Why Align Sequences? DNA sequences (4 letters in alphabet) – GTAAACTGGTACT… Amino acid (protein) sequences (20 letters) – SSHLDKLMNEFF… Align them so we.
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A Large Version of the Small Parsimony Problem Optimally reconstruct ancestral sequences given - unrooted phylogeny (hence ‘small’ parsimony p.) - multiple.
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1 Getting Started Download and install Haploview .
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