Detecting HGT: unlikely presence/absence
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Detecting HGT: unlikely presence/absence HGT only Loss only (Koonin, 2003) Ex: glycerol-3-P DH OEB 192 – 11.09.1
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Detecting HGT: unlikely presence/absence. Ex: glycerol-3-P DH. HGT only. Loss only. ( Koonin , 2003). OEB 192 – 11.09.19. Detecting HGT: differential gene content. (Welch et al., 2002). Detecting HGT: differential gene content. (Welch et al., 2002). - PowerPoint PPT Presentation
Transcript of Detecting HGT: unlikely presence/absence
Detecting HGT: unlikely presence/absence
HGT only Loss only
(Koonin, 2003)
Ex: glycerol-3-P DH
OEB 192 – 11.09.19
Detecting HGT: differential gene content
(Welch et al., 2002)
Detecting HGT: differential gene content
(Welch et al., 2002)
Detecting HGT from genomes: atypical nt composition
(Hacker & Carniel, 2001)
GC% bias across species
(Lawrence & Ochman, 1997)
Hybridization in Yeasts
Hybridization in Yeasts
Detecting HGT from discordant phylogenies
Wednesday (9/21): Limits to gene transfer