Supporting Information forskkim.skku.edu/abstract/supporting-paper67.pdf · 2019-06-19 · S1...
Transcript of Supporting Information forskkim.skku.edu/abstract/supporting-paper67.pdf · 2019-06-19 · S1...
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Supporting Information for
“Two-Dimensional Icy Water Clusters Between a
Pair of Graphene-Like Molecules or Graphene
Sheets”
Seong Kyu Kim,1,*
Wenzhou Chen,2
Saeed Pourasad,2
and Kwang S. Kim2,*
1Department of Chemistry, Sungkyunkwan University, Suwon 16419, Korea
2Center for Superfunctional Materials, Department of Chemistry, Ulsan
Institute of Science and Technology (UNIST), Ulsan 44919, Korea
*Corresponding authors: [email protected], [email protected]
Contents:
1. Geometry and Energy of (H2O)1-2 as the inter-layer separation of
coronene pair is varied.
2. Geometry and Energy of (H2O)3-5 as the inter-layer separation of
coronene pair is varied.
3. Geometry and Energy of (H2O)6 as the inter-layer separation of
coronene pair is varied.
4. Many body Interaction of (H2O)2-4 clusters extracted from substrates
of this study
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1. Geometry and Energy of (H2O)1-2 as the inter-layer separation of
coronene pair is varied.
1-1. Cor/(H2O)1/Cor
1-2. Cor/(H2O)2/Cor (Starting from dHdd conformer)
1-3. Cor/(H2O)2/Cor (Starting from uHdd conformer)
Calculation method: SCC-DFTB-3D
Interaction energy of water clusters is defined as;
E1 = Etotal - 2Esub- nEwater
E2 = E1 – Esub-sub
where Etotal, Esub, Ewater, Esub-sub are the total energy of cluster, energy of a single
water, energy of the substrate, and energy of the substrate pair, respectively
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1-1. Cor/(H2O)/Cor
Figure S1. Interaction energy as a function of the Cor-Cor distance (dz)
for (H2O)1 between a pair of sandwiched Cors (left) and geometry at
(dx,dy,dz) = (0,0,15) Å (right).
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Figure S2. Interaction energy as a function of the Cor-Cor distance (dz)
for (H2O)1 between a pair of sandwiched Cors (left) and geometry at
(dx,dy,dz) = (0,0,5.9) Å (right).
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Figure S3. Interaction energy as a function of the Cor-Cor distance (dz)
for (H2O)1 between a pair of sandwiched Cors (left) and geometry at
(dx,dy,dz) = (0,0,5.0) Å (right).
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1-2. Cor/(H2O)2/Cor (Starting from dHdd conformer)
Figure S4. Interaction energy as a function of the Cor-Cor distance (dz)
for (H2O)2 (starting from dHdd conformer) between a pair of sandwiched
Cors (left) and geometry at (dx,dy,dz) = (0,0,15) Å (right).
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Figure S5. Interaction energy as a function of the Cor-Cor distance (dz)
for (H2O)2 (starting from dHdd conformer) between a pair of sandwiched
Cors (left) and geometry at (dx,dy,dz) = (0,0,7.5) Å (right).
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Figure S6. Interaction energy as a function of the Cor-Cor distance (dz)
for (H2O)2 (starting from dHdd conformer) between a pair of sandwiched
Cors (left) and geometry at (dx,dy,dz) = (0,0,6.2) Å (right).
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Figure S7. Interaction energy as a function of the Cor-Cor distance (dz)
for (H2O)2 (starting from dHdd conformer) between a pair of sandwiched
Cors (left) and geometry at (dx,dy,dz) = (0,0,5.6) Å (right).
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1-3. Cor/(H2O)2/Cor (Starting from uHdd conformer)
Figure S8. Interaction energy as a function of the Cor-Cor distance (dz)
for (H2O)2 (starting from uHdd conformer) between a pair of sandwiched
Cors (left) and geometry at (dx,dy,dz) = (0,0,15) Å (right).
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Figure S9. Interaction energy as a function of the Cor-Cor distance (dz)
for (H2O)2 (starting from uHdd conformer) between a pair of sandwiched
Cors (left) and geometry at (dx,dy,dz) = (0,0,8.0) Å (right).
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Figure S10. Interaction energy as a function of the Cor-Cor distance (dz)
for (H2O)2 (starting from uHdd conformer) between a pair of sandwiched
Cors (left) and geometry at (dx,dy,dz) = (0,0,6.3) Å (right).
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Figure S11. Interaction energy as a function of the Cor-Cor distance (dz)
for (H2O)2 (starting from uHdd conformer) between a pair of sandwiched
Cors (left) and geometry at (dx,dy,dz) = (0,0,5.6) Å (right).
