Molecular Cancer Research Table of ContentsGreg D. Degala, Jimin Shin, Aik-Choon Tan,...

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Highlights of This Issue 1 PERSPECTIVE 3 Lung-Enriched Mutations in the p53 Tumor Suppressor: A Paradigm for Tissue-Specific Gain of Oncogenic Function Julie A. Barta and Steven B. McMahon CELL CYCLE AND SENESCENCE 10 Phosphatase 1 Nuclear Targeting Subunit (PNUTS) Regulates Aurora Kinases and Mitotic Progression Feifei Wang, Ling Wang, Laura A. Fisher, Chunling Li, Weidong Wang, and Aimin Peng CELL DEATH AND SURVIVAL 20 Endothelial Cells Promote Colorectal Cancer Cell Survival by Activating the HER3-AKT Pathway in a Paracrine Fashion Rui Wang, Rajat Bhattacharya, Xiangcang Ye, Fan Fan, Delphine R. Boulbes, and Lee M. Ellis CHROMATIN, EPIGENETICS, AND RNA REGULATION 30 Reversal of Triple-Negative Breast Cancer EMT by miR-200c Decreases Tryptophan Catabolism and a Program of Immunosuppression Thomas J. Rogers, Jessica L. Christenson, Lisa I. Greene, Kathleen I. O'Neill, Michelle M. Williams, Michael A. Gordon, Travis Nemkov, Angelo DAlessandro, Greg D. Degala, Jimin Shin, Aik-Choon Tan, Diana M. Cittelly, James R. Lambert, and Jennifer K. Richer DNA DAMAGE AND REPAIR 42 Repurposing of mTOR Complex Inhibitors Attenuates MCL-1 and Sensitizes to PARP Inhibition Abid R. Mattoo, Alex Joun, and J. Milburn Jessup 54 Combining Homologous Recombination and Phosphopeptide-binding Data to Predict the Impact of BRCA1 BRCT Variants on Cancer Risk Ambre Petitalot, Elodie Dardillac, Eric Jacquet, Naima Nhiri, Jos ee Guirouilh-Barbat, Patrick Julien, Isslam Bouazzaoui, Dorine Bonte, Jean Feunteun, Jeff A. Schnell, Philippe Lafitte, Jean-Christophe Aude, Catherine Nogu es, Etienne Rouleau, Rosette Lidereau, Bernard S. Lopez, Sophie Zinn-Justin, and Sandrine M. Caputo, on behalf of the UNICANCER Genetic Group BRCA network GENOMICS 70 Human Organoids Share Structural and Genetic Features with Primary Pancreatic Adenocarcinoma Tumors Isabel Romero-Calvo, Christopher R. Weber, Mohana Ray, Miguel Brown, Kori Kirby, Rajib K. Nandi, Tiha M. Long, Samantha M. Sparrow, Andrey Ugolkov, Wenan Qiang, Yilin Zhang, Tonya Brunetti, Hedy Kindler, Jeremy P. Segal, Andrey Rzhetsky, Andrew P. Mazar, Mary M. Buschmann, Ralph Weichselbaum, Kevin Roggin, and Kevin P. White 84 Integrative Epigenetic and Gene Expression Analysis of Renal Tumor Progression to Metastasis Hye-Young Nam, Darshan S. Chandrashekar, Anirban Kundu, Sandeep Shelar, Eun-Young Kho, Guru Sonpavde, Gurudatta Naik, Pooja Ghatalia, Carolina B. Livi, Sooryanarayana Varambally, and Sunil Sudarshan 97 Genomic Alterations Associated with Recurrence and TNBC Subtype in High-Risk Early Breast Cancers Timothy R. Wilson, Akshata R. Udyavar, Ching-Wei Chang, Jill M. Spoerke, Junko Aimi, Heidi M. Savage, Anneleen Daemen, Joyce A. OShaughnessy, Richard Bourgon, and Mark R. Lackner 109 A Leukocyte Infiltration Score Defined by a Gene Signature Predicts Melanoma Patient Prognosis Yanding Zhao, Evelien Schaafsma, Ivan P. Gorlov, Eva Hernando, Nancy E. Thomas, Ronglai Shen, Mary Jo Turk, Marianne Berwick, Christopher I. Amos, and Chao Cheng 120 Establishment and Genetic Landscape of Precancer Cell Model Systems from the Head and Neck Mucosal Lining D. Vicky de Boer, Arjen Brink, Marijke Buijze, Marijke Stigter-van Walsum, Keith D. Hunter, Bauke Ylstra, Elisabeth Bloemena, C. Ren e Leemans, and Ruud H. Brakenhoff January 2019 Volume 17 Number 1 Molecular Cancer Research Table of Contents iii on August 10, 2020. © 2019 American Association for Cancer Research. mcr.aacrjournals.org Downloaded from

