Mining the Antibodypedia

30
Lars Juhl Jensen Mining the Antibodypedia Research barely in progress seminar

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Transcript of Mining the Antibodypedia

Page 1: Mining the Antibodypedia

Lars Juhl Jensen

Mining the Antibodypedia

Research barely in progress seminar

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web resource

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commercial antibodies

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Antibodypedia AB

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Nature Publishing Group

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query for a protein

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Creative Commons

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no download file

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web robot

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scraped all data

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mapped identifiers

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STRING

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579,038 antibodies

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16,827 human proteins

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variable quality

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rated for various uses

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Western blot

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ELISA

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immunoprecipitation

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immunoflourescence

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immunohistochemistry

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flow cytometry

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combine these ratings

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unified quality score

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quality scores

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Western blot

flow cytometry

immunoflourescence

immunohistochemistry

immunoprecipitation

ELISA

immunocytochemistry

protein array

gel shift

chromatin immunoprecipitation

proximity ligation assay

blocking/neutralizing

functional assay

radioimmunoassay

immunoelectron microscopy

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thank you!


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