Abstracted literature on Mediterranean biodiversity since 10 years
Abstracted literature on Mediterranean biodiversity since 10 years Annabelle Amm Post-doc BioDivMex...
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Transcript of Abstracted literature on Mediterranean biodiversity since 10 years Annabelle Amm Post-doc BioDivMex...
Abstracted literature on Mediterranean
biodiversity since 10 years
Annabelle Amm
Post-doc BioDivMexIMEP, DFCVCNRS
1
Context
Mediterranean basin
2
Threats
Climate changeAnthropic pressure
Hotspot of biodiversity
Context
Mediterranean basin
Synthesis on Mediterranean biodiversity research in terms of:
2?Ecosystems
Countries
Collaborations
Taxa
Threats
Climate changeAnthropic pressure
Hotspot of biodiversity
Abstracted literature since 10 years
Synthesis of BioDivMex workshop
Strengths, needs and locks of Mediterranean biodiversity research
Context
Mediterranean basin
Synthesis on Mediterranean biodiversity research in terms of:
2?Ecosystems
Countries
Collaborations
Taxa
Threats
Climate changeAnthropic pressure
Hotspot of biodiversity
Abstracted literature since 10 years
Synthesis of BioDivMex workshop
Strengths, needs and locks of Mediterranean biodiversity research
Method
1245 references (Only Mediterranean
basin)
Reference management
software (EndNote)
Extract information in a database
Authors, Years, Nb of authors, Title, Name review, Research laboratory, Nb of laboratories, Countries, Key words, Fieldwork countries, Ecosystem, Taxon
Fields
Min year: 2001
Max year: 2011
Mediterranean biodiversity
3
Articles per year
Results
Articles per country
Collaborations
Ecosystems
Taxa
Journals
33 27 47 65 81
113
127 18
1 196 211
213
R² = 0,9642
0
50
100
150
200
250
2001
2002
2003
2004
2005
2006
2007
2008
2009
2010
2011
Num
ber o
f pap
ers
Year
ResultsArticles per year
4
33 27 47 65 81
113
127 18
1 196 211
213
R² = 0,9642
0
50
100
150
200
250
2001
2002
2003
2004
2005
2006
2007
2008
2009
2010
2011
Num
ber o
f pap
ers
Year
ResultsArticles per year
Papers dealing with Mediterranean biodiversity are in continuous increase since 10 years
Growing interest for Mediterranean biodiversity and biological conservation
If this trend is followed, 310 articles should be published in 2015
4
Results
Articles per year
Articles per country
Collaborations
Ecosystems
Taxa
Journals
ResultsArticles per country
84%
6% 10%
0102030405060708090
Nor
th-M
edite
rran
ean
coun
trie
s
Sout
h-M
edite
rran
ean
coun
trie
s
Oth
er c
ount
ries
Perc
enta
ge
Discrepancy between South and North-Mediterranean countries
5
ResultsArticles per country
84%
6% 10%
0102030405060708090
Nor
th-M
edite
rran
ean
coun
trie
s
Sout
h-M
edite
rran
ean
coun
trie
s
Oth
er c
ount
ries
Perc
enta
ge
North-Mediterranean countries
3 4
42
7 61 2
16
01020304050
Coun
ts
South-Mediterranean countries
Discrepancy between South and North-Mediterranean countries
Israel and Tunisia are the best South-Mediterranean represented countries
Spain + Italy: 54% of articles
5
ResultsArticles per country
Other countries as Germany (24 articles) and England (27) also contribute to the literature
6
ResultsArticles per country
Other countries as Germany (24 articles) and England (27) also contribute to the literature
6
ResultsArticles per country
Other countries as Germany (24 articles) and England (27) also contribute to the literature
6
ResultsArticles per country
Limit of the approach: Only 1 article for Malta or Morocco
Other countries as Germany (24 articles) and England (27) also contribute to the literature
6
Results
Articles per year
Articles per country
Collaborations
Ecosystems
Taxa
Journals
ResultsCollaborations
0
5
10
15
20
25
30
35
1 2 3 4 5 6 7 8 9 ≥ 10
Perc
enta
ge
Laboratories nb
1060 research laboratories involved in Mediterranean biodiversity research
Mean number of authors per article: 4,33
7
ResultsCollaborations
0
5
10
15
20
25
30
35
1 2 3 4 5 6 7 8 9 ≥ 10
Perc
enta
ge
Laboratories nb
The majority of the abstracted articles involves 1 laboratory research (33%) or 2 lab. (33%) or 3 lab. (17,5%).
