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Supplementary figure 1: Electron microscope images of isolated mitochondria Representative pictures of mitochondrial pellets showing successful mitochondrial isolation following the protocol described in section 2.3.1.

Transcript of ars.els-cdn.com · Web viewGat ing strategy used to characteris e isolated mitochondria from...

Supplementary figure 1: Electron microscope images of isolated mitochondria

Representative pictures of mitochondrial pellets showing successful mitochondrial isolation following the protocol described in section 2.3.1.

A

B

Supplementary figure 2: Gating strategy used to characterise isolated mitochondria from cellular debris and background.

A. Cellular debris and background were excluded from isolated mitochondria by adjusting forward (FSC) and side scatter (SSC) voltages and thresholds. B. The gating strategy was validated by staining mitochondria with MitoTracker Green. Graphs were obtained using FlowJo (v10.1). Data shown are representative of 10 placentae.

Supplementary figure 3: Results of preliminary investigation of the effect of 25, 50, and 100μg/mL ID2 or IIC5 on explant ROS production

A. Total ROS and rate of ROS production of explants during three hours of incubation with ID2 or control antibodies (n=5). B. Total ROS and rate of ROS production of explants during three hours of incubation with IIC5 or control antibodies (n=5).

Supplementary figure 4: Rate of ROS production by placental explants measured by fluorescence during incubation with ID2 or control IgG antibodies, with and without treatment compounds.

A. Rate of ROS production of explants during three hours of incubation with ID2 or control antibodies (n=16). B. Effect of 10 or 20µM melatonin (M) on the rate of ROS production of explants during three hours of incubation with ID2 (n=7). C. Effect of 0.1, 1, or 10µM MitoQ (MQ) on the rate of ROS production of explants during three hours of incubation with ID2 (n=4). D. Effect of 50 or 100nM chloroquine (CLQN) on the rate of ROS production of explants during three hours of incubation with ID2 (n=4). P-value ≤ 0.05 (*).

ID2 JO2

 

Concentration (μg/mL)

Mean control value

EMM

LCL

UCL

% change

% difference

CI leak

 

 

 

 

 

 

 

 

25

0.55

-0.20

-0.55

0.16

63.76

-36.24

50

0.60

-0.10

-0.47

0.28

83.96

-16.04

100

0.38

-0.10

-0.45

0.26

75.02

-24.98

CI OXPHOS

 

 

 

 

 

 

 

25

1.55

-0.28

-0.80

0.25

82.03

-17.97

50

1.35

0.35

-0.17

0.88

126.13

26.13

 

100

1.23

-0.03

-0.52

0.47

97.80

-2.20

CI + CII OXPHOS

 

25

6.64

-0.15

-1.00

0.71

97.82

-2.18

50

6.37

1.54

0.64

2.44

124.12

24.12

 

100

6.33

0.25

-0.60

1.10

103.90

3.90

CI + CII + mGPDH OXPHOS

 

 

 

 

 

 

25

8.21

-0.09

-1.09

0.92

98.92

-1.08

50

7.96

1.93

0.86

2.99

124.22

24.22

100

8.03

0.56

-0.44

1.57

107.03

7.03

CI + CII + mGPDH uncoupled

 

 

 

 

 

 

25

8.95

-0.30

-1.39

0.78

96.60

-3.40

50

8.59

1.79

0.64

2.94

120.85

20.85

100

8.95

-0.21

-1.30

0.87

97.62

-2.38

CI + CII + mGPDH uncoupled + rotenone

 

 

 

 

 

 

25

6.68

0.15

-0.73

1.02

102.17

2.17

50

6.41

1.53

0.60

2.45

123.83

23.83

100

6.51

0.31

-0.57

1.18

104.69

4.69

Complex IV

 

 

 

 

 

 

 

25

31.95

-1.22

-3.60

1.16

96.19

-3.81

50

26.07

3.42

0.90

5.94

113.11

13.11

100

29.70

-0.33

-2.71

2.05

98.90

-1.10

Δ CII OXPHOS

 

 

 

 

 

 

