Appendix E Published Reports

• Year 3 Annual Progress Report (June 26, 2006) • Year 2 Annual Progress Report (June 29, 2005) • Five-Yr Cooperative Plan (May 11, 2005) • Semi-Annual Progress Report (May 26, 2004) • Initial Report (February 11, 2004) • Memorandum of Agreement (December 23, 2003)

List of Publications (CIOSS Fellows in bold)

Peer Reviewed Publications by CIOSS Fellows (Publications supported by, or related to, CIOSS projects are shown with a double asterisk, **) 2006 Andersen, O. B., G. D. Egbert, S. Y. Erofeeva, and R. D. Ray, 2006. Mapping shallow water tides: a look at the past and future. Ocean Dynamics, in press. Anderson, B. T., and E. D. Maloney, 2006: Interannual Tropical Pacific Sea-Surface Temperatures and Their Relation to Preceding Sub-Tropical Sea Level Pressures in the NCAR CCSM2.0. J. Climate, 19, 998-1012. Balasis, G. and G. D. Egbert, 2006. Empirical orthogonal function analysis of magnetic observatory data: Further evidence for non-axisymmetric sources for satellite induction studies, Geophys. Res. Lett., in press. Benjamin, D., J. Wahr, R .D. Ray, G. D. Egbert, and S. Desai, 2006. Constraints on mantle anelasticity from geodetic observations and implications for the J2 anomaly, Geophys. J. Int., 165, 3-16. Bennett, A. F., 2006: Lagrangian Fluid Dynamics. Monographs on Mechanics, Cambridge University Press, Cambridge, 286 pp, ISBN-10: 0521853109. Bennett, A. F., B. S. Chua, H.-E. Ngodock, D. E. Harrison and M. J. McPhaden, 2006: Generalized inversion of the Gent-Cane model of the Tropical Pacific with Tropical Atmosphere-Ocean (TAO) data. Journal of Marine Research, 64:1, 1-42. Castelao, R. M. and J. A. Barth, 2006. The relative importance of wind strength and along-shelf bathymetric variations on the separation of a coastal upwelling jet. J. Phys.Oceanogr., 36, 412-425. Castelao, R. M. and J. A. Barth, 2006. Upwelling around Cabo Frio, Brazil: The importance of wind stress curl. Geophys. Res. Lett., 33, L03602, doi:10.1029/2005GL025182. ** Castelao, R. M., T. P. Mavor, J. A. Barth and L. C. Breaker, 2006. Sea-surface temperature fronts in the California Current System from geostationary satellite observations. J. Geophys. Res., submitted. ** Chelton, D. B., M. G. Schlax and R. M. Samelson, 2006. Summertime coupling between sea surface temperature and wind stress in the California Current System. J. Phys.Oceanogr., in press.

Chelton, D. B., M. G. Schlax, R. M. Samelson and R. A. de Szoeke, 2006: Global observations of westward energy propagation in the ocean: Rossby waves or nonlinear eddies? Science, submitted. ** Chelton, D. B., M. H. Freilich, J. M. Sienkiewicz, and J. M. Von Ahn, 2006: On the use of QuikSCAT scatterometer measurements of surface winds for marine weather prediction. Mon. Wea. Rev., 134, 2055-2071. Church, M. J., H. W. Ducklow, R. M. Letelier, and D. M. Karl, 2006. Temporal dynamics in heterotrophic picoplankton productivity in the subtropical North Pacific Ocean. Aquat. Microb. Ecol, accepted. Dale, A. C., M. D. Levine, J. A. Barth, and J. A. Austin, 2006. A dye tracer reveals cross-shelf dispersion and interleaving on the Oregon shelf. Geophys. Res. Lett., 33, L03604, doi:10.1029/2005GL024959. Durski, S., J. S. Allen, G. D. Egbert, and R. M. Samelson, 2006. Scale evolution of finite amplitude instabilities on a coastal upwelling front. J. Phys.Oceanogr., accepted. Egbert, G. D., 2006. Inverse modeling of EM, in Encyclopedia of Geomagnetism and Paleomagnetism, D. G. Gubbbins & E. Herrero-Bervera, Eds, in press. Egbert, G. D., 2006. Robust electromagnetic transfer function estimates, in Encyclopedia of Geomagnetism and Paleomagnetism, D. G. Gubbbins & E. Herrero-Bervera, Eds, in press. Everroad, C., C. Six, F. Partensky, J.-T. Thomas, J. Holzendorff, and A. M. Wood. 2006. Biochemical bases of Type IV chromatic adaptation in marine Synechococcus spp. J. Bacteriology, 188:3345-56. ** Freilich, M.H. and B.A. Vanhoff, 2006: The accuracy of preliminary Windsat vector wind measurements: Comparisons with NDBC buoys and QuikSCAT. IEEE Trans. Geosci. and Rem. Sens., 44, #3, doi 10.1109/TGRS.2006.869928 . ** Kosro, P.M., W.T. Peterson, B.M. Hickey, R.K. Shearman and S.D. Pierce. The physical vs. the biological spring transition: 2005. Geophysical Research Letters (submitted). Lermusiaux, P. F. J., C.-S. Chiu, G. G. Gawarkiewicz, P. Abbot, A. R. Robinson, R. N. Miller, P. J. Haley, W.G. Leslie, S. J. Majumdar, A. Pang and F. Lekien. 2006. Quantifying uncertainties in ocean predictions. Oceanography, 19, 90-103. Levin, J.C., D.B. Haidvogel, B. Chua, A.F. Bennett and M. Iskandarani, 2006: Euler–Lagrange equations for the spectral element shallow water system. Ocean Modelling, 12, 348-377.