These modalities constitute 83.5 % of the literature. 7
1060 research laboratories involved in Mediterranean biodiversity research
Mean number of authors per article: 4,33
ResultsCollaborations
Articles are either international (Inter), inter-laboratory in the same country (IntraC) or intra-laboratory (Intra)
405 417 417
0
100
200
300
400
500
Inter Intra IntraC
Coun
ts
8
Inter IntraC Intra
ResultsCollaborations
International collaborations mostly implicate Mediterranean countries
405 417 417
0
100
200
300
400
500
Inter Intra IntraC
Coun
ts
8
Inter IntraC Intra
Articles are either international (Inter), inter-laboratory in the same country (IntraC) or intra-laboratory (Intra)
6
153
4
112130
0
50
100
150
200
interE_e interE_m interG_g interG_m interM_m
Coun
tsInternational
Europe Europe + Mediterranean
World World + Mediterranean
Mediterranean
ResultsIntra-Mediterranean
collaborations
60%
40%
Main collaborations are: • Spain-France (25)
• France-Italy (12)
• Italy-Spain (10)
• Spain-Portugal (11)
• Tunisia-France (10)
More North-North collaborations than North-South
No collaboration South-South
9
Results
Articles per year
Articles per country
Collaborations
Ecosystems
Taxa
Journals
ResultsJournals
382 journals inventoried
10 10 10 10 10 10 10 11 11 11 1114 14 15 17 18 18 18 20 22 23 23
2833
56
0
10
20
30
40
50
60
Acta
Bot
anic
a G
allic
a
Agric
ultu
re E
cosy
stem
s &
Env
ironm
ent
Chem
istr
y an
d Ec
olog
y
Jour
nal o
f App
lied
Ecol
ogy
Jour
nal o
f Nat
ural
His
tory
Med
iterr
anea
n M
arin
e Sc
ienc
e
Zoot
axa
Com
ptes
Ren
dus
Biol
ogie
s
Envi
ronm
enta
l Man
agem
ent
Land
scap
e an
d U
rban
Pla
nnin
g
Mol
ecul
ar P
hylo
gene
tics
and
Evol
ution
Div
ersi
ty a
nd D
istr
ibuti
ons
Estu
arin
e Co
asta
l and
She
lf Sc
ienc
e
Plan
t Bio
syst
ems
PLAN
T EC
OLO
GY
ACTA
OEC
OLO
GIC
A-IN
TERN
ATIO
NAL
…
Aqua
tic C
onse
rvati
on-M
arin
e an
d…
Mar
ine
Envi
ronm
enta
l Res
earc
h
Fore
st E
colo
gy a
nd M
anag
emen
t
Jour
nal o
f Bio
geog
raph
y
Mar
ine
Ecol
ogy-
Prog
ress
Ser
ies
Mar
ine
pollu
tion
bulle
tin
Hyd
robi
olog
ia
Biol
ogic
al C
onse
rvati
on
Biod
iver
sity
and
Con
serv
ation
Coun
ts
10
ResultsJournals
382 journals inventoried
10 10 10 10 10 10 10 11 11 11 1114 14 15 17 18 18 18 20 22 23 23
2833
56
0
10
20
30
40
50
60
Acta
Bot
anic
a G
allic
a
Agric
ultu
re E
cosy
stem
s &
Env
ironm
ent
Chem
istr
y an
d Ec
olog
y
Jour
nal o
f App
lied
Ecol
ogy
Jour
nal o
f Nat
ural
His
tory
Med
iterr
anea
n M
arin
e Sc
ienc
e
Zoot
axa
Com
ptes
Ren
dus
Biol
ogie
s
Envi
ronm
enta
l Man
agem
ent
Land
scap
e an
d U
rban
Pla
nnin
g
Mol
ecul
ar P
hylo
gene
tics
and
Evol
ution
Div
ersi
ty a
nd D
istr
ibuti
ons
Estu
arin
e Co
asta
l and
She
lf Sc
ienc
e
Plan
t Bio
syst
ems
PLAN
T EC
OLO
GY
ACTA
OEC
OLO
GIC
A-IN
TERN
ATIO
NAL
…
Aqua
tic C
onse
rvati
on-M
arin
e an
d…
Mar
ine
Envi
ronm
enta
l Res
earc
h
Fore
st E
colo
gy a
nd M
anag
emen
t
Jour
nal o
f Bio
geog
raph
y
Mar
ine
Ecol
ogy-
Prog
ress
Ser
ies
Mar
ine
pollu
tion
bulle
tin
Hyd
robi
olog
ia
Biol
ogic
al C
onse
rvati
on
Biod
iver
sity
and
Con
serv
ation
Coun
