Electrophysiological Signal Analysis and Visualization using Cloudwave for Epilepsy Clinical...

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Epilepsy is the most common serious neurological disorder affecting 50-60 million persons worldwide. Electrophysiologi-cal data recordings, such as electroencephalogram (EEG), are the gold standard for diagnosis and pre-surgical evaluation in epilepsy patients. The increasing trend towards multi-center clinical studies require signal visualization and analysis tools to support real time interaction with signal data in a collabora-tive environment, which are cannot be supported by traditional desktop-based standalone applications. As part of the Preven-tion and Risk Identification of SUDEP Mortality (PRISM) project, we have developed a Web-based electrophysiology data visualization and analysis platform called Cloudwave using highly scalable open source cloud computing infrastruc-ture. Cloudwave is integrated with the PRISM patient cohort identification tool called MEDCIS (Multi-modality Epilepsy Data Capture and Integration System). The Epilepsy and Sei-zure Ontology (EpSO) underpins both Cloudwave and MEDCIS to support query composition and result retrieval. Cloudwave is being used by clinicians and research staff at the University Hospital - Case Medical Center (UH-CMC) Epi-lepsy Monitoring Unit (EMU) and will be progressively de-ployed at four EMUs in the United States and the United Kingdom as part of the PRISM project.

Transcript of Electrophysiological Signal Analysis and Visualization using Cloudwave for Epilepsy Clinical...

Catherine  Jayapandian

 Case  Western  Reserve  University,  Ohio,  USA    

 

o  Background:  Electrophysiological  Data  Management  

o  Challenges:  Big  Data,  Mul;center  studies  o  Cloudwave  Framework:  Features,  Components  o  Current  Results  o  Future  Direc;ons  

o  What  is  Epilepsy?  n  Most  common  neurological  disorder  affec;ng  60  

million  worldwide  

o  How  is  Epilepsy  detected?  n  Mul;-­‐modal  Electrophysiological  evalua;ons  like  

EEG,  EKG,  BP,  O2  and  CO2,  Sleep  data,  video  n  Electroencephalogram  (EEG)  is  the  gold  standard  

for  diagnosis  and  pre-­‐surgical  evalua;on  

o  Mul;-­‐center  Clinical  Study  for  Preven;on  and  Iden;fica;on  of  Risks  in  SUDEP  Pa;ents  

 o  Key  Components  

n  MEDCIS    Mul$modality  Epilepsy  Data  Capture  and  Integra$on  System  

n  OPIC  Online  Pa$ent  Informa$on  Capture  

n  EpiDEA  Epilepsy  Data  Extrac$on  and  Annota$on  

n  Cloudwave  Electrophysiological  Signal  “Big  Data”  on  the  Cloud  

o  Ontology-­‐driven  Web-­‐based  Electrophysiological  Epilepsy  Signal  Query,  Visualiza;on  and  Analysis  Framework  

o  Provides  High  Performance  Cloud  CompuBng  Infrastructure  for  handling  Electrophysiological  “Big  Data”  

o  PaBents  Cohorts  are  selected  using  the  MEDCIS  Query  Builder  

o  PaBent  ID  is  linked  to  Cloudwave  Signal  Viewer  

All  studies  and  the  related  seizure  events  for  the  pa;ent  can  be  viewed  using  Cloudwave  interface  

o  SelecBon  of  PaBent  Study,  Montage,  Signal/Channels  for  display  

o  Facilitate  creaBon  of  new  montages  (referenBal  and  bipolar)  

o  SelecBon  of  Seizure  Events/AnnotaBons  Mouse  zooming  to  ;me-­‐range  of  interest  

Expor;ng  as  image  and  prin;ng  

Visually  navigate  using  scroll  to  select  ;me-­‐range  

o  SelecBon  of  Filters  –  SensiBvity,  HF  Filter    and  Time  Constant  

o  Electrophysiological  “Big”  Signal  Data  Storage  on  HDFS  by  collec$ng  similar  signals  for  correla$on  and  quan$ta$ve  signal  analysis  using  MapReduce  distributed  processing  n  Cloudwave:  Distributed  Processing  of  “Big  Data”  from  

Electrophysiological  Recordings  for  Epilepsy  Clinical  Research  Using  Hadoop,  AMIA  2013  (accepted)  

o  Computa;on  of  complex  Signal  Processing  algorithms  –  Cardiac  Arrhythmia,  Respiratory  Arrhythmia  and  related  measurements  for  real-­‐;me  rendering  on  Cloudwave  web  interface  (work  in  progress)  

o  PRISM  is  NIH  funded,  mul--­‐disciplinary  and  mul--­‐center   (4   par;cipa;ng   centers)   –   recrui;ng   1200  pa;ents    

o  Cloudwave   establishes   the   capability   for  comprehensive  comparaBve  studies  of  SUDEP  and  near-­‐SUDEP  cases  vs.  cohort  survivors  

o  Cloudwave   is  a  key  component  of  PRISM  project–  facilitate  the  management  of  Electrophysiological  “Big”   Data   and   Real   Time   Web   Rendering   of  Mul-modal  signals  

o  For  more  details,  please  visit:  hap://prism.case.edu  

o  Contact:  Catherine  Jayapandian  (cpj3@case.edu)