Sequence motifs, information content, logos, and HMMs Morten Nielsen, CBS, BioCentrum, DTU.
1Scientific Advisory Board meeting | 31 maart 2011 Milan WP2: Data organisation and electronic platform Polly Boon.
Artificial Neural Networks 1 Morten Nielsen Department of Systems Biology, DTU.
CENTER FOR BIOLOGICAL SEQUENCE ANALYSISTECHNICAL UNIVERSITY OF DENMARK DTU T cell Epitope predictions using bioinformatics (Hidden Markov models) Morten.
CENTER FOR BIOLOGICAL SEQUENCE ANALYSISTECHNICAL UNIVERSITY OF DENMARK DTU Sequence motifs, information content, logos, and HMM’s Morten Nielsen, CBS,
Cross validation, training and evaluation of data driven prediction methods Morten Nielsen Department of Systems Biology, DTU.
Introduktion til Bioinformatik Hold 01 Oktober 2010.
Psi-Blast Morten Nielsen, CBS, BioCentrum, DTU. Objectives Understand why BLAST often fails for low sequence similarity See the beauty of sequence profiles.
Environmental Life Cycle Assessment PSE 476/WPS 576/WPS 595-005 1 Fall 2014 Richard A. Venditti Forest Biomaterials North Carolina State University Raleigh,
The fast way Morten Nielsen BioSys, DTU. The fast algorithm (O2) Database (m) Query (n) Open a gapExtending a gap P Q Affine gap penalties.
Gibbs sampling Morten Nielsen, CBS, BioSys, DTU. Class II MHC binding MHC class II binds peptides in the class II antigen presentation pathway Binds peptides.
Rigorous solution to the general problem of calculating sensitivities to local variations –Extended to include local variations in N s, , B as well as.