Liu, J.-G., R. Samelson, and C. Wang, 2006. Global weak solutions of planetary geostrophic equations with inviscid geostrophic balance. Applicable Analysis, 85, 593-605, doi: 10.1080/00036810500328299. ** Mackas, D.L., P.T. Strub, A.C. Thomas and V. Montecino. 2006. Eastern ocean boundaries – pan regional overview. In: The Global Coastal Ocean: Interdisciplinary Regional Studies and Syntheses. The Sea, vol 14. Robinson, A. R., and K. H. Brink (eds.). Harvard University Press, Chapter 2. (in press) Maloney, E. D., and A. H. Sobel, 2006: Idealized hot spot experiments with a general circulation model. J. Climate, in press. Maloney, E. D., and D. B. Chelton, 2006: SST influence on surface wind stress in climate models. J. Climate, 19, 2743-2762. Maloney, E. D., and S. K. Esbensen, 2006: Satellite and Buoy Observations of Boreal Summer Intraseasonal Variability in the Tropical Northeast Pacific. Mon. Wea. Rev., in press. Matheson, M. A., J. A. Coakley, Jr., and W. R. Tahnk, 2006: Effects of threshold retrievals on estimates of the aerosol indirect radiative forcing, Geophys. Res. Lett., 33, L07705, doi:10.1029/2005GL025614. Matheson, M.A., J.A. Coakley, Jr., and W.R. Tahnk, 2006: Multiyear Advanced Very High Resolution Radiometer observations of summertime stratocumulus collocated with aerosols in the northeastern Atlantic. J. Geophys. Res., 111, D15206, doi:10.1029/2005JD006890. Miller, L. and B. C. Douglas, 2006. On the rate and causes of twentieth century sea-level rise. Phil. Trans. R. Soc. A, 364, 805-820, doi:10.1`098/rsta.2006.1738. Miller, R. N. 2006. "Numerical Modeling of Ocean Circulation" Cambridge University Press, in press. Miller, R. N. 2006. Topics in Data Assimilation : Stochastic Processes. Physica D, in press. ** Montecino, V., P.T. Strub, F. Chavez, A.C. Thomas, J. Tarazona, and T.R. Baumgartner. Bio-physical interactions off western South America, In: The Global Coastal Ocean: Interdisciplinary Regional Studies and Syntheses. The Sea, vol 14. Robinson, A. R., and K. H. Brink (eds.). Harvard University Press., Chapter 10 (in press). ** Perlin, N., E. D. Skyllingstad, R. M. Samelson, and P. L. Barbour, 2006. Numerical simulation of air-sea coupling during coastal upwelling. J. Phys. Ocean., submitted.