ts
Biological conservation is a main problematic for Mediterranean biodiversity research
10
5 5 5 5 5 5 5 5 5 5 5 5 5 5 6 6 6 7 7 7 8 8 8 8 8 9 9 9 10 10 11 11 1316 17 17 19
24
46
05
101520253035404550
Agro
fore
stry
Sys
tem
s
Ecol
ogy
Lett
ers
Envi
ronm
enta
l Pol
lutio
n
Fres
eniu
s Env
ironm
enta
l…
Isra
el Jo
urna
l of E
colo
gy &
…
Jour
nal f
or N
atur
e Co
nser
vatio
n
Jour
nal o
f Env
ironm
enta
l…
Myc
orrh
iza
Oec
olog
ia
Oik
os
Scie
nce
of th
e To
tal…
taxo
n
Zool
ogy
in th
e M
iddl
e Ea
st
Zoot
axa
Anna
ls of
Bot
any
Com
ptes
Ren
dus B
iolo
gies
Mol
ecul
ar E
colo
gy
Glo
bal E
colo
gy a
nd…
Jour
nal o
f Arid
Env
ironm
ents
Pala
eoge
ogra
phy…
Cons
erva
tion
Biol
ogy
Envi
ronm
enta
l Man
agem
ent
Isra
el Jo
urna
l of P
lant
Sci
ence
s
Land
scap
e ec
olog
y
Mol
ecul
ar P
hylo
gene
tics a
nd…
Appl
ied
Soil
Ecol
ogy
Jour
nal o
f App
lied
Ecol
ogy
Jour
nal o
f Veg
etati
on S
cien
ce
Acta
Bot
anic
a G
allic
a
Agric
ultu
re E
cosy
stem
s &…
Dive
rsity
and
Dis
trib
ution
s
Land
scap
e an
d U
rban
Pla
nnin
g
Plan
t Bio
syst
ems
Acta
oec
olog
ica-
inte
rnati
onal
…
Jour
nal o
f Bio
geog
raph
y
Plan
t eco
logy
Fore
st E
colo
gy a
nd…
Biol
ogic
al C
onse
rvati
on
Biod
iver
sity
and
Con
serv
ation
Coun
ts
ResultsJournals
Terrestrial
For terrestrial ecosystems, biodiversity and biological conservation are a main problematic
research
Basic ecological journals are not well represented
11
5 5 6 6 6 6 6 6 7 7 7 79 9 10
12
1517
19
22
0
5
10
15
20
25
Hel
gola
nd M
arin
e Re
sear
ch
Jour
nal o
f Nat
ural
His
tory
Bota
nica
mar
ina
Cybi
um
Jour
nal o
f cos
tal r
esea
rch
Jour
nal o
f Exp
erim
enta
l Mar
ine…
Mar
ine
Ecol
ogy-
an E
volu
tiona
ry…
Plos
One
Italia
n Jo
urna
l of Z
oolo
gy
Jour
nal o
f the
Mar
ine
Biol
ogic
al…
Mar
ine
Biol
ogy
Scie
ntia
Mar
ina
Aqua
tic C
onse
rvati
on-M
arin
e…
Med
iterr
anea
n M
arin
e Sc
ienc
e
Chem
istr
y an
d Ec
olog
y
Estu
arin
e Co
asta
l and
She
lf…
Hyd
robi
olog
ia
Mar
ine
Envi
ronm
enta
l Res
earc
h
Mar
ine
pollu
tion
bulle
tin
Mar
ine
Ecol
ogy-
Prog
ress
Ser
ies
Coun
ts
Marine
12
ResultsJournals
Journal specialized on marine ecologyFew basic ecological journals
5 5 6 6 6 6 6 6 7 7 7 79 9 10
12
1517
19
22
0
5
10
15
20
25
Hel
gola
nd M
arin
e Re
sear
ch
Jour
nal o
f Nat
ural
His
tory
Bota
nica
mar
ina
Cybi
um
Jour
nal o
f cos
tal r
esea
rch
Jour
nal o
f Exp
erim
enta
l Mar
ine…
Mar
ine
Ecol
ogy-
an E
volu
tiona
ry…
Plos
One
Italia
n Jo
urna
l of Z
oolo
gy
Jour
nal o
f the
Mar
ine
Biol
ogic
al…
Mar
ine
Biol
ogy
Scie
ntia
Mar
ina
Aqua
tic C
onse
rvati
on-M
arin
e…
Med
iterr
anea
n M
arin
e Sc
ienc
e
Chem
istr
y an
d Ec
olog
y
Estu
arin
e Co
asta
l and
She
lf…
Hyd
robi
olog
ia
Mar
ine
Envi
ronm
enta
l Res
earc
h
Mar
ine
pollu
tion
bulle
tin
Mar
ine
Ecol
ogy-
Prog
ress
Ser
ies
Coun
ts
Marine
5 56
89
12
0
2
4
6
8
10
12
14
Biol
ogic
al C
onse
rvati
on
Com
ptes
Ren
dus
Biol
ogie
s
Biod
iver
sity
and
Con
serv
ation
Fres
hwat
er B
iolo
gy
Aqua
tic C
onse
rvati
on-M
arin
ean
d Fr
eshw
ater
Eco
syst
ems
Hyd
robi
olog
ia
Coun
ts
Freshwater
Journal specialized on marine ecologyFew basic ecological journals
