysis in breast cancer cells reveals differential expression of signatures involved in pre-mRNA alternative splicing events in response to 17b-estradiol and CRHSiti Sarah Hamzah, University of Warwick, UK

PBC-09Title: Rapid identification of contaminating bacteria protein profile present in ethanol fermentation process by matrix-assisted laser desorption/ionization (MALDI)Juliana Guimarães Fonseca, University of Sao Paulo, Brazil

PBC-10Title: Retrospective analysis of 25 immunohistochemical tissue markers for differentiating multilocular cystic renal neoplasm of low malignant potential and multicystic renal cell carcinomaSung Han Kim, National Cancer Center, South Korea

PBC-11Title: Impact of sequential passage on overall protein expression using proteomic analysisMohammed Sulaiman Al-Hajouj, King Abdulaziz University, Saudi Arabia

PBC-12Title: Seminal plasma proteins in castrated stallions: partial resultsPriscilla Nascimento Guasti, Sao Paulo State University, Brazil

PBC-13Title: A novel method for identification of hemoglobin variants by modified sample preparation followed by LC coupled with MALDI MS/MSPushpanjali Dasauni, University of Delhi, India

PBC-14Title: Clinical trials and evaluation of Cardiac ultrasonography over 4G wireless network using a tele-operated robotSotiris Avgousti, Cyprus University of Technology, Cyprus

PBC-15Title: Ser 81 of Natronomonas pharaonic halorhodopsin plays a role of holding chloride ions near the Schiff baseYuko Sakajiri, Iwate University, Japan

PBC-16Title: Development of duplicated-indel based biomarker for AML diagnosisSeo Hyein, Korean Advanced Institute of Science and Technology, South Korea

PBC-17Title: Genome analysis of Sphingopyxis flava R11HT: An overview of genetic attributesGauri Garg Dhingra, University of Delhi, India

PBC-18

Title: Potential role of celecoxib and omega-3 fatty acids as adjuvant therapy with risperidone in experimentally-induced schizophrenia: Possible effects on Lysosomal membrane integrity and neuroinflammationEnass Y Osman, Tanta University, Egypt

PBC-19Title: Hippocampal neural proteins interaction of Alzheimer’s peptide: 14-3-3 zeta as potential therapeutic biomarkerPratibha Sharma, All India Institute of Medical Sciences, India

PBC-20Title: Modulation of melanoma cell proliferation and spreading by novel small molecular weight bioactive compoundQurat-ul-Ain, Dr. Panjwani Center for Molecular Medicine and Drug Research - ICCBS, Pakistan

PBC-21Title: A proteomic analysis of human follicular fluid: novel candidate markers for oocyte number and reproductive agingMaryam Bahmanzadeh, Hamadan University of Medical Sciences, Iran

PBC-22Title: First report of Colistin Resistance (MCR-1) Gene in Escherichia coli and Klebsiella pneumoniae Isolated from Clinical Specimens in Khartoum, SudanNahed Adam, Sudan University of Science and Technology, Sudan

October 24-26, 2016 Rome, Italy


Proteomics & BioinformaticsScientific Program


08:00-08:30 RegistrationsOlimpica

Day 1 October 24, 2016

Group Photo

Networking and Refreshment Break

Sessions:

Protein Expression and Analysis | Cancer and Clinical Proteomics | Proteomics for Bioinformatics

Session Chair: Wendy Sandoval, Genentech, Inc., USASession Co-chair: Nekane Guarrotxena, Spanish National Research Council, Spain


