Oxidative stress 2014
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Transcript of Oxidative stress 2014
Sample & Assay Technologies Oxidative Stress and ROS Signaling
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Contact Technical Support
North America:• [email protected]• [email protected]
Phone: 1-800-362-7737
International customers:[email protected]
Webinar related questions: [email protected]
Sample & Assay Technologies Legal Disclaimer
� QIAGEN products shown here are intended for molecular biology applications. These products are not intended for the diagnosis, prevention, or treatment of a disease.
� For up-to-date licensing information and product-specific disclaimers, see the respective QIAGEN kit handbook or user manual. QIAGEN kit handbooks and user manuals are available at www.QIAGEN.com or can be requested from QIAGEN Technical Services or your local distributor.
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Sample & Assay Technologies Oxidative Stress and ROS Signaling
� Overview� Oxidants & antioxidant in biological
systems
� Antioxidant defense mechanism
� Molecular targets of oxidative stress
� Detection of oxidative stress
� Research Solutions @ QIAGEN� Gene expression
� Epigenetics
� Functional studies
� Application Examples
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Sample & Assay Technologies Oxidative stress and ROS signaling
� Oxidative stress : imbalance between reactive oxygen species (ROS) and antioxidants.
� Under normal conditions, cells are able to balance the production of oxidants and antioxidants. Oxidative stress occurs when cells are subjected to excess levels of ROS or as a result of antioxidant depletion.
� ROS: chemically reactive molecules containing oxygen, highly reactive
� Under normal conditions, ROS are natural byproducts. It also can be generated by exogenous sources.
� Major sources of ROS: mitochondria, peroxisome, plasma membrane/cytoplasm.
Role of reactive oxygen species in cell signaling pathways, Biochemical and Biomedical Aspects of Oxidative Modification 2001
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Endogenous sources
MitochondriaPeroxisomes
Cytochrome P450
Exogenous sourcesUV light
Inflammatory cytokines
Pathogens
AntioxidantsVitamin ESeleniumLycopeneGreen tea
SNPsDNA repairOxidative enzymes
ROSOxidative Stress
Damage to DNA, RNA, protein and
lipids
Chromosomal instability, gene
mutations
Altered gene expression
Sample & Assay Technologies The biological importance of ROS
Physiological positive effects of ROS
� Kill microorganism
� Second messenger (H2O2)
� Cellular differentiation & proliferation
� Regulate signal transduction & transcription
� Cytokines and growth factor receptors (EGFR, PDGFR, VEGFR, receptors of TNFα, IFNγ and IL-1β)
� Non-receptor tyrosine kinases (JAK, Src, MAPK and PI3K)
� Protein tyrosine phosphatases
� Serine/Threonine kinases (Akt, PKC and MAPK)
� Nuclear transcription factors (NFκ B, AP-1, NFAT, HIF-1 and Nrf2)
Oxidative Stress and Oxidative Damage in Carcinogenesis, Toxicologic Pathology, 38: 96-109, 2010
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ROS
PLCγ
PI3KAkt ATM
NFkB
ERKJNKp38
NFAT
JAK
PKC
p53C-Jun
Nrf2
Gene expression changes
Sample & Assay Technologies Antioxidant defense mechanism
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� Inhibit excess ROS formation, capture radicals, maintain redox homeostasis
and correct mechanism of destroyed biomolecules
� Mediated through Antioxidant Responsive Element (ARE) sequence
� Controlled by nuclear transcription factors Nrf2, AP-1, NFκB, p53, NFAT
ROS Transcription factors
Transcription
ARE AREAntioxidant response elements (AREs)
Sample & Assay TechnologiesNrf2-mediated oxidative stress response
Nrf2: Nuclear factor-erythroid 2-related
factor is a basic leucine zipper (bZIP)
transcription factor that binds to ARE to
activate transcription.
Keap1: Kelch-like ECH-associated
protein 1. Keap1 interacts with Nrf2 in a
redox-sensitive manner.
Inactive Nrf2 is retained in the
cytoplasm by association with Keap1.
