RASopathies...The RASopathies Noonan 1:1000 to 2500 BRAF CBL KRAS LZTR1 MAP2K1 (MEK1) NRAS PTPN11...
Transcript of RASopathies...The RASopathies Noonan 1:1000 to 2500 BRAF CBL KRAS LZTR1 MAP2K1 (MEK1) NRAS PTPN11...
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RASopathies
2ndAnnualRAS-TargetedDrugDevelopmentSummit
WorkshopF
9/14/2020
BethStronach,PhD,RASopathiesNet
BruceD.Gelb,MD,IcahnSchoolofMedicineatMountSinai
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PhotosbyRickGuidottiofPOSITIVEEXPOSURE“Changehowyousee,Seehowyouchange”
W
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Hi,I’mSam
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Introductions
BethStronach,LisaSchoyer,ElisabethParker,LisaSchill
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Iusedtostudytissueclosureinfruitflies!
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MyRoleswithRASNet:
Co-organizingRASopathiessymposia
Writingcontent-website,newsletters,grantapplications
Curatingresearchpublicationsandopportunities
TweetingforRASNet@rasopathiesnet
AdvocatingforRASopathiesresearchandtreatmentsatmeetings
co-presenter
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Dr.BruceGelb
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MoreaboutBruce
S Physician-Scientist
S TrainedinPediatricCardiology
S MolecularGenetics
S IcahnSchoolofMedicineatMountSinai(NYC)
S Director,MindichChildHealthandDevelopmentInstitute
S Co-Direct,CardiovascularGeneticsProgram
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Topicsfortoday
S RASopathysyndromes,prevalence,manifestations
S RASopathymutationscomparedwithRAScancermutations
S GettingtotreatmentsforRASopathies
S Targetsandtreatmentconsiderations
S Preclinicalmodels
S Endpoints
S Whathaveearly/smallclinicaltrialstoldus?
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Topic1RASopathysyndromes
Prevalenceandmanifestations
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InmemoryofDr.JacquelineNoonan
Pediatriccardiologistwhodescribedapediatriccohort,inthe1960’s,withcongenitalheartdefectsandothersharedtraits
Thisdisorderwaslatercoined“Noonansyndrome”
2021marksthe20thanniversaryofthepublicationofthefirstNSgene,PTPN11(SHP2)
AssociationofCostellosyndromewithHRAS,Cardio-facio-cutaneoussyndromewithBRAF,andNeurofibromatosis-1withaRAS-Gap,ledtotheinsightthatgermlinealterationofRAS-MAPKsignalingunderliesagroupofneurodevelopmentaldisorders…
TheRASopathies
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Noonan1:1000to2500
BRAFCBL
KRASLZTR1MAP2K1(MEK1)
NRASPTPN11
RAF1RASA2RIT1
SOS1SOS2
NSML/LEOPARDBRAF
PTPN11RAF1
LegiusSPRED1
NF11:3000
NF1
Costello1:390,000
HRAS
CFC1:150,000
KRASBRAF
MAP2K1(MEK1)MAP2K2(MEK2)
MolecularGeneticsandPrevalence
inactive
Nucleus
MEK
ERK
Ras-GTP
RTK
SHP2(PTPN11)CBL
SHCGRB2 SOS
SHOC2
PPP1CB
Ras-GDP
RAF
Neurofibromin
SPRED1
CM-AVMRASA1
active
RASA1
NSLHSHOC2
PPP1CB
LZTR1
RASA2
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Syndromes
CostelloCS
Cardio-facio-cutaneousCFC
Legius/NF1-likeLS
Neurofibromatosis1NF1
NoonanandNoonan-likeNS
NSwithmultiplelentiginesNSML
NSwithlooseanagenhairNSLH
Capillarymalformation-arteriovenousmalformationCM-AVM
Aokietal,2015,JHumGen
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Castel,Rauen,McCormick,2020,NatReviews
CausalMechanisms
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Howdothesyndromesmanifest?
S Shortstature
S Characteristicfacialfeatures
S Developmentaldelay
S Congenitalheartandvalvedefects
S Gastrointestinaldysfunction
S Neurocognitiveissues,ADHD
S Bleedingandlymphaticabnormalities
S Lowmuscletone
S Pain
S Hypertrophiccardiomyopathy
S Skinandhairanomalies
S Seizures
S Cancers
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Jindaletal.,2015,DiseaseModels&Mechanisms
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HypertrophicCardiomyopathyOutcomes
Wilkinsonetal.,AmHeartJ2012
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Discussion
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Topic2RASopathyvs.Cancer
mutations
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AnalysisofcancerandRASopathygeneticdatabasesrevealsthat
~19%ofallcancercases&~4%ofdevelopmentaldisorders
containRasmutations.