Title: Quantification of non-cognate pairs resulting from single cell bispecific antibody assembly using high resolution intact mass measurementWendy Sandoval, Genentech, Inc., USATitle: Moonlighting microtubule-associated proteins: Regulatory functions by day and pathological functions at nightJudit Ovádi, Hungarian Academy of Sciences, HungaryTitle: Temporal and spatial T-patterns in behavior and DNA: Is the structure of DNA reflected in the structure of neuronal and human behavior?Magnus S Magnusson, University of Iceland, IcelandTitle: The antioxidant protein PARK7 plays an important role in cell resistance to cisplatin induced apoptosis in case of clear cell renal cell carcinomaMarwa Eltoweissy, University of Göttingen, GermanyTitle: Solution structure of CUBO, a novel domain that preferentially binds the ubiquitin-like protein NEDD8Elena Santonico, University of Rome Tor Vergata, ItalyTitle: Sensitive, selective and accurate response of plasmonic bead platforms in high-throughput biomarker screeningNekane Guarrotxena, Spanish National Research Council, Spain

Lunch Break

Title: Next generation protein sequencing (NGPS) enables rapid full-length de-novo antibody and other protein sequence determinationAlon Savidor, Weizmann Institute of Science, IsraelTitle: Allosteric modulation: The Hsp70 case studyFederica Chiappori, Istituto di Tecnologie Biomediche-Consiglio Nazionale delle Recerche, ItalyTitle: Proteomics analysis of rat serum seeking for new transporters across blood-brain barrierEunjoo Kim, Daegu Gyeongbuk Institute of Science and Technology, South Korea

Opening Ceremonyconferenceseries.com

Keynote ForumIntroduction

Title: Solvent interaction analysis: A new approach to structure-focused clinical proteomicsBoris Zaslavsky, Cleveland Diagnostics, USATitle: Glycomics work-flows for the characterization of vaccine glycoprotein antigensJohn F Cipollo, Center for Biologics Evaluation and Research-USFDA, USATitle: Systematic analysis of liver cancer metabolism - Lessons from mice and humansStefan Kempa, Berlin Institute for Medical Systems Biology - MDC Berlin, GermanyTitle: Quantitative measurement of cellular events with image processing and data mining for drug discovery, therapy and system biologyPetra Perner, Institute of Computer Vision and Applied Computer Sciences, Germany

Workshop

Detection of recurrent self-similar structured clusters in human and neuronal interactions, DNA and proteins: T-Pattern Analysis (TPA) with Theme™Magnus S Magnusson, University of Iceland, Iceland

Sessions:

Evolutionary & Structural Bioinformatics | Emerging Trends in Proteomics & Genomics | Frontiers of Systems Biology in Bioinformatics

Session Chair: Alexandru G Floares, SAIA-Solutions of Artificial Intelligence Applications, RomaniaSession Co-chair: Elena Papaleo, Danish Cancer Society Research Center, Denmark


Title: Of men and not mice: Comparative genomic analysis of human diseases and mouse modelsWenzhong Xiao, Stanford University School of Medicine, USA


Title: The impact of functional redundancy on molecular signaturesAlexandru G Floares, SAIA-Solutions of Artificial Intelligence Applications, RomaniaTitle: The mast cell has much in store for us: A call to bioinformaticians to advance insights into a unique, intriguing but underexplored cell subset of the human bodyMagda Babina, Charité University Medicine Berlin, GermanyTitle: Structural communication in transcription factorsElena Papaleo, Danish Cancer Society Research Center, DenmarkTitle: GNM 2.0 - A database housing protein dynamics data of >11,000 PDB structures revealing dynamics prerequisites for protein functions and interactionsLee Wei Yang, National Tsing Hua University, TaiwanTitle: Mathematical modelling of evolution of tetranucleotide usage patterns of whole bacterial genomes to improve phylogenetic inferencesXiaoyu Yu, University of Pretoria, South AfricaTitle: GAUDIMM: Widening the application of genetic algorithms for molecular modelingJean-Didier Maréchal, Universitat Autònoma de Barcelona, Spain