Upon exposure to oxidative stress, Nrf2
is phosphorylated in response to the
PKC, PI3K, and MAPK pathways. After
phosphorylation, Nrf2 is translocated to
the nucleus, binds AREs, and activates
detoxifying enzymes and antioxidant
enzyme.
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Sample & Assay Technologies Antioxidants – maintain oxidative balance
� Non-enzymatic antioxidants
� Alpha tocopherol (vitamin E)
� Ascorbic acid (vitamin C)
� Beta carotene
� Antioxidant enzymes
� Superoxide dismutase (SOD) O2−● + O2
−● + 2H+ � O2 + H2O2
� Catalase (CAT) 2 H2O2 � 2 H2O + O2
� Glutathione peroxidase (GPx) 2 G-SH + R-O-OH � G-S–S-G + R-OH + H2O
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Sample & Assay Technologies- 9 -
Antioxidant Action of Vitamin-C
Vitamin-C is a potent antioxidant and a regulator of redox-signal transduction
Under stress, Vitamin-C acts as a primary antioxidant in plasma and cells
Vitamin-C quenches ROS and serves as a cofactor of enzymes involved in the synthesis of collagen, carnitineAnd neurotransmitters
https://www.qiagen.com/geneglobe/pathwayview.aspx?pathwayID=34&
Sample & Assay Technologies Oxidative damage of ROS
� Aggregation and fragmentation
� Enzyme inhibition
Proteins� DNA strand breaks� Mutations leading
to cancer
DNA� Lipid peroxidation� Damage to
membranes and lipoproteins
Membrane
ROS
Oxidative stress, disease and aging
Review article: “Molecular targets of oxidative stre ss” Biochem. J. (2011) 434, 201
What is the cellular targets of ROS that account fo r the toxicity ?
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Sample & Assay Technologies Overview of oxidative stress & ROS
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Sample & Assay Technologies Diseases associated with oxidative stress
Diabetes
COPD
Neuro-degeneration
Asthma
Cardio-Vasculardisease
Dermatitis
Infertility
Athero-sclerosis
Cancer
OxidativeStress
inflammationChronic inflammation
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Oxidative Oxidative stress
Sample & Assay Technologies Oxidative stress links chronic inflammation & cancer
Oxidative stress, chronic inflammation, and cancer are closely linked
� Free radicals as a link of oxidative stress to inflammation and cancer
Oxidative stressOxidative stress
Carbonylic adducts Hydro & lipoperoxides Imbalance in DNA repair
Imbalance between pro & anti-apoptotic processes, altered gene expression & mutations
Chronic inflammation
Activation of Inflammatory cells
ROS production
LOXs, COXs, PHGPx iNOS
NFkBCytokines
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Sample & Assay Technologies ROS play multiple roles in the hallmarks of cancers
Review article: “Oxidative Stress, Tumor Microenvironment, and Metabolic Reprogramming: A Diabolic Liaison” International Journal of Cell Biology. 2012
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Sample & Assay Technologies
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� Oxidative stress is tightly linked to
mitochondrial dysfunction, and
mitochondria are both generators of
and targets of ROS
� In respond to cellular stress,
necrosis, apoptosis and autophagy
are activated.