Transcript of Molecular Cancer Research Table of ContentsGreg D. Degala, Jimin Shin, Aik-Choon Tan,...

Page 1: Molecular Cancer Research Table of ContentsGreg D. Degala, Jimin Shin, Aik-Choon Tan, DianaM.Cittelly,JamesR.Lambert,andJenniferK.Richer DNA DAMAGE AND REPAIR 42 Repurposing of mTOR

Highlights of This Issue 1

PERSPECTIVE

3 Lung-Enriched Mutations in the p53 TumorSuppressor: A Paradigm for Tissue-Specific Gainof Oncogenic FunctionJulie A. Barta and Steven B. McMahon

CELL CYCLE AND SENESCENCE

10 Phosphatase 1 Nuclear Targeting Subunit(PNUTS) Regulates Aurora Kinases and MitoticProgressionFeifei Wang, Ling Wang, Laura A. Fisher, Chunling Li,Weidong Wang, and Aimin Peng

CELL DEATH AND SURVIVAL

20 Endothelial Cells Promote Colorectal CancerCell Survival by Activating the HER3-AKTPathway in a Paracrine FashionRui Wang, Rajat Bhattacharya, Xiangcang Ye, Fan Fan,Delphine R. Boulbes, and Lee M. Ellis

CHROMATIN, EPIGENETICS, AND RNAREGULATION

30 Reversal of Triple-Negative Breast Cancer EMTby miR-200c Decreases Tryptophan Catabolismand a Program of ImmunosuppressionThomas J. Rogers, Jessica L. Christenson, Lisa I. Greene,Kathleen I. O'Neill, Michelle M. Williams,Michael A. Gordon, Travis Nemkov, Angelo D’Alessandro,Greg D. Degala, Jimin Shin, Aik-Choon Tan,DianaM. Cittelly, James R. Lambert, and Jennifer K. Richer

DNA DAMAGE AND REPAIR

42 Repurposing of mTOR Complex InhibitorsAttenuates MCL-1 and Sensitizes to PARPInhibitionAbid R. Mattoo, Alex Joun, and J. Milburn Jessup

54 Combining Homologous Recombination andPhosphopeptide-binding Data to Predict theImpact of BRCA1 BRCT Variants on Cancer RiskAmbre Petitalot, Elodie Dardillac, Eric Jacquet,Naima Nhiri, Jos�ee Guirouilh-Barbat, Patrick Julien,Isslam Bouazzaoui, Dorine Bonte, Jean Feunteun,Jeff A. Schnell, Philippe Lafitte, Jean-Christophe Aude,Catherine Nogu�es, Etienne Rouleau, Rosette Lidereau,Bernard S. Lopez, Sophie Zinn-Justin, andSandrine M. Caputo, on behalf of the UNICANCERGenetic Group BRCA network

GENOMICS

70 Human Organoids Share Structural and GeneticFeatures with Primary PancreaticAdenocarcinoma TumorsIsabel Romero-Calvo, Christopher R. Weber, Mohana Ray,Miguel Brown, Kori Kirby, Rajib K. Nandi, Tiha M. Long,Samantha M. Sparrow, Andrey Ugolkov, Wenan Qiang,Yilin Zhang, Tonya Brunetti, Hedy Kindler, Jeremy P. Segal,Andrey Rzhetsky, Andrew P. Mazar, Mary M. Buschmann,Ralph Weichselbaum, Kevin Roggin, and Kevin P. White

84 Integrative Epigenetic and Gene ExpressionAnalysis of Renal Tumor Progression toMetastasisHye-Young Nam, Darshan S. Chandrashekar,Anirban Kundu, Sandeep Shelar, Eun-Young Kho,Guru Sonpavde, Gurudatta Naik, Pooja Ghatalia,Carolina B. Livi, Sooryanarayana Varambally, andSunil Sudarshan

