Cao et al. (2000) Gene Phylogeny of Mammals a good example where molecular sequences have led to a big improvement of our understanding of evolution.
Introduction to Bioinformatics
Studies on Oryzias Fishes for Assessment of Environmental Condition
The Origins of Triticum Domestication Ben Grady Dept. of Botany UW-Madison.
Madagascar: need and opportunity Brian Fisher, California Academy of Sciences Madagascar Biodiversity Center.
Pairwise alignment