25

5.09

0.10

-0.45

0.66

102.04

2.04

50

5.02

1.18

0.60

1.77

123.58

23.58

100

5.10

0.27

-0.28

0.83

105.37

5.37

Δ mGPDH OXPHOS

 

 

 

 

 

 

25

1.57

0.06

-0.25

0.36

103.49

3.49

50

1.59

0.39

0.07

0.71

124.60

24.60

100

1.70

0.32

0.02

0.62

118.65

18.65

Δ CCCP

 

 

 

 

 

 

25

1.52

-0.07

-0.49

0.34

95.27

-4.73

50

1.49

0.51

0.07

0.95

134.06

34.06

100

1.68

-0.45

-0.86

-0.03

73.35

-26.65

Rotenone sensitive

 

 

 

 

 

 

25

2.27

-0.45

-0.99

0.09

80.29

-19.71

50

2.18

0.26

-0.31

0.84

112.10

12.10

100

2.44

-0.52

-1.06

0.02

78.78

-21.22

Supplementary table 1: Summary of comparison of ID2- to control-treated explant mitochondrial respiration rates.

Control-treated explant values (mean control value) were subtracted from ID2-treated explant values to calculate estimated marginal mean (EMM), lower confidence level (LCL), upper confidence level (UCL), mean ID2-treated explant respiration as a percentage of control respiration (% change), and the change in respiration as a percentage of control respiration (% difference). Statistically significant (p-value ≤ 0.05) changes are indicated in bold.

 

Concentration (μg/mL)

Mean control value

EMM

LCL

UCL

% change

% difference

CI leak

 

 

 

 

 

 

 

25

-2.58

1.50

-1.31

4.30

42.08

-57.92

50

-2.02

1.23

-1.77

4.23

39.22

-60.78

100

0.55

-0.53

-3.34

2.27

3.03

-96.97

CI OXPHOS

 

 

 

 

 

 

 

 

25

-0.82

0.94

-1.61

3.49

-14.96

-114.96

50

-0.31

-0.07

-2.80

2.66

122.79

22.79

100

1.37

-0.11

-2.66

2.44

92.12

-7.88

CI + CII OXPHOS

 

 

 

 

 

 

25

0.15

2.43

0.42

4.44

1720.40

1620.40

50

1.73

-0.15

-2.30

1.99

91.20

-8.80

100

2.21

-0.41

-2.42

1.60

81.31

-18.69

CI + CII + mGPDH OXPHOS

 

 

 

 

 

 

25

15.21

3.56

-2.51

9.64

123.44

23.44

50

16.03

0.22

-6.27

6.71

101.37

1.37

100

15.63

5.66

-0.42

11.74

136.22

36.22

CI + CII + mGPDH uncoupled

 

 

 

 

 

 

25

19.76

3.39

-2.52

9.31

117.17

17.17

50

20.04

-1.83

-8.16

4.49

90.86

-9.14

100

19.70

4.40

-1.52

10.32

122.33

22.33

CI + CII + mGPDH uncoupled + rotenone

 

 

 

 

 

 

25

21.16

2.56

-4.76

9.88

112.10

12.10

50

21.19

-1.56

-9.38

6.26

92.63

-7.37

100

19.57

6.86

-0.46

14.18

135.03

35.03

Antimycin A

 

 

 

 

 

 

 

25

33.83

5.11

-3.63

13.85

115.12

15.12

50

31.94

2.02

-7.32

11.37

106.34

6.34

100

33.93

7.46

-1.28

16.21

122.00

22.00

Δ CII OXPHOS

 

 

 

 

 

 

25

0.97

1.49

-0.16

3.14

253.94

153.94

50

2.04

-0.08

-1.84

1.68

95.97

-4.03

100

0.83

-0.31

-1.95

1.34

63.24

-36.76

Δ mGPDH OXPHOS

 

 

 

 

 

 

25

15.06

1.13

-4.14

6.40

107.53

7.53

50

14.30

0.37

-5.26

6.00

102.60

2.60

100

13.42

6.07

0.81

11.34

145.26

45.26

Δ CCCP

 

 

 

 

 

 

25

4.55

-0.17

-2.54

2.21

96.33

-3.67

50

4.01

-2.05

-4.59

0.49

48.82

-51.18

100

4.07

-1.26

-3.64

1.12

69.02

-30.98

Rotenone sensitive

 

 

 

 

 

 

25

1.40

-0.83

-3.72

2.05

40.50

-59.50

50

1.14

0.27

-2.81

3.36

123.83

23.83

100

-0.13

2.45

-0.43

5.34

-1829.73

-1929.73

Supplementary table 2: Summary of comparison of ID2- to control-treated explant mitochondrial ROS production rates.