� Mitochondrial turnover is dependent
on autophagy
� Dysregulated redox signaling or
mitochondrial dysfunction affect
autophagic activities
Mitochondria are the targets of ROS
Review article: “Autophagy, mitochondria and oxidative stress: cross-talk and redox signaling” Biochem. J. 2012, 441, 523
Sample & Assay Technologies miRNAs are modulators and targets of oxidative stress
“Inflammation and cancer: interweaving microRNA, free radical, cytokine and p53 pathways” Carcinogenesis, 31(1): 37–49, 2010
miRNAs are non-coding RNA molecules that modulate the stability and/or the translational efficiency of target messenger RNAs
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“Oxidative Stress and MicroRNAs in Vascular Diseases” Int. J. Mol. Sci. 2013, 14
Relevant miRNAs in oxidative stress response
ROS source
miRNAs
upregulated Tissue/organ Source Target Functions
H2O2 miR-200c
miR-141 endothelium
miR-200a myoblasts Human ZEB1 apoptosis
miR-200b
miR-429
H2O2 miR-200c ROS accumulation;
miR-141 miR-200a ovarian Human p38α improved response to
miR-200b adenocarcinomas chemotherapy
miR-429
H2O2 miR-200c primary Mouse Unknown Unknown
hippocampal
neurons
Obesity miR-200c miR-141 Heart Rat S6K1 compensatory/adaptive
mechanisms
Sample & Assay Technologies Detection of intracellular oxidative stress
� Direct approach� Detection of ROS / free radicals
� Colorimetric (ROS-dependent reactions), fluorometric (ROS-sensitive probes)
� Challenging: short-lived, highly reactive molecules
� Indirect approach� Antioxidant enzyme activity
� Detect oxidative stress damage products
� Measure cellular antioxidant capacity
� Simple: more stable modifications of macromolecules
� Wide range of techniques
Untreated Cells
Treated Cells
The cell-permeant dye H2-DCF-DA is non-fluorescent in a reduced state and exhibits fluorescence upon oxidation by ROS.
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Sample & Assay Technologies Detection of oxidative damage to macromolecules
� Lipid markers of oxidative stress� 4-Hydroxynonenal (HNE) is a by-product of lipid peroxidation, widely used as a
marker of chronic oxidative stress
� Protein markers of oxidative stress� Protein carbonylation – formation of carbonyl derivatives of Pro, Lys, Arg and Thr
residues – is the most common product of protein oxidation (ELISA assay).
� Advanced oxidation protein products (AOPP) are created when proteins react with chlorinated oxidants.
� DNA markers of oxidative stress� 8-hydroxydeoxyguanosine (8-OHdG)
� Antioxidant assays� Catalase activity, SOD activity
� Total antioxidant capacity
� GSH levels
Avery SV. Molecular targets of oxidative stress. Biochem J. 2011 Mar 1;434(2):201-10.
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Sample & Assay Technologies Oxidative Stress and ROS Signaling
� Overview� Oxidants & antioxidant in biological
systems
� Antioxidant defense mechanism
� Molecular targets of oxidative stress
� Detection of oxidative stress
� Research Solutions @ QIAGEN� Gene expression
� Epigenetics
� Functional studies
� Application Examples
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Sample & Assay Technologies Oxidative stress studies: experiment design
Functional studies
Epigenetics
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Gene expression
Sample & Assay Technologies Pathway-focused solution for gene expression analysis
RT2 Profiler PCR Arrays
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• 84 pathway-specific genes of interest
• 5 housekeeping genes
• Genomic DNA contamination control
• Reverse transcription controls (RTC) n=3
• Positive PCR controls (PPC) n=3
B2M, HPRT, RPL13A, GAPDH, HGDC
Sample & Assay Technologies Application 1: gene expression
In response to cellular oxidative stress, pathways including necrosis, apoptosis, and autophagy will be activated.
.How is cell fate determined under oxidative stress?
FASEB J. 2011 October; 25(10): 3366FASEB J. 2011 October; 25(10): 3366FASEB J. 2011 October; 25(10): 3366
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Sample & Assay Technologies
Experiment design
Treat with glucocorticoid
Isolate total RNA
Reverse transcription
(RT)
Data Analysis
cDNA synthesis
qPCR
Swiss-Webster mice MLO-Y4 cells
Application 1: gene expression
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1-2 pm EST, Feb. 3, 10, 17, 24, Monday, qPCR Technol ogy webinar series
https://www2.gotomeeting.com/register/311390954
Sample & Assay Technologies
Pathway-focused RT2 Profiler PCR Arrays
Apoptosis RT 2 Profiler PCR Array: 84 genes involved in programmed cell
death
Include: genes involved in induction of apoptosis, anti-apoptosis, regulation of
apoptosis, DEATH domain proteins, caspases and regulators
Autophagy RT 2 Profiler PCR Array: 84 genes involved in autophagy
Include: autophagy machinery components, regulation of autophagy
Oxidative stress RT 2 Profiler PCR Array: 84 genes involved in oxidative
stress
Application 1: gene expression
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human, mouse, rat, and up to 13 species
Sample & Assay Technologies
Oxidative Stress RT2 Profiler PCR Array
- human, mouse, rat, and more
Antioxidants:Glutathione Peroxidases (GPx): GPX1, GPX2, GPX3, GPX4, GPX5, GPX6, GPX7, GSTP1, GSTZ1.
