Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of...

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Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Transcript of Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of...

Page 1: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Lisa J. FauciTulane University, Math Dept.New Orleans, Louisiana, USA

Calcium-driven dynamics of undulatoryswimmers: a tale of two Reynolds numbers.

Page 2: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

(Undulatory) Collaborators:Avis Cohen University of Maryland, Biology

Eric Tytell Tufts University, Biology

Chia-yu Hsu National Taiwan University

Thelma Williams St. George’s Univ. of London, Basic Medical Sciences Phillip Holmes Princeton University, Mathematics

Lex Smits Princeton University, Mechanical Engr.

Megan Leftwich George Washington University, Mechanical Engr.

Sarah Olson Tulane/WPI, Mathematics

Susan Suarez Cornell University, Veterinary Sciences

Page 3: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Today’s cast of characters

• Mammalian spermatozoa (Re 10 -2)

• Lamprey (Re 103)

Page 4: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Neuroscience: How does the nervous system create a complete behavior

(i.e. swimming)?

Page 5: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

How is force generated to produceswimming?

Page 6: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Free swimming of lamprey

Page 7: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

University of Chicago 3/27/07

Sensory system

Fluid Dynamics

Musculature

Neuronal network

Page 8: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

University of Chicago 3/27/07

Fluid Dynamics

Musculature

Neuronal network

Page 9: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Neural activation and fictive swimming in lamprey

The central pattern generator (CPG) of lamprey is a series of ipsi- and contralaterally coupled neural oscillators distributed along the spinal notocord. In “fictive swimming” in vitro, contralateral motoneurons burst in antiphase and there is a phase lag along the cord from head to tail corresponding to about one full wavelength, at the typical 1-2 Hz burst frequency. This has been modeled as a chain of coupled oscillators. The model can be justified by phase response and averaging theory:

[Cohen, Holmes, Rand, J. Math Biol. 13, 345-369, 1982]

From Fish and Wildlife.

Page 10: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Neural activation and fictive swimming in lamprey

From Fish and Wildlife.

R7

L7R17

L17

Page 11: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Methods

Avis Cohen andEric Tytell, UMD

Page 12: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Ichthyomyzon unicuspis (silver lamprey) + host (trout). Photo: Avis Cohen. .

Page 13: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

• In lamprey and many other fish, the wave of electrical activation travels faster than the observed mechanical wave.

Williams , J. Exp. Biol., 1989

Grillner, Exp. Brain Res., 1974

Wardle, Videler, Altringham, J. Exp. Biol., 1995

Page 14: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Action potential bursts -

Calcium release from SR –

Calcium binds to the muscle filaments , causing conformational changes in thick filaments which form cross bridges – force is generated .

Calcium then resequestered by SR, and muscle relaxes.

Output of CPG

Ultrastructure of vertebrate skeletal muscle

Page 15: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Action potential bursts -

Calcium release from SR –

Calcium binds to the muscle filaments , causing conformational changes in thick filaments which form cross bridges – force is generated .

Calcium then resequestered by SR, and muscle relaxes.

Output of CPG

Ultrastructure of vertebrate skeletal muscle

Page 16: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Action potential bursts -

Calcium release from SR –

Calcium binds to the muscle filaments , causing conformational changes in thick filaments which form cross bridges – force is generated .

Calcium then resequestered by SR, and muscle relaxes.

Output of CPG

Ultrastructure of vertebrate skeletal muscle

Page 17: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Action potential bursts -

Calcium release from SR –

Calcium binds to the muscle filaments , causing conformational changes in thick filaments which form cross bridges – force is generated .

Calcium then resequestered by SR, and muscle relaxes.

Output of CPG

Ultrastructure of vertebrate skeletal muscle

Page 18: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

d[c]/dt = k1[cs] - k2[c][s] - k3[c][f] d[cf]/dt = k3[c][f] - k4[cf][f]

d[cs]/dt = -k1[cs] + k2[c][s] d[f]/dt = -k3[c][f] + k4[cf][f]

d[s]/dt = k1[cs] - k2[c][s]

While the stimulus is on, k2=0; While the stimulus is off, k1=0.

Mass action equations

[c] : unbound calcium[cs]: calcium bound SR sites[s]: unbound SR sites[f]: unbound filament sites[cf]: calcium bound filament sites

Page 19: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

From motoneurons to muscles via calcium dynamics

The Hill muscle model produces forces according to

This model is a modified version of that fitted to single myotome data; it incorporates nonlinear length and velocity dependence.