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Figure S12. Geometry change of (H2O)2 as one Cor plane is laterally
displaced from the other.
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2. Geometry and Energy of (H2O)3-5 as the inter-layer separation of
coronene pair is varied.
2-1. Cor/(H2O)3/Cor
2-2. Cor/(H2O)4/Cor (Starting from dHdd conformer)
2-3. Cor/(H2O)5/Cor (Starting from uHdd conformer)
Calculation method: SCC-DFTB-3D
In order to assess the ring structure, the following parameters are calculated.
n
1
On
1
i
izz : Mean distance of oxygen atoms (zOi) of water cluster ring from
the bottom substrate.
n
1
2
On
1
i
iz zz : Deviation of zOi from the mean value <z>. This
parameter indicates the flatness of the water cluster ring.
n
1
2
O
2
On
1FF
i
iiii YyXx : Geometry fit factor, where (xOi,yOi) is the
coordinate of i-th oxygen in the water cluster ring and (Xi,Yi) is
that in an ideal ring geometry, i.e. equilateral triangle for n =3,
square for n = 4, regular pentagon for n = 5, regular hexagon for
n =6.
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2-1. Cor/(H2O)3/Cor
Figure S13. Interaction energy (E1) and geometry parameters (<z>, z,
FF) as a function of the Cor-Cor distance (dz) for (H2O)3 between a pair
of sandwiched Cors (left) and the geometry at (dx,dy,dz) = (0,0,15) Å
(right).
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Figure S14. Interaction energy (E1) and geometry parameters (<z>, z,
FF) as a function of the Cor-Cor distance (dz) for (H2O)3 between a pair
of sandwiched Cors (left) and the geometry at (dx,dy,dz) = (0,0,8.0) Å
(right).
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Figure S15. Interaction energy (E1) and geometry parameters (<z>, z,
FF) as a function of the Cor-Cor distance (dz) for (H2O)3 between a pair
of sandwiched Cors (left) and the geometry at (dx,dy,dz) = (0,0,6.3) Å
(right).
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Figure S16. Interaction energy (E1) and geometry parameters (<z>, z,
FF) as a function of the Cor-Cor distance (dz) for (H2O)3 between a pair
of sandwiched Cors (left) and the geometry at (dx,dy,dz) = (0,0,6.1) Å
(right).
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Figure S17. Geometry change of (H2O)3 as one Cor plane is laterally
displaced from the other.
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2-2. Cor/(H2O)4/Cor
Figure S18. Interaction energy (E1) and geometry parameters (<z>, z,
FF) as a function of the Cor-Cor distance (dz) for (H2O)4 between a pair
of sandwiched Cors (left) and the geometry at (dx,dy,dz) = (0,0,15) Å
(right).
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Figure S19. Interaction energy (E1) and geometry parameters (<z>, z,
FF) as a function of the Cor-Cor distance (dz) for (H2O)4 between a pair
of sandwiched Cors (left) and the geometry at (dx,dy,dz) = (0,0,8.5) Å
(right).
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Figure S20. Interaction energy (E1) and geometry parameters (<z>, z,
FF) as a function of the Cor-Cor distance (dz) for (H2O)4 between a pair
of sandwiched Cors (left) and the geometry at (dx,dy,dz) = (0,0,7.0) Å
(right).
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Figure S21. Interaction energy (E1) and geometry parameters (<z>, z,
FF) as a function of the Cor-Cor distance (dz) for (H2O)4 between a pair
of sandwiched Cors (left) and the geometry at (dx,dy,dz) = (0,0,6.2) Å
(right).
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Figure S22. Geometry change of (H2O)4 as one Cor plane is laterally
displaced from the other.
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2-3. Cor/(H2O)5/Cor
Figure S23. Interaction energy (E1) and geometry parameters (<z>, z,
FF) as a function of the Cor-Cor distance (dz) for (H2O)5 between a pair
of sandwiched Cors (left) and the geometry at (dx,dy,dz) = (0,0,15) Å
(right).
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Figure S24. Interaction energy (E1) and geometry parameters (<z>, z,
FF) as a function of the Cor-Cor distance (dz) for (H2O)5 between a pair
of sandwiched Cors (left) and the geometry at (dx,dy,dz) = (0,0,8.0) Å
(right).
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Figure S25. Interaction energy (E1) and geometry parameters (<z>, z,
FF) as a function of the Cor-Cor distance (dz) for (H2O)5 between a pair
of sandwiched Cors (left) and the geometry at (dx,dy,dz) = (0,0,6.3) Å
(right).
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Figure S26. Geometry change of (H2O)5 as one Cor plane is laterally
displaced from the other.
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3. Geometry and Energy of (H2O)6 as the inter-layer separation of
coronene pair is varied.