** Risien, C.M., D.B. Chelton, J.W. Good, and M.H. Freilich, 2006. A satellite-derived climatology of global ocean winds. Rem. Sens. Environ., 104, doi:10.1016/j.rse.2006.06.017. Samelson, R. M., E. D. Skyllingstad, D. B. Chelton, S. K. Esbensen, L. W. O'Neill, and N. Thum, 2006. A note on the coupling of wind stress and sea surface temperature. J. Climate, 19, 1557–1566. Samelson, R. M., and S. Wiggins. 2006. Lagrangian Transport in Geophysical Jets and Waves. Springer-Verlag, New York, 147 pp. Samelson, R. M., T. Agnew, H. Melling, and A. Münchow, 2006. Evidence for atmospheric control of sea-ice motion through Nares Strait. Geophys. Res. Lett., 33, L02506, doi:10.1029/2005GL025016. Skyllingstad, E., D. Vickers, L. Mahrt, and R. Samelson. Effects of mesoscale sea-surface temperature fronts on the marine boundary layer. Boundary Layer Meteorology, accepted. ** Strub, P.T., C. James and R. Venegas, Satellite estimates of SST, wind and transport anomalies during the spring-summer 2005 “Warm Event” in the northern California Current. Geophys. Res. Lett. (submitted). Vernieres, G. and R. N. Miller. 2006. Generalized Inversion of Thermistor-Chain data and a Layer Model of Lake Kinneret. Ocean Modelling, 12, 112-139 doi:10.1016/j.ocemod.2005.04.004 White, A. E., Y. Spitz, D. M. Karl, and R. M. Letelier, 2006. Ecological implications of flexible elemental stoichiometry in Trichodesmium spp. Limnol. Oceanogr, in press. White, A. E., Y. H. Spitz, and R. M. Letelier, 2006. Modeling carbohydrate ballasting by Trichodesmium spp. at Station ALOHA. Mar. Ecol. Prog. Ser, accepted. Wolfe, C. L., and R. M. Samelson, 2006. Normal-mode analysis of a baroclinic wave-mean oscillation. J. Atmos. Sc., accepted. Wolfe, C. L., and R. M. Samelson. 2006. Recovering Lyapunov vectors from singular vectors. Tellus, submitted. Zaron, E. D., and G. D. Egbert, 2006. Estimating Open-Ocean Barotropic Tidal Dissipation: The Hawaiian Ridge, J. Phys. Ocean., in press. Zaron, E. D., and G. D. Egbert, 2006. Verification studies for a Z-coordinate primitive equation model: tidal conversion at a mid-ocean ridge, Ocean Modeling, submitted.

Zhang, C., M. Dong, H. H. Hendon, E. D. Maloney, A. Marshall, K. R. Sperber, and W. Wang, 2006: Simulations of the Madden-Julian oscillation in four pairs of coupled and uncoupled models. Clim Dyn., in press. 2005 Ainley, D. G., Spear, L. B., Tynan, C. T., Barth, J. A., Pierce, S. D., Ford, R. G. and Cowles, T. J., 2005, Physical and biological variables affecting seabird distributions during the upwelling season of the northern California Current: Deep-Sea Res. II, v. 52, p. 123-143. Bane, J. M., Levine, M. D., Samelson, R. M., Haines, S. M., Meaux, M. F., Perlin, N., Kosro, P. M. and Boyd, T., 2005, Atmospheric forcing of the Oregon coastal ocean during the 2001 upwelling season: J. Geophys. Res. - Oceans, v. 110, C10S02, doi:10.1029/2004JC002653. Barth, J. A., Pierce, S. D. and Castelao, R. M., 2005, Time-dependent, wind-driven flow over a shallow midshelf submarine bank: J. Geophys. Res., v. 110, C10S05, doi:10.1029/2004JC002761. Barth, J. A, Pierce, S. D. and Cowles, T. J., 2005, Mesoscale structure and its seasonal evolution in the Northern California Current System: Deep-Sea Res. II, v. 52, p. 5-28. Barth, J. A. and Wheeler, P. A., 2005, The coastal ocean advances in shelf transport (COAST) project: Motivation and Overview: J. Geophys. Res., v. 110: C10S01, doi:10.1029/2005JC003124. ** Batchelder, H. P., Strub, P. T., Lessard, E. J. and Weingartner, T. J., 2005, U.S. GLOBEC biological and physical studies of plankton, fish and higher trophic level production, distribution, and variability in the Northeast Pacific: Deep-Sea Res. II, v. 52, doi:10.1016/j.dsr2.2004.10.001. Bennett, A. F., Taylor, J. R. and Chua, B. S., 2005, Lattice Boltzmann open boundaries for hydrodynamic models: Jour. Computational Physics, v. 203, p. 89-111. Bogucki, D. J., Redekopp, L. G. and Barth, J., 2005, Internal solitary waves in the Coastal Mixing and Optics experiment 1996: Multimodal structure and resuspension: J. Geophys. Res., v. 110, C02024, doi:10.1029/2003JC002253. Castelao, R. M. and Barth, J. A., 2005, Coastal ocean response to summer upwelling favorable winds in a region of alongshore bottom topography variations off Oregon : J. Geophys. Res., v. 110, C10S04, doi:10.1029/2004JC002409.