Panel Discussions


Olimpica

Keynote ForumIntroduction

Title: Multi-level self-similarity from cells to insect and human societies: Socio-proteomics as a possible source of ideas and guidance for a general bio-social science?Magnus S Magnusson, University of Iceland, IcelandTitle: Fragments, fragmentome and fragmentomics in proteomicsAlexander A Zamyatnin, A.N. Bach Institute of Biochemistry, Russia; Universidad Técnica Federico Santa Maria, Chile

Sessions:

Cancer and Clinical Proteomics | Mass Spectrometry in Proteome Research | Proteomics from Discovery to Function | Plant Proteomics

Session Chair: Bart Devreese, Ghent University, BelgiumSession Co-Chair: Pavel Vítámvás, Crop Research Institute, Czech Republic


Title: Effects of natural compounds and proteins on solvent properties of aqueous mediaBoris Zaslavsky, Cleveland Diagnostics, USATitle: Laser microdissection in proteomic analysis Mauro Baron, Leica Microsystems, ItalyTitle: Fecal (meta) proteomics: A tool to investigate dysbiosis and inflammation in patients with cystic fibrosisBart Devreese, Ghent University, Belgium


Title: Quantitative proteomic analysis of prostate cancer for biomarker discovery and drug target identificationAmilcar Flores Morales, University of Copenhagen, DenmarkTitle: Quantitative proteomics and pharmacokinetic modeling in the optimisation of drug dosingJill Barber, University of Manchester, UKTitle: Analysis of cereal response to abiotic stress using gel-based proteomicsPavel Vítámvás, Crop Research Institute, Czech RepublicTitle: Potential use of reciprocal levels of serum and urinary peptides for discriminating prostate cancer from benign prostatic hyperplasiaJaime Jacqueline Jayapalan, University of Malaya, Malaysia

Poster Presentations

Lunch Break

Workshop

Disease specific databases for personalized medicine: Fabry disease as a case of studyMaria Vittoria Cubellis, University of Naples, Italy

Sessions:

Immunology and Drug Discovery | Bioinformatics Algorithms & Databases | Clinical Informatics & Biostatistics

Session Chair: Nabil Mili, University of Geneva, SwitzerlandSession Co-Chair: Tamas Hegedus, Semmelweis University, Hungary


Title: Translating genomic biomarker findings into clinical medicine: Dimension of the problem, network structure of competing models, and estimate of the misclassification prediction errorNabil Mili, University of Geneva, SwitzerlandTitle: PhyQuart-A new algorithm to avoid systematic bias & phylogenetic incongruence: Are directed quartets the key for more reliable supertrees?Patrick Kück, The Natural History Museum London, UKTitle: VHL-Hunter: A predictor of the impact of missense mutations in the function of the Von Hippel-Lindau protein (pVHL), risk of clear cell renal carcinoma and severity of pVHL-associated diseasesAlvaro Olivera-Nappa, University of Chile, ChileTitle: Big data in noncoding RNA and precision medicineRunsheng Chen, Institute of Biophysics, Chinese Academy of Sciences, China


Title: In silico modeling of ABCG2/BCRP structure and dynamics sheds light on xenobiotic recognition and transport functionTamas Hegedus, Semmelweis University, HungaryTitle: Probability sampling in matched case-control study in drug abuseSurya Raj Niraula, B P Koirala Institute of Health Sciences, NepalTitle: Structural implications of protease mutations in antiretroviral treatment exposed patients infected with HIV-1 subtype CVeronna Marie, University of KwaZulu-Natal, South AfricaTitle: Designer protein enriched with large neutral amino acids: A new approach for treating phenylketonuriaPrakruthi Appaiah, CSIR-Central Food Technology Research Institute, IndiaTitle: Remote patient triage and prioritization in mobile telemedicine servicesOmar Hussein Salman, Al Iraqia University, Iraq

Panel Discussions


OlimpicaSpecial Session

Glycomics characterization of influenza hemagglutinin glycoprotein antigensJohn F Cipollo, Center for Biologics Evaluation and Research-USFDA, USA

Sessions:

Proteomics in Protein Biochemistry and Personalized Medicine | Neuroproteomics & Neurometabolomics | Proteomics Case Study and Integrating Transcriptomics | Cancer and Clinical Proteomics

Session Chair: Serhiy Souchelnytskyi, Qatar University, QatarSession Co-Chair: Veronica Anania, Genentech, Inc., USA


Title: Systemic properties of proteome profiles of carcinogenesis of human breast epithelial cells, and clinical applications of these profilesSerhiy Souchelnytskyi, Qatar University, QatarTitle: Unraveling of gene expression control in genome-reduced bacteriaVadim Govorun, Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Russia


Title: Quantitative proteomic approaches for identifying urinary biomarkers in Lupus nephritis Veronica Anania, Genentech, Inc., USATitle: Protein profile of seminal plasma and functionality of spermatozoa during the reproductive season in common carp Cyprinus carpio and rainbow trout Oncorhynchus mykissAnna Shaliutina-Kolesova, University of South Bohemia České Budějovice, Czech RepublicTitle: Effect of therapeutic concentration of lithium on living HEK293 cells; alteration of overall protein compositionMiroslava Vosahlikova, Institute of Physiology of the Czech Academy of Sciences, Czech RepublicTitle: Comparative proteomic analysis of fibrosarcoma and skin fibroblast cell linesHamdi Uysal, Ankara University, Turkey

Lunch Break 12:35-13:35 @ Hotel Restaurants

Title: PRMT1 modulates gene expression during DNA damage response, through R-methylation of histones and non-histone targetsDaniele Musiani, European Institute of Oncology, ItalyTitle: Proteomic analysis of protein composition of rat forebrain cortex exposed to morphine for 10 days: Comparison with animals exposed to morphine and subsequently nurtured for 20 days in the absence of this drugHana Ujcikova, Institute of Physiology-Czech Academy of Sciences, Czech RepublicTitle: Analysis of screening and bioinformatics of antithrombotic peptides in casein molecules from bovine milkMaolin Tu, Harbin Institute of Technology, ChinaTitle: Proteomic characterization of apoptosis process in Entamoeba histolytica: Identification ofpro- and antiapoptotic proteinsGuillermo Pérez Ishiwara, Instituto Politécnico Nacional, México

Awards & Closing Cermony

Day 2 Poster Presentations

PBP-01Title: Quantification of drug-metabolising enzymes in human liver microsomes: A comparison between label-free profiling and targeted quantitative analysis

Zubida Al-majdoub, University of Manchester, UK

PBP-02Title: Mass spectrometry in forensic identification of two main potential agents of bioterrorism and warfare: Botulinum toxins and ricin

Valerie Morineaux, Direction générale de l'Armement, France

PBP-03Title: Nitric oxide synthases and acute sleep deprivation

Zdenka Kristofikova, National Institute of Mental Health, Czech Republic

PBP-04Title: Expression and purification of membrane scaffold proteins for the design of discoidal phospholipid bilayer nanoparticles

Ramona Bosch, University of Hohenheim, Germany

PBP-05Title: Proteomic analysis of endothelial to mesenchymal transition controlled by snail

Marta Stasiak, Medical University of Lodz, Poland

PBP-06Title: An analysis of norovirus genome using next-generation sequencing

Jeong-Su Lee, National Institute of Food and Drug Safety Evaluation, Republic of Korea

PBP-07Title: Identification and characterization of proteoglycans in early stages of fibrosis

Katarzyna Gawrys, Medical University of Lodz, Poland

PBP-08Title: Quantitative analysis of prostate specific antigen isoforms using immunoprecipitation and stable isotope labeling mass spectrometry

Sung-Fang Chen, National Taiwan Normal University, Taiwan

PBP-09Title: Molecular studies of scorpion toxins interactions with calcium-activated potassium channels