3-1. Cor/(H2O)6 (ring)/Cor
3-2. Cor/(H2O)6 (book)/Cor
3-3. Cor/(H2O)6 (bag)/Cor
3-4. Cor/(H2O)6 (cage)/Cor
3-5. Cor/(H2O)6 (prism)/Cor
Calculation method: SCC-DFTB-3D
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3-1. Cor/(H2O)6 (ring)/Cor
Figure S27. Interaction energy (E1) and geometry parameters (<z>, z,
FF) as a function of the Cor-Cor distance (dz) for (H2O)6 (ring) between a
pair of sandwiched Cors (left) and the geometry at (dx,dy,dz) = (0,0,15) Å
(right).
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Figure S28. Interaction energy (E1) and geometry parameters (<z>, z,
FF) as a function of the Cor-Cor distance (dz) for (H2O)6 (ring) between a
pair of sandwiched Cors (left) and the geometry at (dx,dy,dz) = (0,0,8.0) Å
(right).
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Figure S29. Interaction energy (E1) and geometry parameters (<z>, z,
FF) as a function of the Cor-Cor distance (dz) for (H2O)6 (ring) between a
pair of sandwiched Cors (left) and the geometry at (dx,dy,dz) = (0,0,6.5) Å
(right).
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3-2. Cor/(H2O)6 (book)/Cor
Figure S30. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (book) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,15) Å (right).
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Figure S31. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (book) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,8.0) Å (right).
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Figure S32. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (book) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,6.5) Å (right).
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3-3. Cor/(H2O)6 (bag)/Cor
Figure S33. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (bag) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,15) Å (right).
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Figure S34. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (bag) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,8.5) Å (right).
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Figure S35. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (bag) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,7.5) Å (right).
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Figure S36. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (bag) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,7.0) Å (right).
![Page 41: Supporting Information forskkim.skku.edu/abstract/supporting-paper67.pdf · 2019-06-19 · S1 Supporting Information for “Two-Dimensional Icy Water Clusters Between a Pair of Graphene-Like](https://reader035.fdocuments.in/reader035/viewer/2022081222/5f784546c5a3a60c852cc68d/html5/thumbnails/41.jpg)
S41
Figure S37. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (bag) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,6.4) Å (right).
![Page 42: Supporting Information forskkim.skku.edu/abstract/supporting-paper67.pdf · 2019-06-19 · S1 Supporting Information for “Two-Dimensional Icy Water Clusters Between a Pair of Graphene-Like](https://reader035.fdocuments.in/reader035/viewer/2022081222/5f784546c5a3a60c852cc68d/html5/thumbnails/42.jpg)
S42
Figure S38. Geometry change of (H2O)6 (bag) as one Cor plane is
laterally displaced from the other.
![Page 43: Supporting Information forskkim.skku.edu/abstract/supporting-paper67.pdf · 2019-06-19 · S1 Supporting Information for “Two-Dimensional Icy Water Clusters Between a Pair of Graphene-Like](https://reader035.fdocuments.in/reader035/viewer/2022081222/5f784546c5a3a60c852cc68d/html5/thumbnails/43.jpg)
S43
3-4. Cor/(H2O)6 (cage)/Cor
Figure S39. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (cage) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,15) Å (right).
![Page 44: Supporting Information forskkim.skku.edu/abstract/supporting-paper67.pdf · 2019-06-19 · S1 Supporting Information for “Two-Dimensional Icy Water Clusters Between a Pair of Graphene-Like](https://reader035.fdocuments.in/reader035/viewer/2022081222/5f784546c5a3a60c852cc68d/html5/thumbnails/44.jpg)
S44
Figure S40. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (cage) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,8.5) Å (right).
![Page 45: Supporting Information forskkim.skku.edu/abstract/supporting-paper67.pdf · 2019-06-19 · S1 Supporting Information for “Two-Dimensional Icy Water Clusters Between a Pair of Graphene-Like](https://reader035.fdocuments.in/reader035/viewer/2022081222/5f784546c5a3a60c852cc68d/html5/thumbnails/45.jpg)
S45
Figure S41. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (cage) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,7.5) Å (right).
![Page 46: Supporting Information forskkim.skku.edu/abstract/supporting-paper67.pdf · 2019-06-19 · S1 Supporting Information for “Two-Dimensional Icy Water Clusters Between a Pair of Graphene-Like](https://reader035.fdocuments.in/reader035/viewer/2022081222/5f784546c5a3a60c852cc68d/html5/thumbnails/46.jpg)
S46
Figure S42. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (cage) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,7.0) Å (right).