** Castelao, R. M., Barth, J. A. and Mavor, T. P., 2005, Flow-topography interactions in the northern California Current System observed from geostationary satellite data: Geophys. Res. Lett., v. 32, L24612, doi:10.1029/2005GL024401. ** Chelton, D. B., 2005, The impact of SST specification on ECMWF surface wind stress fields in the eastern tropical Pacific: J. Climate, v. 18, p. 530-550. Chelton, D. B. and Freilich, M. H., 2005, Scatterometer-based assessment of 10-m wind analyses from the operational ECMWF and NCEP numerical weather prediction models: Mon. Wea. Rev., v. 133, p. 409-429. ** Chelton, D. B. and Wentz, F. J., 2005, Global High-Resolution Satellite Observations of Sea-Surface Temperature for Numerical Weather Prediction and Climate Research: Bull. Amer. Meteor. Soc., v. 86, p. 1,097-1,115. ** Choboter, P. F., Samelson, R. M. and Allen, J. S., 2005, A new solution of a nonlinear model of upwelling: J. Phys. Oc., v. 35, p. 532-544. Coakley, J., 2005, Reflections on aerosol cooling: Nature, v. 438, p. 1,091-1,092. Coakley, J. A., Jr., Friedman, M. A. and Tahnk, W. R., 2005, Retrieval of cloud properties for partly cloudy imager pixels: J. Atmos. Ocean. Tech., v. 22, p. 3-17. Corno, G., Letelier, R. M., Abbott, M. R. and Karl, D. M., 2005, Assessing primary production variability in the North Pacific subtropical gyre: A comparison of Fast Repetition Rate fluorometry and 14 C measurements: J. Phycol., v. 42, p. 51-60. Dewar, W. K., Samelson, R. M. and Vallis, G. K., 2005, The ventilated pool: A model of subtropical mode water: J. Phys. Oc., v. 35, p. 137-150. Erofeeva S. Y., Padman, L., and Egbert, G., 2005, Assimilation of Ship-Mounted ADCP Data for Barotropic Tides: Application to the Ross Sea :, J. Atmos. Oceanic Technol., v. 22(6), p. 721-734. Gan, J., Allen, J. S. and Samelson, R. M., 2005, On open boundary conditions for a limited-area coastal model off Oregon . Part II: Response to wind forcing from a regional mesoscale atmospheric model: Ocean Modelling, v. 8, p. 155-173, 10.1016/j.ocemod.2003.12.007. Giovannoni, S. J., Bibbs, L., Choi, J.-C., Stapels, M. D., Desiderio, R., Vergin, K. L., Rappe, M. S., Laney, S. , Wilhelm, L. J., Tripp, H. J., Mathur, E. J., and Barofsky, D. F., 2005, Proteorhodopsin in the ubiquitous marine bacterium SAR11: Nature, v. 438, p. 82-85. Gochis, D. J., Maloney, E. D. and others, 2005, Future scientific directions: The water cycle across scales: Bull Amer. Meteor. Soc., v. 86, p. 1,743-1,746.

Guo, G., Ji, Q., Yang, P. and Tsay, S.-C., 2005, Remote sensing of cirrus optical and microphysical properties from ground –based infrared radiometric measurements-part II: re trievals from CRYSTAL-FACE measurements: IEEE Transactions on Geoscience and Remote Sensing letters , v. 2, p. 132-135. Huyer, A., Fleischbein, J. H., Keister, J. E., Kosro, P. M., Perlin, N., Smith, R. L. and Wheeler, P. A., 2005, Two coastal upwelling domains in the Northern California Current System: Jour. Mar. Res., v. 63, p. 901-929. Ignatov, A., P. Minnis, N. Loeb, B. Wielicki, W. Miller, S. Sun-Mack, D. Tanre, L. Remer, I. Laszlo, and E. Geier, 2005: Two Aerosol Products on the Terra and Aqua CERES SSF Datasets. J.Atm.Sci., 62, , 1008-1031. Kirincich, A. R., Barth, J. A., Grantham, B. A., Menge, B. A. and Lubchenco, J., 2005, Wind-driven inner-shelf circulation off central Oregon during summer: J. Geophys. Res., v. 110(C10), C10S03, doi:10.1029/2004JC002611. Kurapov, A. L., Allen, J. S., Egbert, G. D. and Miller , R. N., 2005, Modeling Bottom Mixed Layer Variability on the Mid-Oregon Shelf during Summer Upwelling: J. Phys. Oceanogr., v. 35, p. 1 , 629-1 , 649. Kurapov, A. L., Allen, J. S., Egbert, G. D., Miller, R. N., Kosro, P. M., Levine, M., Boyd, T., Barth, J. A. and Moum, J., 2005, Assimilation of moored velocity data in a model of coastal wind-driven circulation off Oregon: Multivariate capabilities: J. Geophys. Res., v. 110, C10S08, doi:10.1029/2004JC002493. Kurapov, A. L., Allen, J. S., Egbert, G. D., Miller, R. N., Kosro, P. M., M. Levine, and T. Boyd, 2005: Distant effect of assimilation of moored ADP currents into a model of coastal wind-driven circulation off Oregon, J. Geophys. Res., 110, C02022, doi:10.1029/2003JC002195. Lancelot, C., Spitz, Y. H., Gypens, N., Ruddick, K., Becquevort, S., Rousseau, V. and Billen, G., 2005, Modeling diatom- Phaeocystis blooms and nutrient cycles in the Southern Bight of the North Sea with focus on the Belgian coastal zone: the MIRO model: Mar. Ecol. Progress Ser., v. 289, p. 63-78. Laney, S. R., 2005, A generalized real-time signal processor for oceanographic applications: Research Papers of the Link Foundation Fellows, Vol. 4, B. J. Thompson, ed., p. 333-349. Laney, S. R., Letelier, R. M. and Abbott, M. R., 2005, Parameterizing the natural fluorescence kinetics of Thalassiosira weissflogii: Limnol. Oceanogr. , v. 50(5), p. 1,499-1,510.