Peroxiredoxins (TPx): PRDX1, PRDX2, PRDX3, PRDX4, PRDX5, PRDX6 (AOP2).
Other Peroxidases: CAT, CYBB, CYGB, DUOX1, DUOX2, EPX, LPO, MGST3, MPO, PTGS1, PTGS2 (COX2), PXDN, TPO, TTN.
Other Antioxidants: ALB, APOE, GSR, MT3, SELS, SOD1, SOD3, SRXN1, TXNRD1, TXNRD2.
Genes Involved in ROS Metabolism:Superoxide Dismutases (SOD): SOD1, SOD2, SOD3.
Other Genes Involved in Superoxide Metabolism: ALOX12, CCS, DUOX1, DUOX2, GTF2I, MT3, NCF1, NCF2, NOS2 (iNOS), NOX4, NOX5, PREX1, UCP2.
Other Genes Involved in ROS Metabolism: AOX1, BNIP3, EPHX2, MPV17, SFTPD.
Oxidative Stress Responsive Genes: APOE, ATOX1, CAT, CCL5 (RANTES), CYGB, DHCR24, DUOX1, DUOX2, DUSP1 (PTPN16), EPX, FOXM1, FTH1, GCLC, GCLM, GPX1, GPX2, GPX3, GPX4, GPX5, GPX6, GPX7, GSR, GSS, HMOX1, HSPA1A, KRT1, LPO, MBL2, MPO, MSRA, NQO1, NUDT1, OXR1, OXSR1, PDLIM1, PNKP, PRDX2, PRDX5, PRDX6 (AOP2), PRNP, RNF7, SCARA3, SELS, SEPP1, SIRT2, SOD1, SOD2, SQSTM1, SRXN1, STK25, TPO, TTN, TXN, TXNRD1, TXNRD2.
Oxygen Transporters: CYGB, MB.
Application 1: gene expression
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Sample & Assay Technologies
Results: Excess GC (glucocorticoid) decreased the expression of oxidative stress responsive genes
Application 1: gene expression
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Sample & Assay Technologies Application 1: oxidative stress & autophagy
Results:• Activation of the antioxidant genes positively correlated with activation of the autophagic
genes• No significant correlation between the activation of antioxidant and antiapoptosis genes
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Sample & Assay Technologies Application 1: gene expression in oxidative stress
RT2 Profiler PCR Arrays
� Apoptosis
� Autophagy
� Necrosis
� Cell Death Pathwayfinder
� Chemokines & Receptors
� Cytokines & Chemokines
� DNA Damage Signaling
� Hypoxia Signaling
� IL6/STAT3 Signalin
� Inflammatory Cytokines &
Receptors
� Inflammatory Response &
Autoimmunity
� Oxidative Stress
� JAK / STAT Signaling
� MAP Kinase Signaling
� mTOR Signaling
� NFkB Signaling
� TNF Signaling
� Toll-Like Receptor Signaling
� Transcription Factors
� p53 Signaling
� PI3K-AKT Signaling
� VEGF Signaling
� WNT Signaling
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Sample & Assay Technologies Oxidative stress: gene expression
Apoptosis:
Pro-Apoptotic: ABL1, APAF1, ATP6V1G2, BAX, BCL2L11, BIRC2 (c-IAP2), CASP1 (ICE), CASP3, CASP6,
CASP7, CASP9, CD40 (TNFRSF5), CD40LG (TNFSF5), CFLAR (CASPER), CYLD, DFFA, FAS (TNFRSF6),
FASLG (TNFSF6), GADD45A, NOL3, SPATA2, SYCP2, TNF, TNFRSF1A, TNFRSF10A (TRAIL-R), TP53.