[Williams, Bowtell & Curtin, J. Exp. Biol. 201, 869-875, 1998]

Page 20: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Lamprey anatomy: spinal cord and muscles

[Peters & MacKay, J. Anatomy 95 (4), 575-585, 1961.]

We replace the multiscale biological complexity of actin, myosin, crossbridges, etc. by simple discretized dampers, springs, and active force generators based on A.V. Hill’s muscle model (1938).

Page 21: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Illustration of the simplified lamprey model structure

• Some muscle segments on either side are shown in red.

McMillen and Holmes, Mathematical Biology,53:843-886, 2006

McMillen, Williams and Holmes, PLOS Computational Biology,1-16,2008

Page 22: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Can we build a ‘compu-lamprey’?

Page 23: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Can we build a ‘compu-lamprey’?

1. Takes a wave of action potential as input and…

Page 24: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Can we build a ‘compu-lamprey’?

1. Takes a wave of action potential as input and…

2. Generates realistic muscle forces from this input and…

Page 25: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Can we build a ‘compu-lamprey’?

1. Takes a wave of action potential as input and…

2. Generates realistic muscle forces from this input and…

3. Reflects passive elastic properties of real lamprey and...

Page 26: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Can we build a ‘compu-lamprey’?

1. Takes a wave of action potential as input and…

2. Generates realistic muscle forces from this input and…

3. Reflects passive elastic properties of real lamprey and...

4. Swims?

Page 27: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Body plan.

Lamprey built out of three filaments, with points connected by springs. Each spring has a particularrestlength.

How does this translate to macroscopic bend modulus?

Lim and Peskin, 2004

Page 28: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Energy= .5 A κ2 L

Page 29: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

What are the forces exerted by model lamprey?

• Passive elastic forces (linear springs).

• Active muscle contraction forces.

• May include muscle damping forces.

Page 30: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

What are the forces exerted by model lamprey?

• Passive elastic forces (linear springs).

• Active muscle contraction forces.

• May include muscle damping forces.

A system of ODE’s governing calciumdynamics and muscle forces are solved on each muscle segment!!!

Page 31: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 32: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Re (body) = 7900Re (tail) = 127St = .65Wave/Activation speed = .88Swimming speed/mech wavespeed = .65

Page 33: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Solver: IBAMR • Grid-refinement monitors locations of immersed

boundaries and regions of high vorticity.

B.Griffith, et.al J.Comp.Physics 223,10-49, 2007, www.math.nyu.edu/~griffith/

Page 34: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 35: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Re (body) = 7900Re (tail) = 127St = .65Wave/Activation speed = .88Swimming speed/mech wavespeed = .65

Page 36: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Red: muscle forceBlack: muscle length

Page 37: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Twice as stiff, twice as strong

Page 38: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Half as stiff, half as strong

Page 39: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Floppy swimmer

Negative work -- muscle segment lengthening when

muscle is activated.

Page 40: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 41: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Stiff-bodied swimmer accelerates faster.

Floppy-bodied swimmer uses less energyduring steady swimming.

Page 42: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Faster activation speed--1.5 Hz

Page 43: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Tytell and Lauder,J. Exp. Biology,2004“The hydrodynamics ofeel swimming: wakestructure”

Page 44: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Hultmark, Leftwich, Smits: Exper. In Fluids, 2007.Tytell, Lauder: J. Exp. Biol., 2004Tytell, Hsu, Cohen, Williams, Fauci: PNAS, 2010

Page 45: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Even faster activation speed—2.0 Hz

Page 46: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Swimming in different viscosity

Water

More viscous than water…

Courtesy of Eric Tytell

Page 47: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Swimming in different viscosity

Water

10X more viscous than water…

Page 48: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Turning (muscles on one side stronger – then switched)

Page 49: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Observations

• Wake structure is a function of model parameters.

• Sensory feedback not necessary for phase-lag between activation/curvature.

Page 50: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 51: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 52: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 53: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 54: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 55: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 56: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 57: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 58: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 59: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 60: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 61: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 62: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 63: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 64: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 65: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Olson, Suarez, Fauci: J. Theor. Biol. 2011

Page 66: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

Olson, Suarez, Fauci, J. Theor. Biology, 283(2011)203–216

Page 67: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 68: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 69: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.
Page 70: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.

CASA – computer-aided sperm analysis.VAP - average path velocity

Page 71: Lisa J. Fauci Tulane University, Math Dept. New Orleans, Louisiana, USA Calcium-driven dynamics of undulatory swimmers: a tale of two Reynolds numbers.