EstimatingRASmutationfrequency
Prior,2020,inpress
Prior,Hood,Hartley,2020,CancerResearch
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RASopathyvs.RAScancermutations
IanA.Prior,RasVariantBiologyandContributionstoHumanDisease,inpressSource:NSEuroNetdatabase
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RASfamilyalignment
Khan,Rhett,O’Bryan,2020,BBAMolCellRes
Rasopathymutations
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RASopathyassociatedcancers
S Rhabdomyosarcoma
S HematologicJMML,AML,ALL
S Neuroblastoma
S Glioma
S Neurofibroma
S Malignantperipheralnervesheathtumor
S Bladdercancer
SomaticRAScancers
S HeadandneckSCC
S Lungadenocarcinoma
S Cutaneousmelanoma
S Thyroidcarcinoma
S Pancreaticductaladenocarcinoma
S Colorectaladenocarcinoma
S Bladderurothelialadenocarcinoma
RASopathyvs.cancermutations
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PTP
C-SH2
N-SH2
SHP2
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PTP
C-SH2
N-SH2
SubstitutionsinNoonansyndrome
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NoonanSyndromevs.Cancer
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NoonanSyndromevs.Cancer
ImmunocomplexPhosphataseAssays
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NoonanSyndromevs.Cancer
K76 SHP-2
D308 SHP-2
RTK
Growth Factor
Ras-GDP
Ras-GTP
Phenotype Embryonic Lethal
K76 SHP-2 Ras-GTP
GM-CFS
GMRb
GMRa
Proliferation
D308 SHP-2Ras-GDP
NoonanSyndrome Cancer
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RASopathyvs.cancermutations
Jindaletal,2017,PNAS
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Castel,Rauen,McCormick,2020,NatReviews
TheHapplehypothesis
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RASopathyvs.Cancermutations
Ras:BeatingheartofcancerbyDarrylMcConnell
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Discussion
Break
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Topic3GettingtoTreatments:
Targetsandtreatmentconsiderations
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TargetsandTreatment
S Manymoleculartargets
S Commonfeature:HyperactiveRAS/MAPKsignaling(autosomaldominantGOF,haploinsufficientorLOF)
S Multi-systempathology
S Nocurrenttreatmentsorcuresbeyondsymptommanagement
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Treatmentconsiderations
S Turnvolumedown,notoff
S Multi-system,multi-organ
S Timingandduration
S Minimalchanceofescapethroughmutationselection
S Somepotentialindicationsnotlife-threatening
S Applicabilityofsideeffectprofilefrompatientswithcancer?
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TreatmentconsiderationsIntegrins
ESR
P
GgGb
BAD
DAG
GTP
EPAC
B-Raf
Raf1
A-Raf
SOS
MEKK1
P
IkBa
NF-kB
IkBDegradation
NF-kB
P
P
P
Rac
FAKSHC
GRB2
EGFRSignaling
P
P
P
STAT1/3c-Myc
c-MaxP P P
PP
P
P
P P
P P
P CREB
c-Fos
c-Jun
MLCKFAK
P
P
P
P
P
PHistone
H3PHMG14
P
KSR
SHCPYK2
Src
UBF
p53Elk1
Pax6
PKA
MNK1/2
Ca2+
PLCb
PAK
MKP
VHR
cAMP
Rap1
PI3K
PP1/PP2
BRF1 GeneExpression
Cell Survival
Translation
Translation
Proliferation
Tumorigenesis
Differentiation
Development
Cell Survival
Migration
Raf
EGFR
Hormones,
Neurotransmitters
SOS
ZAP70
PKC
SOS
P
Gene
Expression
SRFP
EtsP
Ga
Gen
eE
xp
ressio
n
MEK1/2
MP1
ERK 1/2
MSK1/2
SAP1/2
G
P
C
R
N
C
p90RSK
IKKa
TGR-CD3Complex
AgECM
CaC
n
Ca2+CytokinesGrowth
Factors
RTK
AC
LAT
ATF1
Calpain
c-Raf
GRB2
PLCg
RasGTP
2009ProteinLounge.comC
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Treatmentconsiderations
Goyal,NatGenetics2017
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Treatmentconsiderations
Goyal,NatGenetics2017
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Treatmentoptions
S Smallmoleculeinhibitors[RAS,RAF,MEK,ERK,SHP2,SOS1]
S RNAsilencing
S Degradation
S Genetherapy[NF]
S Geneediting/Baseediting
S Othercellularvulnerabilities
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Topic3GettingtoTreatments:
PreclinicalModels
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PreclinicalModels
S Cell-based
S Inducedpluripotentstemcell-derivedcells(e.g.,cardiomyocytes)
S Animal
S Fruitfly
S Zebrafish
S Mouse
S Worm
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PreclinicalRaf1Mouse
Wuetal.,JClinInvest2011
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PreclinicalRaf1Mouse
Wuetal.,JClinInvest2011
S MAPKsignaling
S IncreasedErkactivation
S Nochangeinp38orJnk
S Mekinhibitor(PD0325901)
S 6-weektreatmentsfrom4weeksofage
S Rescuedthehypertrophiccardiomyopathy
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BirthDefectsResearch,2020
Methods:RNAormorpholinoinjectionNf1KO,transgeneinsertionHighthroughputscreening
Phenotypicassays:
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Jindaletal.DiseaseModels&Mechanisms(2015)8,769-782
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Topic3GettingtoTreatments:
Endpoints
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Naturalhistorystudy
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Howdothesyndromesmanifest?