97 Genomic Alterations Associated with Recurrenceand TNBC Subtype in High-Risk Early BreastCancersTimothy R. Wilson, Akshata R. Udyavar, Ching-Wei Chang,Jill M. Spoerke, Junko Aimi, Heidi M. Savage,Anneleen Daemen, Joyce A. O’Shaughnessy,Richard Bourgon, and Mark R. Lackner

109 A Leukocyte Infiltration Score Defined by a GeneSignature Predicts Melanoma Patient PrognosisYanding Zhao, Evelien Schaafsma, Ivan P. Gorlov,Eva Hernando, Nancy E. Thomas, Ronglai Shen,Mary Jo Turk, Marianne Berwick, Christopher I. Amos, andChao Cheng

120 Establishment and Genetic Landscape ofPrecancer Cell Model Systems from the Headand Neck Mucosal LiningD. Vicky de Boer, Arjen Brink, Marijke Buijze,Marijke Stigter-vanWalsum, Keith D. Hunter, Bauke Ylstra,Elisabeth Bloemena, C. Ren�e Leemans, andRuud H. Brakenhoff

January 2019 � Volume 17 � Number 1

Molecular Cancer Research

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METABOLISM

131 A Role for Tryptophan-2,3-dioxygenase in CD8T-cell Suppression and Evidence of TryptophanCatabolism in Breast Cancer Patient PlasmaLisa I. Greene, Tullia C. Bruno, Jessica L. Christenson,Angelo D’Alessandro, Rachel Culp-Hill, Kathleen Torkko,Virginia F. Borges, Jill E. Slansky, and Jennifer K. Richer

140 De Novo Fatty Acid Synthesis-Driven SphingolipidMetabolism Promotes Metastatic Potential ofColorectal CancerNaser Jafari, James Drury, Andrew J. Morris,Fredrick O. Onono, Payton D. Stevens, Tianyan Gao,Jinpeng Liu, Chi Wang, Eun Y. Lee, Heidi L. Weiss,B. Mark Evers, and Yekaterina Y. Zaytseva

ONCOGENES AND TUMOR SUPPRESSORS

153 p53–Pirh2 Complex Promotes Twist1Degradation and Inhibits EMTYang Yang-Hartwich, Roslyn Tedja, Cai M. Roberts,Jamie Goodner-Bingham, Carlos Cardenas, Marta Gurea,Natalia J. Sumi, Ayesha B. Alvero, Carlotta A. Glackin, andGil Mor

165 Increased Genetic Instability and AcceleratedProgression of Colitis-Associated ColorectalCancer through Intestinal Epithelium–specificDeletion of Klf4Vincent W. Yang, Yang Liu, Julie Kim, Kenneth R. Shroyer,and Agnieszka B. Bialkowska

177 Mutational Landscape of Ovarian AdultGranulosa Cell Tumors from Whole Exome andTargeted TERT Promoter SequencingMaria Alexiadis, Simone M. Rowley, Simon Chu,Dilys T.H. Leung, Colin J.R. Stewart,Kaushalya C. Amarasinghe, Ian G. Campbell, andPeter J. Fuller

186 p53 Function Is Compromised by Inhibitor 2 ofPhosphatase 2A in Sonic HedgehogMedulloblastomaYun Wei, Victor Maximov, Sorana A. Morrissy,Michael D. Taylor, David C. Pallas, andAnna Marie Kenney

199 Hyperactivation ofMAPK Signaling Is Deleteriousto RAS/RAF-mutant MelanomaGrace P. Leung, Tianshu Feng, Frederic D. Sigoillot,Felipe C. Geyer, Matthew D. Shirley, David A. Ruddy,Daniel P. Rakiec, Alyson K. Freeman, Jeffrey A. Engelman,Mariela Jaskelioff, and Darrin D. Stuart