Journal specialized in aquatic ecologyFew basic ecological journals
12
ResultsJournals
Articles per year
Results
Articles per country
Collaborations
Ecosystems
Taxa
Journals
ResultsEcosystems
Terrestrial: 60% of the articles
Marin: 30%
Freshwater: 10%
737
369
135
0
100
200
300
400
500
600
700
800
Terrestrial Marine Freshwater
Coun
ts
13
ResultsEcosystems
Soil constitutes 9% of the articles
Terrestrial
Forest ecosystem is well represented (18% of the articles –terrestrial ecosystems-)
Agricultural system constitutes 13% of the articles
14
288
33 322 4 8 1
0
50
100
150
200
250
300
350
Mar
ine
Dee
p-m
arin
e
Coas
tal l
agoo
n
Estu
arin
e
Mar
ine
cave
Mar
ine
farm
Mar
ine
harb
our
Coun
ts
ResultsEcosystems
Further analyses are necessary to better describe what “Marine ecosystem” mean
Marine
15
288
33 322 4 8 1
0
50
100
150
200
250
300
350
Mar
ine
Dee
p-m
arin
e
Coas
tal l
agoo
n
Estu
arin
e
Mar
ine
cave
Mar
ine
farm
Mar
ine
harb
our
Coun
ts
29
43
9
17 17
05
101520253035404550
Fres
hwat
er
Rive
r
Lake
Pond
s
Tem
pora
ry w
etla
nds
Coun
ts
ResultsEcosystems
Good representation of all the types of freshwater ecosystems
Marine Freshwa
ter
15
Further analyses are necessary to better describe what “Marine ecosystem” mean
288
33 322 4 8 1
0
50
100
150
200
250
300
350
Mar
ine
Dee
p-m
arin
e
Coas
tal l
agoo
n
Estu
arin
e
Mar
ine
cave
Mar
ine
farm
Mar
ine
harb
our
Coun
ts
ResultsEcosystems
Many ecosystems are represented (> 100)
Marine
15
29
43
9
17 17
05
101520253035404550
Fres
hwat
er
Rive
r
Lake
Pond
s
Tem
pora
ry w
etla
nds
Coun
ts
Good representation of all the types of freshwater ecosystems
FreshwaterFurther analyses are
necessary to better describe what “Marine ecosystem” mean
Articles per year
Results
Articles per country
Collaborations
Ecosystems
Taxa
Journals
ResultsTaxa
52% of the articles focus on Animals
638
235 61
421
28 28
0
100
200
300
400
500
600
700
Coun
ts
35% on Plants
13% on other taxa (fungi, bacteria etc…)
16
ResultsTaxa
Animals
Groups such as nematods, cnidaria, annelida are underrepresented (according to the number of species they include)
Many groups of Animalia kingdom are represented, particularly insects, fishes, mammals and birds
17
1721
16 16
1
52
3 2
12
35
113
30
77
97
28
64
712
43
4
1410
17 10
16 14
1 3 3
0
20
40
60
80
100
120
Coun
ts
ResultsTaxa
Insect
35
1
6
1
15
8
2
19
1 24
2
0
5
10
15
20
25
30
35
40
Coun
ts
AnimalsMany groups of Animalia kingdom are represented, particularly insects, fishes, mammals and birds
17
Insects are predominantly represented (15% of the articles), particularly Coleoptera
Elaphocera emarginata
Groups such as nematods, cnidaria, annelida are underrepresented (according to the number of species they include)
336
379
10
50100150200250300350400
Coun
ts
ResultsTaxa
Spermatophyta are predominantly represented (90% of the articles)
Plants
18
336
379
10
50100150200250300350400
Coun
ts
ResultsTaxa
2 2 1 24
1 2 1 1 1 1
79
16
2
30
6
0
5
10
15
20
25
30
35Co
unts
Spermatophyta are predominantly represented (90% of the articles)