Lee, Z. P., Darecki, M., Carder, K. L., Davis, C. O., Stramski, D. and Rhea, W. J., 2005, Diffuse attenuation coefficient of downwelling irradiance: An evaluation of remote sensing methods: J. Geophys. Res., v. 110: C02017. Li, M., Garrett, C. and Skyllingstad, E. D., 2005, A regime diagram for classifying large eddies in the turbulent ocean: Deep Sea Res. I, v. 52, p. 259-278. Luderer, G., Coakley, J. A., Jr. and Tahnk, W. R., 2005, Using sun glint to check the relative calibration of reflected spectral radiances: J. Atmos. Ocean. Tech., v. 22, p. 1,480-1,493. Lyman, J. M., Chelton, D. B., de Szoeke, R. A. and Samelson, R. M., 2005, Tropical instability waves as a resonance between equatorial Rossby waves: J. Phys. Oceanogr., v. 35, p. 232-254. Maloney, E. D. and Esbensen, S. K., 2005, A modeling study of summertime east Pacific wind-induced ocean-atmosphere exchange in the intraseasonal oscillation: J. Climate, v. 18, p. 568-584. Matheson, M. A., Coakley, J. A., Jr. and Tahnk, W. R., 2005, Aerosol and cloud property relationships for summertime stratiform clouds in the northeastern Atlantic from Advanced Very High Resolution Radiometer observations: J. Geophys. Res., v. 110, D24204, doi:10.1029/2005JD006165. Medeiros, P. M., Bicego, M. C., Castelao, R. M., Delrosso, C., Fillmann, G. and Zamboni, A., 2005, Natural and anthropogenic hydrocarbon inputs to sediments of Patos Lagoon estuary, Brazil : Environment International, v. 31, p. 77-87. Miller, S. R., S. Augustine, T. L. Olson, R. E. Blankenship, J. Selker, A. M. Wood, 2005, Discovery of a free-living chlorophyll d-producing cyanobacterium with a hybrid proteobacterial/cyanobacterial small-subunit rRNA gene. PNAS 102 (3): 850-855. Mobley, C. D., Sundman, L. K., Davis , C. O., Downes, T. V., Leathers, R. A., Montes, M. J. and Bowles, J. H., Bissett, W. P., Kohler, D. D. R., Reid, R. P., Louchard, E. M. and Gleason, A., 2005, Interpretation of hyperspectral remote-sensing imagery via spectrum matching and look-up tables: Applied Optics, v. 44(17), p. 3,576-3,592. O'Neill, L. W., Chelton, D. B., Esbensen, S. K. and Wentz, F. J., 2005, High-resolution satellite measurements of the atmospheric boundary layer response to SST variations along the Agulhas Return Current: J. Climate, v. 18, p. 2,706-2,723. Perez, R. C., Chelton, D. B. and Miller, R. N., 2005, The effects of wind forcing and background mean currents on the latitudinal structure of equatorial Rossby waves: J. Phys. Oceanogr., v. 35, p. 666-682.

