Annotation and Visualization Doreen Ware. Project Challenges Rapidly growing sequence data Full annotation of all clones New high-performance computing.
Comparative genomics of the fungal kingdom
Genome Browsing, Genomic Data Mining and Genome Data Visualization with Ensembl, Biomart and IGV (UEB-UAT Bioinformatics Course - Session 1.3 - VHIR, Barcelona)
Ensembl Plants: Visualising, mining and analysing crop genomics data
Alignment Approaches II: Long Reads
COMPARATIVE FUNGAL GENOMICS : KNOWN KNOWNS & KNOWN UNKNOWNS. Josh Herr, Plant Biology Interdepartmental Program.
Comparative Genomics and Evolution Pollard, K.S., et al., Forces Shaping the Fastest Evolving Regions in the Human Genome. PLoS Genetics 2(10), 2006. McLean,
Whole Genome Alignment
Assignment 2: Papers read for this assignment Paper 1: PALMA: mRNA to Genome Alignments using Large Margin Algorithms Paper 2: Optimal spliced alignments.
UCSC Genome Browser Dror Hollander Gil Ast Lab Sackler Medical School.
Exploring Alternative Splicing Features using Support Vector Machines
2013 iPlant workshop Marcela Karey Monaco. 2013 What is Gramene? An integrated plant reference genome resource Comparative genomics hub of data & tools.