Anti-Apoptotic: AKT1, BCL2, BCL2A1 (Bfl-1/A1), BCL2L1 (BCL-X), BIRC3 (c-IAP1), CASP2, IGF1R, MCL1,
TNFRSF11B, TRAF2, XIAP.
Autophagy: AKT1, APP, ATG12, ATG16L1, ATG3, ATG5, ATG7, BAX, BCL2, BCL2L1 (BCL-X), BECN1,
CASP3, CTSB, CTSS, ESR1 (ERa), FAS (TNFRSF6), GAA, HTT, IFNG, IGF1, INS, IRGM, MAP1LC3A,
MAPK8 (JNK1), NFKB1, PIK3C3 (VPS34), RPS6KB1, SNCA, SQSTM1, TNF, TP53, ULK1.
Necrosis: ATP6V1G2, BMF, C1orf159, CCDC103, COMMD4, CYLD, DEFB1, DENND4A, DPYSL4, EIF5B,
FOXI1, GALNT5, GRB2, HSPBAP1, JPH3, KCNIP1, MAG, OR10J3, PARP1 (ADPRT1), PARP2, PVR, RAB25,
S100A7A, SPATA2, SYCP2, TMEM57, TNFRSF1A, TXNL4B.
Cell Death PathwayFinder PCR Array
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Sample & Assay Technologies Applications of oxidative stress PCR Arrays
Publications Citing the Oxidative Stress PCR Array
• Susceptibility to Inhaled Flame-Generated Ultrafine Soot in Neonatal and Adult Rat Lungs, TOXICOLOGICAL SCIENCES 124(2), 472–486 (2011), Jackie K. W. Chan,* Michelle V, etc.
• Adaptive induction of NF-E2-related factor-2-driven antioxidant genes in endothelial cells in response to hyperglycemia, Am J Physiol Heart Circ Physiol 300: H1133–H1140, 2011, Zoltan Ungvari,1 Lora Bailey-Downs, etc.
• Tryptophan from human milk induces oxidative stress and upregulates the Nrf-2-mediated stress response in human intestinal cell lines. J Nutr. 2011 Aug;141(8):1417-23. Elisia I, Tsopmo A, Friel JK, etc.
• Age-related gene response of human corneal endothelium to oxidative stress and DNA damage. Invest Ophthalmol Vis Sci. 2011 Mar 1;52(3):1641-9. Joyce NC, Harris DL, Zhu CC
• Gene expression analysis of oxidative stress and apoptosis in proton-irradiated rat retina. In Vivo. 2010 Jul-Aug;24(4):425-30. Mao XW, Green LM, Mekonnen T, Lindsey N, Gridley DS
• Increased ANG II sensitivity following recovery from acute kidney injury: role of oxidant stress in skeletal muscle resistance arteries. Am J Physiol Regul Integr Comp Physiol. 2010 Jun;298(6):R1682-91. Phillips SA, etc.
• Effects of spaceflight on innate immune function and antioxidant gene expression. J Appl Physiol. 2009 Jun;106(6):1935-42. Baqai FP, Gridley DS, Slater JM, Luo-Owen X, Stodieck LS, Ferguson V, etc.
• Oxidative stress: molecular perception and transduction of signals triggering antioxidant gene defenses. Braz J Med BiolRes. 2005 Jul;38(7):995-1014. Scandalios JG
• Oxidative stress and gene regulation. Free Radic Biol Med. 2000 Feb 1;28(3):463-99. Allen RG, Tresini M
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Sample & Assay Technologies
Transcription factors Nrf2 and Nrf1 bind to the antioxidant response elements (ARE) and regulate genes involved in protecting cells from oxidative damages.
.How to measure the degree of antioxidant response?