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Non-Peer Reviewed Publications and Abstracts by CIOSS Fellows 2006 Bane, J.M., Y. Spitz and R. Letelier, 2006. “Atmospheric Intraseasonal Oscillations and Their Impact on the Oregon Coastal Upwelling System: From the Jet Stream to Zoo-plankton”, Eos Trans. AGU, 87(36), Ocean Sci. Meet. Suppl., Abstract OS32N-03. ** Castelao, R. M., Coastal ocean response to topographic effects and spatial variability in the wind forcing. PhD thesis, to be defended on June 2, 2006. Geier, S. L., B. M. Hickey, S. R. Ramp, P. M. Kosro, N.B. Kachel, F. Bahr, 2006. “Interannual Variability in Water Properties and Velocity in the U.S. Pacific Northwest Coastal Zone”, Eos Trans. AGU, 87(36), Ocean Sci. Meet. Suppl., Abstract OS36D-23. Kosro, P. M., 2006. “Charting the time-varying surface circulation off Oregon”, Eos Trans. AGU, 87(36), Ocean Sci. Meet. Suppl., Abstract OS23B-05. Laney, S. R., Seconds to minutes photosynthetic responses in marine microalgae. PhD thesis, to be defended Summer term, 2006. ** Risien, C. M., A Satellite-Derived Climatology of Global Ocean Winds. MS thesis, defended on January 26, 2006. ** Saraceno, M., P. T. Strub, C. James and R. Venegas, 2006. Mesoscale interannual variability off the Oregon coast based on satellite data. EGU General Assembly 2006. Smith, R.L., J. H. Fleischbein, A. Huyer and P. M. Kosro, 2006. “Ocean Climate Change off Oregon: A Comparison of Two Epochs”, submitted for the symposium “Time Series of the Northeast Pacific: A Symposium to mark the 50th anniversary of Line-P”, Victoria, B.C., July 8-10, 2006. ** Strub, P. T., 2006. Eddy-mediated transport along eastern boundaries, Proceedings from OSTST Meeting in Venice, Italy 2006. ** Vandehey, A., P. T. Strub, and M. Phipps, 2006. Outreach at the Cooperative Institute for Oceanographic Satellite Studies, Proceedings from OSTST Meeting in Venice, Italy 2006. 2005 Anderson, B. A., and E. D. Maloney, 2005: Interannual tropical Pacific sea-surface temperatures and preceding subtropical sea level pressure anomalies in the NCAR CCSM2.0. Preprints, AMS Annual Meeting, 16th Conference on Climate Variability and Change, January 9-13, 2005, San Diego, California.

** Bower, P., Wright, D. J., and Feldburg, M., 2005. Using Internet Map Services (IMS) and coastal remote sensing for education, Abstract accepted for Proceedings of Coastal GeoTools 2005, Myrtle Beach, SC, http://www.csc.noaa.gov/geotools/ , in press. ** Davis, C. O., 2005, The GOES-R Coastal Waters Imager; a new capability for Monitoring the Coastal Ocean : Proceedings of the SPIE V. 5882, 0K1-8. Fleischbein, J., Huyer, A., Kosro, P. M., Smith, R. L., Wetz, Jennifer Jarrell and Wheeler, P. A., 2005, Upper Ocean Water Properties and Currents along Paired Sections in the Northern California Current, Spring 1998-2003 . College of Oceanic and Atmospheric Sciences, Oregon State University, Data Report 203, Reference 2005-6. Fleischbein, J., Huyer, A., Kosro, P. M., Smith, R. L. and Wheeler, P. A., 2005, Upper ocean water properties and currents along paired sections in the northern California Current Summer 1998-2003. College of Oceanic and Atmospheric Sciences, Oregon State University, Data Report 201, Reference 2005-4. Fleischbein, J., Huyer, A., Smith, R. L. and Kosro, P. M., 2005, Hydrographic Data from the GLOBEC Long-Term Observation Program off Oregon, 2004 . College of Oceanic and Atmospheric Sciences, Oregon State University, Data Report 200, Reference 2005-3. Goldfinger, C., Nelson, C. H., Johnson, J. E., Chaytor, J., Ericsson, D., Karabanov, E., Morey Ross, A. and the 37 member Shipboard Scientific Party, 2004, A Possible Long-Term Paleoseismic Earthquake Record Along the Northern San Andreas Fault Based on Turbidite Stratigraphy, U.S.G.S. Workshop on San Andreas Fault Seismicity, January, 2005. Goldfinger, C., Nelson, C. H., Johnson, J. E., Chaytor, J., Ericsson, D., Karabanov, E., Morey Ross, A. and the 37 member Shipboard Scientific Party, 2005, Correlation of Long-Term Paleoseismic Earthquake Records Along the Cascadia Subduction Zone and Northern San Andreas Fault Based on Turbidite Stratigraphy, Hokudan International Symposium on Active Faulting, Hokudan Japan, January 2005. Goldfinger, C., Yoklavich, M., Wakefield, W., Romsos, C., Chaytor, J., Huffnagle, L. and Amend, M., 2005, Multibeam Sonar Surveys and Geological Habitat Mapping Within the Cowcod Conservation Area (CCA), Southern California Continental Borderland: GEOHAB International Conference, May 2005, Victoria B.C. ** Haddad, T.C., Wright, D.J., Dailey, M., Klarin, P., Marra, J., Dana, R., and Revell, D., 2005. The tools of the Oregon Coastal Atlas, in Wright, D.J. and Scholz, A.J. (Eds.), Place Matters: Geospatial Tools for Marine Science, Conservation and Management in the Pacific Northwest, Corvallis, OR: Oregon State University Press, 134-151.