Alena Dmitrievna Volyntceva, Lomonosov Moscow State University, Russia

PBP-10Title: Development of RNA standardized controls for quantitative detection of rotavirus and astrovirus by realtime RT-PCR

Kyu-Heon Kim, Ministry of Food & Drug Safety, Republic of Korea

PBP-11Title: Comparative NanoUPLC-MSE analysis between magainin I-susceptible and -resistant Escherichia coli strains

Marlon Henrique e Silva Cardoso, Universidade de Brasília, Brazil

PBP-12Title: Application of N-terminal fusion protein partners for prokaryotic soluble expression of human VEGF165 and its simple purification with maltose binding protein tag

Minh Tan Nguyen, University of Ulsan, South Korea

PBP-13Title: Role of fibrosin in the endothelial to mesenchymal transition

Marcin Popielarski, Medical University of Lodz, Poland

PBP-14Title: Using entrapment sequences strategy for evaluation of database search engines and quality control methods in shotgun proteomics

Jie Ma, Beijing Proteome Research Center, China

PBP-15Title: Proteomic approach to determine the biological variation of oil palm fruit mesocarp

Benjamin Lau, Malaysian Palm Oil Board, Malaysia

PBP-16Title: Neonatal immune challenges affect behaviour, cytokine profiles and brain morphology parameters in adult rats

Hana Tejkalová, National Institute of Mental Health, Czech Republic

PBP-17Title: A wiki-based web server for human disease

Tao Chen, National Center for Protein Sciences, China

PBP-18Title: Profiling of osteosarcoma serum leads to identification of proteins involved in modulation of α4β1 integrin expression in osteosarcoma cells migration

Fadzliza Hafiza Ramli, Universiti Teknologi MARA, Malaysia

PBP-19Title: A proteomic road to acquire an accurate serological diagnosis for human tegumentary leishmaniasis

Hélida Monteiro de Andrade, Simone Pires, Federal University of Minas Gerais, Brazil

PBP-20Title: Proteome reorganization of the bacterium upon invasion of a host cell as a mechanism of adaptation: A Mycoplasma gallisepticum model

Matyushkina Daria, Federal Research and Clinical Centre, Russia

PBP-21Title: Evaluation of disulfide scrambling at various pH on Avastin digestion by mass spectrometry

Yi-Li Huang, National Taiwan Normal University, Taiwan

PBP-22Title: Apoptotic induction in Entamoeba histolytica: Differential proteomic analysis deals with the identification of pro and antiapoptotic proteins

Gómez-García Consuelo, Escuela Nacional de Medicina y Homeopatía, Mexico

PBP-23Title: Quantitative analysis of medulloblastoma using tandem mass spectrometry

Marta Nekulova, Masaryk Memorial Cancer Institute, Czech Republic

PBP-24

Title: Transforming growth factor-beta1- and insulin-dependent regulation of carcinogenic transformation is in line with proteome profiling and identification of TGFbeta and insulin as keynodes of carcinogenic transformation of MCF7 cells

Fatima Saoud Al-Mouhannadi, Reem Saeed Mubarak, Qatar University, Qatar

PBP-25Title: Whole transcriptome analysis reveals that Zika virus halts cell cycle progression and disrupts neuronal differentiation in human neurospheres

João Lídio da Silva Gonçalves Vianez Júnior, Evandro Chagas Institute, Brazil

Bookmark your dates

e-mail: [email protected]; [email protected] Website: www.proteomicsconference.com

UK: Conference Series llc LTD47 Churchfield Road, London, W3 6AY

Toll Free: [email protected]

Conference Series6th Floor, North Block, Divyasree Building, Raidurg

Hyderabad, Telangana, INDIA-500032Tel: +91-40-33432300

[email protected]

Toll freeAustralia: +1-800-651-097Europe: +1-800-014-8923

October 23-25, 2017 Paris, France


Proteomics & Bioinformatics

Proteomics & BioinformaticsSeptember 01-03, 2015 Valencia, Spain

Scientific Program


Toll Free: +1-800-014-8923Email: [email protected]; [email protected]