Application 2: gene functions
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Sample & Assay Technologies Application 2: reporter assays for oxidative stress
Cignal Reporter Assays & Arrays
■ Dual-luciferase format
■ GFP format
■ DNA and Lenti assay
■ 45 signaling pathways
http://www.qiagen.com/search/cignal-reporter-assay-kits
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Sample & Assay Technologies
45-pathway array & 10-Pathway Arrays
Single Pathway Assay
Antioxidant Response ReporterCignal Finder Stress & Toxicity 10-pathway reporter Kit
Measure the transcriptional activity of the Nrf2 (NF-E2-related factor 2) and Nrf1 transcription factors. Nrf2 and Nrf1 bind to the antioxidant response elements (AREs) and regulate genes involved in protecting cells from oxidative damage.
Application 2: reporter assays for oxidative stress
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Sample & Assay Technologies
Answer two questions:
1. Whether hyperglycemia activates Nrf2 in endothelial cells?
2. Whether induction of Nrf2-regulated ROS detoxification systems protect
endothelial function in type 2 diabetes?
Experiment procedure: • Treat wild type and Nrf2 knockout mouse with a high-fat diet (HFD) and standard diet
• Use reporter assay to measure Nrf2 activity
Application 2: reporter assays for oxidative stress
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Published data using Cignal reporter assay kit
Sample & Assay Technologies
Results & conclusion: • Hyperglycemia induces oxidative stress
• Adaptive activation of the Nrf2/ARE pathway has a critical role in endothelial protection in response
to diabetic condition both in vitro and in vivo.
Application 2: reporter assays for oxidative stress
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Glucose (mmol/L)
Rel
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e N
rf2
indu
ctio
n (f
old
chan
ge)
Glucose (mmol/L)
Rel
ativ
e m
RN
A e
xpre
ssio
n (f
old
chan
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Sample & Assay Technologies
Functional genomics:
�Assess RNA interference phenotypes
�Assess overexpression phenotypes
Functional proteomics:
�Analyze the effects of recombinant protein or peptide treatments
Drug discovery:
�Screen and validate small molecule drug candidates
Applications: Cignal reporter assay kits
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Download a white paper “Cignal Reporter Assay Kit: A high-performance tool for assessing the functions of genes, biologics, and small molecule compounds - (EN)”
http://www.qiagen.com/knowledge-and-support/resource-center/resource-download.aspx?id=6fc8144b-010b-43d8-9125-bf541a5d9c9c&lang=en
Benefits�Excellent sensitivity and specificity
�Maximal signal-to-noise ratio
�Minimal background transcription and rapid response
�Reduced experimental variation and greater reliability
Sample & Assay Technologies Application 3: antioxidant response mechanism
miRNAs play a regulatory role in Nrf2/Keap1 pathway
� How is Keap1 regulated?
� What is the mechanism of Nrf2-dependent antioxidant
response in cancer?
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• Dysregulation of the NRF2 signaling pathway is linked to cancer chemotherapy resistance
• Nrf2 may contribute to tumorigenesis• Nrf2 as a miRNA transcription factor• A number of miRNAs are regulated by Nrf2
Sample & Assay Technologies Application 3: miRNA expression profiling
Human breast cancer cell lines MDA-MB-231 and Hs578T, non-tumorigenic MCF-10A cells
� Profiled the expressions of 84 miRNAs using Human miFinder PCR Array (MIHS-001Z)
Experiment design:
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Sample & Assay Technologies miScript miRNA PCR Arrays
� 1 hour
� 2 minutes
� 2 hours
� 15 minutes
miFinder miRNA PCR Array
• Profiles the expression of the 84 most abundantly expressed and best characterized miRNAs in miRBase (www.miRBase.org);
• Maximize the likelihood of discovering miRNAs whose expression patterns correlate with the biological phenotypes;
• Available in Human, Mouse, Rat, Dog, Rhesus Macaque, more
miRNA PCR Array• miFinder• Serum & Plasma• Brain Cancer• Breast Cancer• Ovarian Cancer• Prostate Cancer • Cancer PathwayFinder• Apoptosis• Inflammatory Response and
Autoimmunity
Workflow
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Sample & Assay Technologies Application 3: miRNA expression profiling
� Conclusion: miR-200a regulates the Keap1/Nrf2 pathway in mammary epithelium ; Epigenetic therapy can restore the miR-200a regulation of Keap1 expression, therefore to reactivate Nrf2-dependent antioxidant pathway in breast cancer.