** Lanier, A., Goldfinger, C., Romsos, C. and Wakefield, W., 2005, Surficial Geological Habitat Map of the Oregon and Washington Continental Margin, 2nd Edition: GEOHAB International Conference, May 2005, Victoria B.C. Maloney, E. D., and S. K. Esbensen, 2005: An observational study of east Pacific intraseasonal variability during boreal summer. Eos Trans. AGU, 86(52), Fall Meet. Suppl., Abstract A53B-02. Miller, S.M., S. Augustine, R. Blankenship, T. Olsen, J. Selker, and A. M. Wood. 2005. New free-living chlorophyll d-containing picocyanobacterium with a hybrid cyanobacterial-proteobacterial 16S rRNA gene. Proceedings of the National Academy of Sciences. 102(3):850-5. Skyllingstad, E. D. and Paulson, C., 2005, Heat transfer in melt ponds: in Proceedings of the Eighth Conference on Polar Meteorology and Oceanography, San Diego, CA. 2004 Goldfinger C., Romsos, C., Robison, R., Milstein, R., Wakefield, W., 2004, Active Tectonics and Seafloor Mapping Laboratory Publication 03-01: Seafloor Lithology Maps for Oregon and Washington Version 1.1. 1 CD containing GIS layers and text report. Good, J. W., 2004, The diffusion of innovations in coastal management: Proceedings of The Coastal Society Conference, TCS 19, Newport, RI. ** Haddad, T., Dailey, M., and Wright, D., 2004. The Oregon Coastal Atlas; A Pacific Northwest coastal information management system, Proceedings of the National Conference on Digital Government Research, Seattle, WA, 310-311. Ignatov, A., and I. Laszlo, 2004: Equator crossing times for NOAA satellites. SPIE 4th Intn’l Asia-Pacific Env. Remote Sens. Symp. “Remote Sensing of the Atmosphere, Ocean, Environment, and Space”, 8-12 Nov, 2004, Honolulu, HI. Proc SPIE, vol.5658, 11-19. Ignatov, A., C. Cao, J. Sullivan, R. Levin, X. Wu, and R. Galvin, 2004: In-flight measurements of space count in the AVHRR solar reflectance bands. SPIE 4th Intn’l Asia-Pacific Env. Remote Sens. Symp. “Remote Sensing of the Atmosphere, Ocean, Environment, and Space”, 8-12 Nov, 2004, Honolulu, HI. Proc SPIE, vol.5652, 89-98. Ignatov, A., J. Sapper, W. Pichel, E. Maturi, A. Harris, A. Strong, E. Bayler, I. Laszlo, N. Nalli and X. Li, 2004: Global diagnostics of operational AVHRR SST and aerosol retrievals from NOAA-16 and NOAA-17. SPIE 4th Intn’l Asia-Pacific Env. Remote Sens. Symp. “Remote Sensing of the Atmosphere, Ocean, Environment, and Space”, 8-12 Nov, 2004, Honolulu, HI. Proc SPIE, vol.5658, 245-256.

Ignatov, A., P. Minnis, B. Wielicki, N. Loeb, L. Remer, Y. Kaufman, W. Miller, S. Sun-Mack, I. Laszlo, and E. Geier. 2004: Consistency of two MODIS aerosol products over ocean on Terra and Aqua CERES SSF datasets. SPIE 4th Intn’l Asia-Pacific Env. Remote Sens. Symp. “Remote Sensing of the Atmosphere, Ocean, Environment, and Space”, 8-12 Nov, 2004, Honolulu, HI. Proc SPIE, vol.5658, 206-215. Maloney, E. D., 2004: A GCM Study of tropical eastern north Pacific wind-induced ocean-atmosphere exchange during intraseasonal oscillation events. Abstracts, 1st International CLIVAR Science Conference, June 21-25, 2004, Baltimore, MD. Maloney, E. D., 2004: The influence of wind-induced atmosphere-ocean exchange on summertime east Pacific intraseasonal oscillations in the modified NCAR CAM2.0.1. Preprints, 26th Conference on Hurricanes and Tropical Meteorology, May 3-7, 2004, Miami, Florida. Maloney, E. D., and A. H. Sobel, 2004: Ocean-atmosphere interaction and intraseasonal oscillations in the modified CAM2.0.1 coupled to slab oceans of varying depths. Preprints, 26th Conference on Hurricanes and Tropical Meteorology, May 3-7, 2004, Miami, Florida. Maloney, E. D., and A. H. Sobel, 2004: Surface Fluxes and Ocean Coupling in the Tropical Intraseasonal Oscillation. Abstracts, 2004 Western Pacific Geophysics Meeting, August 16-20, 2004, Honolulu, Hawaii. Maloney, E. D., and A. H. Sobel, 2004: The dependence of intraseasonal variability on mixed layer depth in an AGCM coupled to a slab ocean. Preprints, AMS Annual Meeting, 15th Symposium on Global Change and Climate Variations, January 11-15, 2004, Seattle, Washington. O'Malley, R. and Barth, J. A., 2004, SeaSoar Observations during the GLOBEC NEP California Current Survey IV (R0208) 31 July - 19 August 2002, College of Oceanic and Atmospheric Sciences, Oregon State University, Corvallis, OR, Data Rep. 195, Ref. 2004-3, 345 p. O'Malley, R. , Cowles, T. J. and Barth, J. A., 2004, SeaSoar Observations during the GLOBEC NEP California Current Survey III (T0205) 31 May - 17 June 2002, College of Oceanic and Atmospheric Sciences, Oregon State University, Corvallis, OR, Data Rep. 196, Ref. 2004-4, 395 p. ** Romsos, C., Goldfinger C., Robison, R., 2004, Development of a Regional Seafloor Surficial Geologic (Habitat) Map for the Continental Margin of Oregon, 13th Western Groundfish Conference Proceedings, February, 2004, Victoria, BC, p. 142. ** Romsos, C., Goldfinger C., Robison, R., Chaytor, J., 2004, An indirect assessment of thematic accuracy in the geologic habitat maps of Oregon and Washington, 13th Western Groundfish Conference Proceedings, February, 2004, Victoria, BC, p. 143.