Registrations

Melia Meeting 4-5

Day 1 September 01, 2015

Networking & Refreshments BreakTrack 1: Proteomics from Discovery to Function Track 2: Mass Spectrometry in Proteome ResearchTrack 3: ProteomeSession Chair: Patricia Sampaio Tavares Veras, Fundacao Oswaldo Cruz (FIOCRUZ), BrazilSession Co-Chair: Sara Motta, National Research Council, Italy

Session IntroductionTitle: Neuroproteomic profiling reveals anoctamin 2 as an autoimmune target in multiple sclerosisPeter Nilsson, KTH-Royal Institute of Technology, SwedenTitle: Improved SERS nanodumbbells design for femtomolar-sensitive screening disease-associated biomarkersNekane Guarrotxena, CSIC-Institute of Polymer Science and Technology, SpainTitle: Mass spectrometry-based approach coupled to computational tools for proteomics investigation of bacterial membraneSara Motta, National Research Council, ItalyTitle: Proteomics analysis of infected murine macrophages reveals modulation of proteins potentially involved in Leishmania intracellular survivalPatrícia Sampaio Tavares Veras, Gonçalo Moniz Research Center- FIOCRUZ, BrazilTitle: Commercialization of a plasma amino acid based risk diagnosis serviceTakeshi Kimura, Ajinomoto Co., Inc., JapanTitle: DNA-Affinity purification followed by mass spectrometry (AP-MS): Application to the analysis of transcriptional regulators interacting with a defined DNA sequencePatricia Renard, University of Namur, BelgiumTitle: Integrating bioinformatic analyses and omics approaches for cloning and recombinant production of major allergens from Polybia paulista venomAmilcar Perez-Riverol, Sao Paulo State University, Brazil

Group PhotoLunch Break

Session Chair: Nekane Guarrotxena, CSIC-Institute of Polymer Science and Technology, SpainSession Co-Chair: Mohamad Khairi Zainol, Universiti Malaysia Terengganu, MalaysiaTitle: High disease burden in human synaptic protein complexes identified by proteomics and bioinformaticsAlex Bayes, Biomedical Research Institute Sant Pau, SpainTitle: A mass spectrometry driven proteomics approach identifies new protein families involved in regenerationMario Looso, Max Planck Institute for Heart and Lung Research, GermanyTitle: Deciphering the binding characteristics of DppA-dipeptide interaction by site directed mutagenesisMohamad Khairi Zainol, Universiti Malaysia Terengganu, MalaysiaTitle: Exploring neighborhoods of ubiquitinated proteins with proximity-utilizing biotinylationArman Kulyyassov, National Center for Biotechnology, Kazakhstan

Young Researchers Forum

Opening CeremonyKeynote Forum

IntroductionPeter NilssonKTH-Royal Institute of Technology, SwedenIda Pucci MinafraUniversity of Palermo, Italy


Title: Circulating proteins revealed to be associated to knee radiographic OALucia Lourido Salas, Instituto de Investigacion Biomedica de A Coruna, SpainTitle: Proteomic characterization of Vancomycin-resistant Enterococci clinical strainsLuis Pinto, University of Tras-os-Montes and Alto Douro, Portugal

Networking & Refreshments BreakTitle: Producing recombinant poly-γ-glutamic acid as ‘mortar’ of biomimetic nacreNadine Bongaerts, Delft University of Technology, The NetherlandsTitle: In silico screening of anti-malarial from Indonesian medicinal plants database to plasmepsin targetEko Aditya Rifai, Universitas Indonesia, IndonesiaTitle: A novel prediction model for different post-translational modifications: GEARS (genetic evolution of classifier by learning residues rules of sequences)Zeeshan Iqbal, Institute of Molecular Sciences and Bioinformatics, PakistanTitle: Anti-bacterial activity of a mixture of garlic extracts (Allium sativum) and skimmed milk in clinical isolatesDalha Wada Taura, Bayero University, Nigeria