Control-treated explant values (mean control value) were subtracted from ID2-treated explant values to calculate estimated marginal mean (EMM), lower confidence level (LCL), upper confidence level (UCL), mean ID2-treated explant ROS production rates as a percentage of control explant ROS production rates (% change), and the change in explant ROS production rates as a percentage of control explant ROS production rates (% difference). Statistically significant (p-value ≤ 0.05) changes are indicated in bold.

 

Concentration (μg/mL)

Mean control value

EMM

LCL

UCL

% change

% difference

CI leak

 

 

25

0.55

-0.15

-0.59

0.30

73.48

-26.52

50

0.60

-0.09

-0.54

0.36

85.16

-14.84

 

100

0.38

0.27

-0.15

0.69

171.55

71.55

CI OXPHOS

 

 

 

 

 

 

 

25

1.55

-0.35

-0.88

0.17

77.08

-22.92

50

1.35

-0.12

-0.65

0.40

90.81

-9.19

100

1.23

0.23

-0.26

0.73

119.14

19.14

CI + CII OXPHOS

 

 

 

 

 

 

 

25

6.64

-0.77

-1.78

0.23

88.35

-11.65

50

6.37

0.61

-0.40

1.61

109.51

9.51

100

6.33

0.65

-0.30

1.60

110.24

10.24

CI + CII + mGPDH OXPHOS

 

 

 

 

 

 

25

8.21

-0.79

-1.95

0.38

90.42

-9.58

50

7.96

0.95

-0.22

2.11

111.88

11.88

100

8.03

0.73

-0.37

1.84

109.13

9.13

CI + CII + mGPDH uncoupled

 

 

 

 

 

 

25

8.95

-1.21

-2.42

0.00

86.51

-13.49

50

8.59

0.74

-0.47

1.94

108.56

8.56

100

8.95

0.11

-1.03

1.25

101.25

1.25

CI + CII + mGPDH uncoupled + rotenone

 

 

 

 

 

 

25

6.68

-0.73

-1.62

0.15

89.03

-10.97

50

6.41

0.67

-0.22

1.55

110.39

10.39

100

6.51

0.30

-0.54

1.13

104.55

4.55

Complex IV

 

 

 

 

 

 

 

25

31.95

-1.32

-4.30

1.66

95.87

-4.13

50

26.07

2.20

-0.78

5.18

108.44

8.44

100

29.70

-1.06

-3.87

1.75

96.44

-3.56

Δ CII OXPHOS

 

 

 

 

 

 

25

5.09

-0.43

-1.17

0.32

91.64

-8.36

50

5.02

0.73

-0.01

1.47

114.57

14.57

100

5.10

0.40

-0.30

1.11

107.91

7.91

Δ mGPDH OXPHOS

 

 

 

 

 

 

25

1.57

-0.01

-0.29

0.27

99.26

-0.74

50

1.59

0.34

0.06

0.61

121.22

21.22

100

1.70

0.08

-0.18

0.35

104.87

4.87

Δ CCCP

 

 

 

 

 

 

25

1.52

-0.44

-0.98

0.09

70.79

-29.21

50

1.49

-0.28

-0.81

0.26

81.43

-18.57

100

1.68

-0.38

-0.88

0.13

77.44

-22.56

Rotenone sensitive

 

 

 

 

 

 

25

2.27

-0.48

-1.05

0.09

78.99

-21.01

50

2.18

0.07

-0.50

0.64

103.36

3.36

100

2.44

-0.17

-0.71

0.37

93.07

-6.93

Supplementary table 3: Summary of comparison of IIC5- to control-treated explant mitochondrial respiration rates.

