Alexander (‘Sasha’) Schwarzman, OSA – The Optical Society, aschwarzman@osa.org Balisage: The Markup Conference 2015

Validating JATS Funding Information R E Q U I R E M E N T S

r1: check 'label → DOIs' consistency within <funding-source> Check that for a funder's label (preferred or not) found in a <funding-source> its DOI is present and correct. Authority: "funder-label-to-dois-authority"

r2: check 'DOI → labels' consistency within <funding-source> Check that for a DOI found in a <funding-source> the funder is represented as its preferred label followed by the acronym, if it exists. Authority: "funder-doi-to-labels-authority"

<funding-source>U.S. Department of Energy (DOE)<named-content content-type="doi">10.13039/100000000</named-content>

<funding-source>Department of Entropy (DOE)<named-content content-type="doi">10.13039/100000015</named-content></funding-source>

r3: check Funding Info ↔ metadata DOIs consistency Check that the set of funder DOIs in the article's metadata is the same as the set of funder DOIs in its backmatter.

r4: check label → DOI consistency between Acknowledgments and metadata Check that for any string in Acknowledgments that matches a funder’s label (preferred or not) its DOI in the article's metadata is present and correct. Authority: "funder-label-to-dois-authority"

<article-meta> <funding-group><award-group id="sp1"> <funding-source>National Science Foundation (NSF) <named-content content-type="doi">10.13039/100000001 </named-content></funding-source></award-group> <award-group id="sp2"><funding-source>U.S. Department of Energy (DOE) 10.13039/100000015 </funding-source></award-group></funding-group></article-meta> … <back> <sec sec-type="funding"><title>FUNDING INFORMATION</title><p> <funding-source>National Science Foundation (NSF) <named-content content-type="doi">10.13039/100000001 </named-content></funding-source> <funding-source>U.S. Department of Energy (DOE) <named-content content-type="doi">10.13039/100000015 </named-content></funding-source></p></sec></back>

<article-meta> <funding-group> <award-group id="sp1"> <funding-source>National Science Foundation (NSF) <named-content content-type="doi">10.13039/100000001 </named-content></funding-source></award-group> DOE missing DOE missing </funding-group> </article-meta> … <ack> <title>ACKNOWLEDGMENTS</title> <p>Support provided by NSF and Department of Energy.</p> </ack>

L O O K U P S , D E R I V E D F R O M T H E F U N D R E F R E G I S T R Y LOOKUP-funder-label-to-dois.xml LOOKUP-funder-doi-to-labels.xml

<labels xmlns:xi="http://www.w3.org/2001/XInclude"> <xi:include href="LOOKUP-funder-label-to-dois-not-in-FundRef.xml"/> … <funder label="U.S. Department of Energy" pref="yes"> <doi>10.13039/100000015</doi> </funder> <funder label="Department of Energy" alt="yes"> <doi>10.13039/100000015</doi> </funder> <funder label="DOE" acronym="yes"> <doi>10.13039/100000015</doi> </funder> … </labels>

<funders xmlns:xi="http://www.w3.org/2001/XInclude"> <xi:include href="LOOKUP-funder-doi-to-labels-not-in-FundRef.xml"/> … <funder doi="10.13039/100000015"> <label type="pref">U.S. Department of Energy</label> <label type="alt">Department of Energy</label> <label type="acronym">DOE</label> </funder> … </funders>

S C H E M A T R O N

<rule id="FUND110" context="funding-group/award-group | back/sec[@sec-type='funding']/p "> <d:func>r1: check 'label -> DOIs' consistency within 'funding-source'.</d:func> <d:req>Warn if funder's DOI does not correspond to the funder's label as defined in the Funder Label Authority.</d:req> <let name="r1" value="m:funding-label-to-dois-report(.)"/> <assert role="warning" test="m:funding-label-to-dois-check($r1)"> <value-of select="m:funding-label-to-dois-print-errors($r1)"/> : authority '<value-of select="$funder-label-to-dois-authority"/>'</assert></rule>

<rule id="FUND130" context="article[exists(back)]"> <d:func>r3: check Funding Info <-> metadata DOIs consistency.</d:func> <d:req>Warn if the set of funder DOIs in the article's backmatter is different from that in its metadata.</d:req> <let name="r3" value="m:funding-front-back-dois-report(.)"/> <assert role="warning" test="m:funding-front-back-dois-check($r3) or empty(//back//named-content[@content-type = 'doi'])"> <value-of select="m:funding-front-back-dois-print-errors($r3)"/></assert>

<rule id="FUND120" context="funding-source"> <d:func>r2: check 'DOI -> labels' consistency within 'funding-source'.</d:func> <d:req>Warn if funder's preferred label (followed by acronym, if exists) does not correspond to any DOI as defined in the Funder DOI Authority.</d:req> <let name="r2" value="m:funding-doi-to-labels-report(.)"/> <assert role="warning" test="m:funding-doi-to-labels-check($r2)"> <value-of select="m:funding-doi-to-labels-print-errors($r2)"/> : authority '<value-of select="$funder-doi-to-labels-authority"/>'</assert></rule>

<d:func>r4: check label -> DOI consistency between Acknowledgments and metadata.</d:func> <d:req>Warn if Acknowledgments contain a funder's label defined in the Funder Label Authority, but the metadata has no corresponding DOI.</d:req> <let name="r4" value="m:funding-match-regex-for-funder-label-report (m:funding-back-ack-text(.),m:funding-front-text(.))"/> <assert role="warning" test="m:funding-match-regex-for-funder-label-check($r4)"> <value-of select="m:funding-match-regex-for-funder-label-print-errors($r4)"/>: authority '<value-of select="$funder-label-to-dois-authority"/>'</assert></rule>