![Page 47: Supporting Information forskkim.skku.edu/abstract/supporting-paper67.pdf · 2019-06-19 · S1 Supporting Information for “Two-Dimensional Icy Water Clusters Between a Pair of Graphene-Like](https://reader035.fdocuments.in/reader035/viewer/2022081222/5f784546c5a3a60c852cc68d/html5/thumbnails/47.jpg)
S47
Figure S43. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (cage) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,6.4) Å (right).
![Page 48: Supporting Information forskkim.skku.edu/abstract/supporting-paper67.pdf · 2019-06-19 · S1 Supporting Information for “Two-Dimensional Icy Water Clusters Between a Pair of Graphene-Like](https://reader035.fdocuments.in/reader035/viewer/2022081222/5f784546c5a3a60c852cc68d/html5/thumbnails/48.jpg)
S48
3-5. Cor/(H2O)6 (prism)/Cor
Figure S44. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (prism) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,15) Å (right).
![Page 49: Supporting Information forskkim.skku.edu/abstract/supporting-paper67.pdf · 2019-06-19 · S1 Supporting Information for “Two-Dimensional Icy Water Clusters Between a Pair of Graphene-Like](https://reader035.fdocuments.in/reader035/viewer/2022081222/5f784546c5a3a60c852cc68d/html5/thumbnails/49.jpg)
S49
Figure S45. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (prism) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,9.0) Å (right).
![Page 50: Supporting Information forskkim.skku.edu/abstract/supporting-paper67.pdf · 2019-06-19 · S1 Supporting Information for “Two-Dimensional Icy Water Clusters Between a Pair of Graphene-Like](https://reader035.fdocuments.in/reader035/viewer/2022081222/5f784546c5a3a60c852cc68d/html5/thumbnails/50.jpg)
S50
Figure S46. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (prism) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,7.5) Å (right).
![Page 51: Supporting Information forskkim.skku.edu/abstract/supporting-paper67.pdf · 2019-06-19 · S1 Supporting Information for “Two-Dimensional Icy Water Clusters Between a Pair of Graphene-Like](https://reader035.fdocuments.in/reader035/viewer/2022081222/5f784546c5a3a60c852cc68d/html5/thumbnails/51.jpg)
S51
Figure S47. Interaction energy (E1) as a function of the Cor-Cor distance
(dz) for (H2O)6 (prism) between a pair of sandwiched Cors (left) and the
geometry at (dx,dy,dz) = (0,0,6.5) Å (right).
![Page 52: Supporting Information forskkim.skku.edu/abstract/supporting-paper67.pdf · 2019-06-19 · S1 Supporting Information for “Two-Dimensional Icy Water Clusters Between a Pair of Graphene-Like](https://reader035.fdocuments.in/reader035/viewer/2022081222/5f784546c5a3a60c852cc68d/html5/thumbnails/52.jpg)
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4. Many body Interaction of (H2O)2-4 clusters extracted from substrates
of this study
Ew: Total interaction energy
Edef: deformation of energy of monomers, E(2)
: two-body interaction energy,
E(3)
: three-body interaction energy, E(4)
: four-body interaction energy,
All values are in kcal/mol
Table S1. Many body Interaction energies (kcal/mol) of (H2O)2-4 clusters extracted
from substrates of this study
water substrate Ew Edef E(2) E(3) E(4)
dimer
pristine -5.05 0.09 -5.14
Cor -4.16 0.12 -4.27
DBC -4.89 0.17 -5.05
graphene -5.02 0.14 -5.16
(Cor)2 -4.76 0.22 -4.98
(DBC)2 -4.89 0.17 -5.05
(graphene)2 -4.84 0.14 -4.98
trimer
pristine -15.82 0.70 -13.69
(-11.80)a
-2.83
(-2.45)a
Cor -15.40 0.81 -13.40 -2.82
DBC -15.59 0.79 -13.55 -2.83
graphene -15.61 0.79 -13.57 -2.84
(Cor)2 -15.39 0.86 -13.45 -2.80
(DBC)2 -15.72 0.85 -13.68 -2.89
(graphene) -15.61 0.76 -13.58 -2.78
tetramer
pristine -27.42 1.51 -22.52
(-18.56)a
-5.91
(-6.23)a
-0.54
(-0.54)a
Cor -27.25 1.59 -22.45 -5.85 -0.54
DBC -27.22 1.53 -22.39 -5.83 -0.53
graphene -27.34 1.58 -22.47 -5.70 -0.74
(Cor)2 -27.20 1.72 -22.48 -5.88 -0.56
(DBC)2 -27.30 1.62 -22.49 -5.88 -0.64
(graphene)2 -27.24 1.64 -22.46 -5.81 -0.61
aMP2/aug-cc-pVDZ results from “Hodges et al. J. Phys. Chem. A. 1997, 101, 9163”.