Post on 15-Mar-2016
description
Sequence/Structure Alignment Resources from NCBI
Steve Bryant
Protein Data BankRutgers University
November 19, 2005
… Structure look-up tools
… Structure-structure alignments
… Alignment tools in client software
… Conserved domain family alignments *
… Domain subfamily analysis tools *
Sequence / Structure Alignment Resources from NCBI…
Entrez Retrieval System ...
Protein Sequences
MEDLINEAbstracts
BLASTSequenceSimilarity
Protein Sequences
3D Structures
Nucleotide Sequences
Term FrequencyStatistics
VAST StructureSimilarity
BLASTSequenceSimilarity
1,500,000 users ...60,000,000 hits ...
… per day
Structure Neighbor Alignment …
Cn3D
Threading Leptin 2005 …
Cn3D