SIGNAL TRANSDUCTION

212 Alectinib Resistance in ALK-Rearranged LungCancer by Dual Salvage Signaling in a ClinicallyPaired Resistance ModelTakahiro Tsuji, Hiroaki Ozasa, Wataru Aoki,Shunsuke Aburaya, Tomoko Funazo, Koh Furugaki,Yasushi Yoshimura, Hitomi Ajimizu, Ryoko Okutani,Yuto Yasuda, Takashi Nomizo, Kiyoshi Uemasu,Koichi Hasegawa, Hironori Yoshida, Yoshitaka Yagi,Hiroki Nagai, Yuichi Sakamori, Mitsuyoshi Ueda,Toyohiro Hirai, and Young Hak Kim

225 The Role of Alcohol-Induced GolgiFragmentation for Androgen Receptor Signalingin Prostate CancerSonia Manca, Cole P. Frisbie, Chad A. LaGrange,Carol A. Casey, Jean-Jack M. Riethoven, andArmen Petrosyan

238 SOX9/FXYD3/Src Axis Is Critical for ERþ BreastCancer Stem Cell FunctionYue Xue, Lihua Lai, Wenwen Lian, Xintao Tu,Jiaojiao Zhou, Ping Dong, Dan Su, Xiaojia Wang,Xuetao Cao, Yiding Chen, and Qingqing Wang

250 Targeting TAZ-Driven Human Breast Cancer byInhibiting a SKP2-p27 Signaling AxisHe Shen, Nuo Yang, Alexander Truskinovsky,Yanmin Chen, Ashley L. Mussell, Norma J. Nowak,Lester Kobzik, Costa Frangou, and Jianmin Zhang

263 Targeting the MIF/CXCR7/AKT SignalingPathway in Castration-Resistant Prostate CancerShahrzad Rafiei, Bin Gui, Jiaxin Wu, X. Shirley Liu,Adam S. Kibel, and Li Jia

277 TGFb1 Cell Cycle Arrest Is Mediated by Inhibitionof MCM Assembly in Rb-Deficient ConditionsBrook S. Nepon-Sixt and Mark G. Alexandrow

289 Targeting of SGK1 by miR-576-3p InhibitsLung Adenocarcinoma Migration and InvasionEvan J. Greenawalt, Mick D. Edmonds, Neha Jain,Clare M. Adams, Ramkrishna Mitra, andChristine M. Eischen

299 miR-122-5p Expression and Secretion inMelanoma Cells Is Amplified by the LPAR3SH3–Binding Domain to Regulate Wnt1Charnel C. Byrnes, Wei Jia, Ali A. Alshamrani,Sudeepti S. Kuppa, and Mandi M. Murph

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TUMOR MICROENVIRONMENT

310 A Novel Approach for Image-Guided 131I Therapyof Pancreatic Ductal Adenocarcinoma UsingMesenchymal Stem Cell-Mediated NIS GeneDeliveryChristina Schug, Aayush Gupta, Sarah Urnauer,Katja Steiger, Phyllis Fung-Yi Cheung, Christian Neander,Konstantinos Savvatakis, Kathrin A. Schmohl,Marija Trajkovic-Arsic, Nathalie Schwenk,Markus Schwaiger, Peter J. Nelson, Jens T. Siveke, andChristine Spitzweg

321 The Aged Microenvironment Influences theTumorigenic Potential of Malignant ProstateEpithelial CellsDaniella Bianchi-Frias, Mamatha Damodarasamy,Susana A. Hernandez, Rui M. Gil da Costa,Funda Vakar-Lopez, Ilsa M. Coleman, May J. Reed, andPeter S. Nelson

332 Acknowledgment to Reviewers

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ABOUT THE COVER

In this issue, Manca and colleagues (beginning on page 225) demonstrate for the first time themolecular link between alcohol consumption and the progression of prostate cancer. Usingboth human tissue, from non-alcoholic or alcoholic patients, and ethanol-fed animals, theauthors demonstrate that ethanol is able to enhance the proliferation of prostate cancer cellsand their metastatic potential. Specifically, they found that ethanol-induced Golgifragmentation is associated with the relocation of glycogen synthase kinase b (GSK3b) fromGolgi to the cytoplasm, thus activating the HDAC6-HSP90-AR pathway. The cover image showsthat the fluorescence signal of GSK3b (red) segregated from Golgi membranes (stained bygiantin, green) in the tissue section from a patient with prostate adenocarcinoma (Gleason 10).

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2019;17:1-334. Mol Cancer Res     17 (1)

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