� Measured Nrf2 ARE promoter activity using luciferas e reporter assay
� Epigenetic therapy restored miR-200 expression and reduced Keap1 level
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• miR-200c is a tumor suppressor miRNA, involved in cancers such as breast, ovarian, endometrial, colorectal cancer, and pancreatic cancer
Normal cell: MCF-10A
Bre
ast c
ell l
ine:
MD
A-M
B-2
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Mature miRNAs Fold changes
has-miRNA-141 -869.07
has-miRNA-200c -422.65
has-miRNA-2302c -66.41
has-miRNA-196b -65.95
has-miRNA-143 -40.32
has-miRNA-122 -18.68
has-miRNA-7f -15.07
… …
Sample & Assay Technologies miRNA assays and reagents from QIAGEN
Target Identification Expression
Isolation
Function
miRNA mimics & inhibitors
miScript miRNA PCR Arrays
miRNeasy
miRNAStudies
Feb 6-27, Thursday : 4 part miRNA focused webinar series, monthlyhttps://www2.gotomeeting.com/register/152689794
RT² Profiler™ microRNA Targets PCR Arrays
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Sample & Assay Technologies Oxidative stress and DNA methylation
Stress & Toxicity PathwayFinder DNA Methylation PCR Array
Oxidative Stress: BNIP3, CYP1A1, GPX3, PRDX2, PTGS2 (COX2), SCARA3.
DNA Damage: ATM, BRCA1, CCND1, GADD45A, GADD45G, MLH1, MSH2, TP53, XPC.
Unfolded Protein Response: INSIG1, UBE2G2.
Hypoxia Signaling: CSTB, RARA.
Heat Shock Protein: DNAJC15.
Growth Arrest & Senescence: ATM, CDKN1A (p21CIP1/WAF1), GADD45A, GDF15 (PLAB), MSH2, TP53.
Inflammation: PRDX2, PTGS2 (COX2).
Anti-Apoptosis: BNIP3, CDKN1A (p21CIP1/WAF1), PRDX2.
Proliferation & Carcinogenesis: BRCA1, CCND1, CDKN1A (p21CIP1/WAF1), CYP1A1, PRDX2, PTGS2
(COX2), TP53.
EpiTect Methyl qPCRArray workflow
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Sample & Assay Technologies We provide service – send samples to us & receive results
. Whole Genome� Illumina Gene Expression Profiling� Illumina Genotyping
. Pathway / Focused Panel� Mutation Profiling� Methylation� PCR Array� miRNA PCR Array
. Individual Gene / Locus� Mutation Detection� Methylation� qPCR
. Sample Preparation – DNA, RNA Extraction and Purification� Cells, Tissue or Biofluids� Fixed Tissue� Small Sample
. http://www.qiagen.com/products/catalog/services/
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Sample & Assay Technologies
� Gene Expression� RT2 Profiler PCR Arrays & Assays� Custom PCR Arrays
� Epigenetics� miScript miRNA PCR Arrays & Assays� EpiTect Methyl qPCR Arrays & Assays� qBiomarker Somatic Mutation PCR Arrays� qBiomarker Copy Number PCR Arrays
� Functional Studies� Cignal Reporter Assays� SureSilencing shRNA Plasmid� Flexitube siRNA� Flexiplate siRNA, AllStar Control
Summary
QIAGEN offers many products for oxidative stress studies
44
Sample & Assay Technologies Pathway-focused solutions @ QIAGEN
Complete systems: sample prep through data analysis
45
http://www.qiagen.com/
http://www.qiagen.com/geneglobe/
Sample & Assay Technologies- 46 -
Thank You for Attending!
Are you ready to try?Contact Technical Support
North America:
• [email protected]• [email protected]
Phone: 1-800-362-7737
International customers:
Webinar related questions: [email protected]