Video PresentationTitle: Meta-analysis of RAG2 using a genotranscriptomic/proteomic approach: Suggestive of its oncogenic roleAbbas Salavaty, Shahid Chamran University of Ahvaz, Iran

Panel Discussion

Day 2 September 02, 2015Melia Meeting 4-5

Keynote ForumMagnus S MagnussonUniversity of Iceland, IcelandLaszlo TakacsBiosystems International, Hungary

Track 5: Analytical Genomics and ProteomicsTrack 6: Molecular Modeling and Drug DesignTrack 7: Systems Biology Applications in ProteomicsTrack 12: Proteomics Clinical ApplicationsSession Chair: Ida Pucci Minafra, University of Palermo, ItalySession Co-Chair: Magnus S Magnusson, University of Iceland, Iceland

Session IntroductionTitle: Navigating the 3D biological space – The bioGPS approachLydia Siragusa, Molecular Discovery Limited, UKTitle: Alterations of the proteome and transcriptome in induced sputum samples from smokers and early-stage COPD subjectsThomas Schneider, Philip Morris International, Switzerland

Networking & Refreshments BreakTitle: The T-pattern and structural and functional self-similarity from human and neuronal interactions to DNAMagnus S Magnusson, University of Iceland, IcelandTitle: Heterologous expression of β-ketoacyl ACP synthase 1 of Salmonella Typhi in Escherichia coliHasni Arsad, Universiti Sains Malaysia, MalaysiaTitle: Understanding protein structure and domains from a network perspective: Functional and evolutionary implicationsArnold Emerson Isaac, Vellore Institute of Technology University, IndiaTitle: Phosphoproteomic screening for biomarkers and novel targets finding in early breast cancerMiguel Quintela-Fandino, Spanish National Cancer Research Center, SpainTrack 10: Recent Advancements in ProteomicsSession Chair: Laszlo Takacs, Biosystems International, HungarySession Co-Chair: Jozsef Lazar, Biosystems International Kft, Hungary

Session IntroductionTitle: ELISA-analog plasmonic nanostructures for ultrasensitive biomarkers identification Nekane Guarrotxena, CSIC-Institute of Polymer Science and Technology, SpainTitle: Discovery and translation of epitomics biomarkers: Towards diagnosticsJozsef Lazar, Biosystems International Kft, Hungary

Lunch Break

Title: Proteomic analysis of carbapenem resistant Klebsiella pneumoniae strain in response to meropenem stress: Understanding cellular responses for survivalAsad U Khan, Aligarh Muslim University, IndiaTitle: Current applications of mass spectrometry in clinical microbiologyRaju Ravikumar, National Institute of Mental Health and Neuro Sciences, IndiaTitle: Stereoelectronic effect in amino acids and its influence on modification potential of proteins: In silico approachNasir Uddin, Institute of Molecular Sciences and Bioinformatics, Pakistan

Poster Presentations Networking & Refreshments Break

WorkshopTitle: Proteomics in biotherapeutic development: Therapeutic characterization, pharmacokinetic studies, pharmacodynamics and support to process developmentAndreu Soldevila, Leanbio SL, SpainTitle: Analytical characterization for novel biological entities and biosimilarsAlastair Waugh, 3P Biopharmaceuticals, SpainTitle: Mass spectrometry approach for characterization of biotherapeutics from a CRO point of viewCarles Celma Lezcano, Kymos Pharma Services, Spain

Panel Discussion

Day 3 September 03, 2015Melia Meeting 4-5

Track 10: Recent Advancements in ProteomicsSession Chair: Tiziana Bonaldi, European Institute of Oncology, ItalySession Co-Chair: Nekane Guarrotxena, CSIC-Institute of Polymer Science and Technology, Spain

