Geneious R8: a bioinformatics platform for biologists
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Transcript of Geneious R8: a bioinformatics platform for biologists
AgendaIntroduction
Geneious
Geneious Server
Desktop Solutions
BIOMATTERS
Geneious
Cloud SolutionsGenome profiler Melanoma profiler
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Biologists
Bioinformaticians
Visualize
Time
Volume
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Number of research publications citing use of software per year
0
750
1500
2250
3000
1996 1998 2000 2002 2004 2006 2008 2010 2012 2014
Sequencher Lasergene Vector NTI CLC BioGeneious
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Most cited software
One framework 60+ file formats Glass box approach Extensible
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Efficient
One framework 60+ file formats Glass box approach Extensible
Plugins Public API Workflows
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Efficient
ComprehensivePhylogenetics Cloning NGS Annotations
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Cloning
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Phylogenetics and
NGS
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Annotations
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Geneious Desktop Researchers use the Geneious interface to run analysis
Geneious Server Host Runs on your own hardware
Optional HPC Run computation in separate cluster
with standard scheduling
SQL Storage On Geneious server host or elsewhere
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HPC No scripting Rocks cluster/Blade server 8+ cores & 20Gb RAM RHEL or CentOS 5/6
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De novo Assembly
Genome Alignment
Sequence Alignment
Sequence Search
Annotation Tools Phylogenetics
Geneious Assembler
Geneious Assembler
Geneious Aligner BLAST SAM Tools Geneious
Treebuilder
Velvet Maq ClustalW NJ & UPGMA
Velvet Optimizer Bowtie 1 & 2 MUSCLE MrBayes
SOAP de novo BWA MAFFT PhyML
Mira SOAP2 PAUP*
CAP3 TopHat RAxML
MAUVE GARLI
LastZ FastTree
Geneious & Geneious server Collaborations & custom dev
BIOMATTERS
Future
Me Us You