S Shortstature
S Developmentaldelay
S Neurocognitiveissues,ADHD
S Congenitalheartandvalvedefects
S Gastrointestinaldysfunction
S Cancers
S Bleedingandlymphaticabnormalities
S Lowmuscletone
S Pain
S Hypertrophiccardiomyopathy
S Skinandhairanomalies
S Seizures
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NeurocognitiveImpairment
S Treatable?
S AnimalPTPN11modelsS Fruitflies
S NotdevelopmentalS NormalizedwithSHP-2inhibitor
S MouseS NeurobehavioraldeficitsS AmelioratedwithMEKinhibition
S HumangeneticdataS SOS1
S NoonansyndromewithnormalneurodevelopmentS Onlyexpressedinfetalbrain
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Topic3GettingtoTreatments:
ProofofConceptTrials
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Proofofconcepttrials
S MEKinhibitorSelumetinibforNF1–associatedinoperableplexiformneurofibromas
S Mosthaddurabletumorshrinkageandclinicalbenefit
S RecentFDAapprovalforpediatriccases
S A.Grossetal.2020NEJM[ph2trial]
S Off-labeluseofMEKinhibitorTrametinibforRIT1-associatedHCMin2infants(13and14wksofage)
S AssociatedwithreversalofHCMandvalvularobstructionover17monthsoftherapy
S G.Andelfingeretal.2019JACC
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TrametinibforHCM
LVMass Pro-BNP
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TrametinibforLymphaticDisease
S Lietal.,NatureMedicine2019S Centralconductinglymphaticanomaly(CCLA)
S ARAFgain-of-functionmissensevariantS ComparableallelesinRAF1forNoonansyndrome
S ZebrafishmodelS RecapitulatedlymphaticphenotypeS Treatedwithcobemitinib
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TrametinibforLymphaticDisease
Before After
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TrametinibforLymphaticDisease
Before After
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Engagedadvocacygroups
Socialmediagroups
HOWCANWEHELP?
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Discussion
MovingForward-WhatisfeasiblefortheRASopathies?
END
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Moore,Rosenberg,McCormick,Malek,2020,NatRevDrugDiscov
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● Noonansyndrome(NS)[PTPN11,SOS1,RAF1,BRAF,KRAS,NRAS,(SHOC2),CBL,RRAS,
RIT1,(RASA2),SOS2,MAP3K8,SPRY1,MYST4,LZTR1,(A2ML1)]
● Noonansyndromewithmultiplelentigines(NSML)[PTPN11,RAF1]>formerlyLEOPARDsyndrome
● Noonan-likesyndromewithlooseanagenhair(NS-LH)[SHOC2,PPP1CB]>SHOC2(NS-LH1)
>PPP1CB(NS-LH2)
● Cardio-facio-cutaneoussyndrome(CFC)[BRAF,MAP2K1,MAP2K2,KRAS]
● Costellosyndrome(CS)[HRAS]
● Neurofibromatosistype1(NF1)[NF1-neurofibromin]
● Legiussyndrome/NF1-like(LS)[SPRED1]
● Capillarymalformation-arteriovenousmalformationsyndrome(CM-AVM1)[RASA1]
● Centralconductinglymphaticanomaly(CCLA)[ARAF]
RASopathySyndromeGenes