Control-treated explant values (mean control value) were subtracted from IIC5-treated explant values to calculate estimated marginal mean (EMM), lower confidence level (LCL), upper confidence level (UCL), mean IIC5-treated explant respiration as a percentage of control respiration (% change), and the change in respiration as a percentage of control respiration (% difference). Statistically significant (p-value ≤ 0.05) changes are indicated in bold.

 

Concentration (μg/mL)

Mean control value

EMM

LCL

UCL

% change

% difference

CI leak

 

 

25

0.65

-2.23

-4.71

0.25

-243.57

-343.57

50

0.12

-0.66

-3.32

1.99

-440.65

-540.65

 

100

-0.06

-0.90

-3.39

1.58

1540.60

1440.60

CI OXPHOS

 

25

2.20

-2.99

-5.93

-0.04

-35.90

-135.90

50

1.30

-0.98

-4.13

2.17

24.52

-75.48

100

0.34

0.05

-2.89

3.00

116.16

16.16

CI + CII OXPHOS

 

 

 

 

 

 

25

3.33

-1.75

-4.29

0.79

47.39

-52.61

50

2.76

-0.82

-3.54

1.89

70.08

-29.92

100

1.44

0.35

-2.19

2.89

124.53

24.53

CI + CII + mGPDH OXPHOS

 

 

 

 

 

 

25

20.02

-0.58

-3.57

2.41

97.10

-2.90

50

16.24

2.41

-0.79

5.61

114.87

14.87

100

19.85

-1.55

-4.55

1.44

92.17

-7.83

CI + CII + mGPDH uncoupled

 

 

 

 

 

 

25

21.70

-1.46

-4.97

2.04

93.25

-6.75

50

18.99

1.83

-1.92

5.58

109.62

9.62

100

21.27

-1.17

-4.68

2.34

94.48

-5.52

CI + CII + mGPDH uncoupled + rotenone

 

 

 

 

 

 

25

23.42

-1.02

-5.31

3.27

95.63

-4.37

50

20.37

2.60

-1.99

7.18

112.74

12.74

100

22.60

-0.09

-4.38

4.21

99.62

-0.38

Antimycin A

 

 

 

 

 

 

25

39.20

-2.62

-7.07

1.83

93.31

-6.69

50

33.00

5.09

0.33

9.86

115.44

15.44

100

36.54

-0.93

-5.38

3.53

97.47

-2.53

Δ CII OXPHOS

 

 

 

 

 

 

25

1.13

1.25

-0.12

2.62

210.78

110.78

50

1.45

0.21

-1.26

1.67

114.18

14.18

100

1.10

0.29

-1.09

1.66

126.04

26.04

Δ mGPDH OXPHOS

 

 

 

 

 

 

25

16.70

1.16

-1.30

3.62

106.94

6.94

50

13.48

3.24

0.62

5.87

124.06

24.06

100

18.41

-1.92

-4.38

0.54

89.59

-10.41

Δ CCCP

 

 

 

 

 

 

25

1.68

-0.95

-3.17

1.28

43.46

-56.54

50

2.75

-0.56

-2.94

1.82

79.73

-20.27

100

1.42

0.38

-1.85

2.61

126.48

26.48

Rotenone sensitive

 

 

 

 

 

 

25

1.72

0.51

-2.43

3.45

129.64

29.64

50

1.38

0.70

-2.44

3.85

150.87

50.87

100

1.33

1.06

-1.89

4.00

179.60

79.60

Supplementary table 4: Summary of comparison of IIC5- to control-treated explant mitochondrial ROS production rates.

Control-treated explant values (mean control value) were subtracted from IIC5-treated explant values to calculate estimated marginal mean (EMM), lower confidence level (LCL), upper confidence level (UCL), mean IIC5-treated explant ROS production rates as a percentage of control explant ROS production rates (% change), and the change in explant ROS production rates as a percentage of control explant ROS production rates (% difference). Statistically significant (p-value ≤ 0.05) changes are indicated in bold.