Skyllingstad, E. D., 2004, The effects of Langmuir circulation on buoyant particles, in: Handbook of Scaling Methods in Aquatic Ecology: Measurement, Analysis, Simulation, Seurant, L. and Strutton, P., editors, CRC Press, Boca Raton, FL. ** Strub, P. T. and Thomas, A. C., 2004, Anticyclonic eddies in the Alaska Gyre (and Cape Horn Current?), Proceedings of the PORSEC-2004 Symposium, in Gayana , International Journal of Biodiversity, Oceanology and Conservation, Universidad de Concepcion Press, Concepcion, Chile. Wright, D., Haddad, T., Klarin, P., Dana, R., and Dailey, M., 2004. Infrastructure for data sharing, spatial analysis, resource decision-making, and societal impact: The Oregon Coastal Atlas, Proceedings of the National Conference on Digital Government Research, Seattle, WA, 131-132. Zhang, C., W. Forsee, M. Dong, H. Hendon, A. Marshall, E. Maloney, K. Sperber, and W. Wang, 2004: Simulations of the Madden-Julian oscillation by global models: Current status. Abstracts, 2004 Western Pacific Geophysics Meeting, August 16-20, 2004, Honolulu, Hawaii.

2003 Barth, J. A., O'Malley, R. and Erofeev, A. Y., 2003, SeaSoar observations during the Coastal Ocean Advances in Shelf Transport (COAST) Survey I, W0105C, 23 May - 13 June 2001, College of Oceanic and Atmospheric Sciences, Oregon State Univ., Corvallis, OR, Data Rep. 191, Ref. 2003-1, 678 p. Chelton, D. B., 2003: Sea surface temperature modification of low-level winds. ECMWF Workshop on the Role of the Upper Ocean in Medium and Extended Range Forecasting, edited by D. L. T. Anderson, pp. 115-128. Goldfinger, C., Nelson, C. H., Ericksson, D., Karabonov, E., Johnson, J., 2003, Marine records of earthquakes along the San Andreas and Cascadia margins, Recent Advances in Earthquake Research and Probability Assessment, 3 February 2003 XL Conference Centre, Hamilton, Bermuda. Proceedings available at: http://www.bbsr.edu/rpi/. Goldfinger, C., Romsos, C., Robison, R., Milstein, R. and Myers, S. A., 2003, Seafloor Lithology Maps for Oregon And Washington, Version 1.1 Oregon State University Active Tectonics and Seafloor Mapping Laboratory Publication 03-01, 1 digital multilayer map on CD, and text, 25 p. Howe, B. M., Baptista, A. M., Barth, J. A., Davis, E. E., Horne, J. K., Juniper, S. K., Letelier, R. M., Moore, S. E., Parsons, J. D., Toomey, D. R., Trehu, A. M., Torres, M. E. and Penrose, N. L., 2003, Report of the NEPTUNE Pacific Northwest Workshop, Portland State University, Portland, Oregon, 72 p., http://www.neptune.washington.edu/documents Skyllingstad, E. D., Paulson, C. and Pegau, S., 2003, Large-eddy simulation of turbulent processes in summertime leads, In Proceedings of the Seventh Polar Conference and Joint Symposium on High-Latitude Climate Variations, Hyannis, MA. Wright, D.J., 2003. Internet GIS at Oregon State University, in Peng, Z.R. and Tsou, M.H., Internet GIS: A Distributed Geospatial Information Service for Wired and Wireless Networks, New York: John Wiley and Sons, 198-199.