Trees constitute 23% of the studied taxa
Quercus are well represented, particularly “cork oak” that present economical interest
Plants
18
Conclusion
19
Increase interest for Mediterranean biodiversity since 10 years
Conclusion
19
Increase interest for Mediterranean biodiversity since 10 years
Discrepancy between South and North Mediterranean countries in terms of abstracted literature
Conclusion
19
Increase interest for Mediterranean biodiversity since 10 years
Few Mediterranean countries collaborations (particularly South-South collaborations)
Discrepancy between South and North Mediterranean countries in terms of abstracted literature
Conclusion
19
Increase interest for Mediterranean biodiversity since 10 years
Few Mediterranean countries collaborations (particularly South-South collaborations)
Discrepancy between South and North Mediterranean countries in terms of abstracted literature
Main journals concern biological conservation
Conclusion
Increase interest for Mediterranean biodiversity since 10 years
Few Mediterranean countries collaborations (particularly South-South collaborations)
Discrepancy between South and North Mediterranean countries in terms of abstracted literature
Main journals concern biological conservation
19
Terrestrial ecosystem are better described than aquatic ecosystems (marine + freshwater)
Conclusion
Increase interest for Mediterranean biodiversity since 10 years
Few Mediterranean countries collaborations (particularly South-South collaborations)
Terrestrial ecosystem are better described than aquatic ecosystems (marine + freshwater)
Animals are better represented than plants; important representation of “visible” animals (e. g. mammals) 19
Discrepancy between South and North Mediterranean countries in terms of abstracted literature
Main journals concern biological conservation
Perspectives
Contact research laboratories looking forward their activities on Mediterranean biodiversity research (thesis, non-abstracted literature)
Many articles are missing, few representation of some authors or countries
Better approach using ecosystem key word (e. g. Mediterranean soil)
Synthesis of BioDivMex workshop
Limit of the approach To complete…
Key words Institute
subscription to Web Of Knowledge
20
Strength, needs and locks on Mediterranean biodiversity
research?
Perspectives
Strength, needs and locks on Mediterranean biodiversity
research?
Many articles are missing, few representation of some authors or countries
Limit of the approach To complete…
Key words Institute
subscription to Web Of Knowledge
20
Contact research laboratories looking forward their activities on Mediterranean biodiversity research (thesis, non-abstracted literature)
Better approach using ecosystem key word (e. g. Mediterranean soil)
Synthesis of BioDivMex workshop
Special thanks to Nathalie Polvani and Françoise Fleury-Blanc who really helped us
to organize this workshop
Thanks for your attention
Photographic credits: Teddy Baumberger, Thierry Gauquelin, Pierre-Jean Dumas and unknown people from the web