Christian Olsen Field Application Scientist christian@biomatters.com

BIOMATTERS

AgendaIntroduction

Geneious

Geneious Server

Desktop Solutions

BIOMATTERS

Geneious

Cloud SolutionsGenome profiler Melanoma profiler

BIOMATTERS

Biologists

Bioinformaticians

Visualize

Time

Volume

BIOMATTERS

Number of research publications citing use of software per year

0

750

1500

2250

3000

1996 1998 2000 2002 2004 2006 2008 2010 2012 2014

Sequencher Lasergene Vector NTI CLC BioGeneious

BIOMATTERS

Most cited software

One framework 60+ file formats Glass box approach Extensible

BIOMATTERS

Efficient

One framework 60+ file formats Glass box approach Extensible

Plugins Public API Workflows

BIOMATTERS

Efficient

ComprehensivePhylogenetics Cloning NGS Annotations

BIOMATTERS

Cloning

BIOMATTERS

Phylogenetics and

NGS

BIOMATTERS

Annotations

BIOMATTERS

Geneious Desktop Researchers use the Geneious interface to run analysis

Geneious Server Host Runs on your own hardware

Optional HPC Run computation in separate cluster

with standard scheduling

SQL Storage On Geneious server host or elsewhere

BIOMATTERS

HPC No scripting Rocks cluster/Blade server 8+ cores & 20Gb RAM RHEL or CentOS 5/6

BIOMATTERS

De novo Assembly

Genome Alignment

Sequence Alignment

Sequence Search

Annotation Tools Phylogenetics

Geneious Assembler

Geneious Assembler

Geneious Aligner BLAST SAM Tools Geneious

Treebuilder

Velvet Maq ClustalW NJ & UPGMA

Velvet Optimizer Bowtie 1 & 2 MUSCLE MrBayes

SOAP de novo BWA MAFFT PhyML

Mira SOAP2 PAUP*

CAP3 TopHat RAxML

MAUVE GARLI

LastZ FastTree

Geneious & Geneious server Collaborations & custom dev

BIOMATTERS

Future

Me Us You

Christian Olsen Field Application Scientist christian@biomatters.com

Thank you!

@biomatters @geneious