Session IntroductionTitle: Quantitative proteomics for epigenetics: MS-based analysis of the histone post-translational modifications for basic and clinical researchTiziana Bonaldi, European Institute of Oncology, ItalyTitle: Markers found in macrophages using proteomics can function as targets for chemotherapeutic intervention of Leishmania infectionPatrícia Sampaio Tavares Veras, Gonçalo Moniz Research Center- FIOCRUZ, Brazil

Networking & Refreshments BreakTitle: Study of the phosphoproteome of the pathogenic yeast Cryptococcus neoformans var grubiiRaju Ravikumar, National Institute of Mental Health and Neuro Sciences, IndiaTitle: Network properties of protein domain co-occurrence networkArnold Emerson Isaac, Vellore Institute of Technology University, IndiaTitle: Comparative proteomic analysis of food related lactobacilli: New evidencesMaria De Angelis, University of Bari Aldo Moro, Italy Title: Seminal plasma proteomics of Dorper rams from northeastern BrazilCarlos Eduardo A Souza, Cisne University, Brazil

Lunch Break Panel Discussion

Poster Presentations

P01Title: Improved intact protein quantitation on an orbitrap fusion tribrid mass spectrometer using multiplexed SIM and PRM techniquesSteven Danielson, Thermo Fisher Scientific, USA

P02Title: Secretome proteomic analysis of renal cells treated with the profibrotic agents ANG II, TGFß1 and PDGF: A comparative studyMarwa Eltoweissy, University Medicine of Gottingen, Germany

P03 Title: Quantitative proteomics of tear fluid using multiplex peptide stable isotope dimethyl labelingCecilie Aass, Oslo University Hospital, Norway

P04 Title: Comprehensive proteomic approach for understanding xylem vessel cell differentiationMasahiro Noguchi, Nara Institute of Science and Technology, Japan

P05Title: Application of proximity utilizing biotinylation method for identification of post-translational modification and ubiquitination in UV-induced DNA repairArman Kulyyassov, National Center for Biotechnology, Kazakhstan

P06 Title: Identification and characterization of tissue-specific kinome profilesBrenden Van Wyk, University of Saskatchewan, Canada

P07 Title: Palladin, a novel end MT biomarker?Kataryna Gawrys, Medical University of Lodz, Poland

P08Title: In silico analysis of non-synonymous single nucleotide polymorphisms of BMBR2 (PPH1) gene and demonstration of gene’s network interactionsMohamed Taha, University of Khartoum, Sudan

P09 Title: Study of the compartmentalization of cell using proximity utilizing enzymatic ligationArman Kulyyassov, National Center for Biotechnology, Kazakhstan

P10 Title: In silico analysis of single nucleotide polymorphism in FBN1 gene and study of genetic interactionMohanad Khalid Ali Abdelrahim, University of Khartoum, Sudan

P11 Title: Seminal plasma and sperm membrane protein profile of Quarter Horse stallionsPriscilla Nascimento Guasti, Sao Paulo State University, Brazil

P12Title: Single nucleotide polymorphisms (SNPs) in human abetalipoprotein epsilon 4 (APOE e4) gene as a cause of Alzheimer’s disease: In silico analysisAbdelmohaymin A A Abdalla, University of Khartoum, Sudan

P13 Title: Comparison of protein extraction buffers of bovine spermCaroline Scott, Sao Paulo State University, Brazil

P14 Title: Genetic basis of steroid resistance in nephrotic syndrome NPHS2: A computational studyKhalid El. Khalid, University of Khartoum, Sudan

Bookmark your dates

ProteomicsMarch 29-30, 2016 Atlanta, USA

Website: proteomicsconference.com/americae-mail: [email protected]; [email protected]


ProteomicsOctober 10-12, 2016 Rome, Italy

Website: www.proteomicsconference.come-mail: [email protected]; [email protected]



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