Sequence Alignment Methods and Algorithms
NVIDIA Research Thrust Jared Hoberock and Nathan Bell.
Quantum Lower Bound for the Collision Problem Scott Aaronson 1/10/2002 quant-ph/0111102 I was born at the Big Bang. Cool! We have the same birthday.
Center for Biological Sequence Analysis Prokaryotic gene finding Marie Skovgaard Ph.D. student [email protected].
Sequence alignments complete coverage
CMPUT 329 - Computer Organization and Architecture II1 CMPUT329 - Fall 2003 Topic C: State Assignment José Nelson Amaral.
Self Stabilizing Smoothing and Counting Maurice Herlihy, Brown University Srikanta Tirthapura, Iowa State University.
Rapid Global Alignments How to align genomic sequences in (more or less) linear time.
Sequence Similarity. The Viterbi algorithm for alignment Compute the following matrices (DP) M(i, j):most likely alignment of x 1 …x i with y 1 …y j.
School of Computer Science Carnegie Mellon Data Mining using Fractals and Power laws Christos Faloutsos Carnegie Mellon University.
Evolution at the DNA level …ACGGTGCAGTTACCA… …AC----CAGTCCACCA… Mutation SEQUENCE EDITS REARRANGEMENTS Deletion Inversion Translocation Duplication.
Machine Learning for Protein Classification Ashutosh Saxena CS 374 – Algorithms in Biology Thursday, Nov 16, 2006.