USDA110NC6USDA122NC4NK2USDA124USDA6T7T9
USDA110NC6USDA122NC4NK2USDA124USDA6T7T9
110
122
6
B. japonicum strains Genome
type
TNFNNCLNCSNCRNCNTDWNDW
TNFNNCLNCSNCRNCNTDWNDWPlant parameter
TNFNNCLNCSNCRNCNTDWNDW
Profile DC B Ain USDA110 genome
ABCDProfile
Variable regions Core regions
Supplemental figure 1. Schematic presentation of variable regions of B. japonicum USDA110 genome.Missing region and positive correlation were expressed as red and green colors, respectively. Abbreviations of plant parameters were described in the legend of Figure 5.
USDA110
CGH009
ORS278
BTAi1
6.7
5.6
4.7 5.4
6.6
3.5
Supplemental figure 2A. Schematic presentation of distance based on synteny density of the genomes of Bradyrhizobium japonicum USDA110 (Kaneko et al, 2002), Rhodopaeudomonas palustris (Larimer et al, 2004), and Bradyrhizobum sp. BTAi1 and ORS278 (Giraud et al, 2007) . Genome synteny analysis between B. japonicum USDA110, Bradyrhizobium sp. BTAi1, ORS278 and R. palustris CGA009 were performed by the G-InforBio software (WFCC-MIRCEN World Data Centre for Microorganisms, Shizuoka, Japan). Parameter sets in this analysis were as follows: minimum percent identity, 80%; minimum alignment length, 100 bp; maximum mismatch, 50%; and maximum gap opening, 20 bp.
Distance =2nAB
SA + SB
SA :Genome size of bacterium A (kb)
SB :Genome size of bacterium B (kb)
nAB :Number of alignment between A and B
Bradyrhizobium japonicum
Rhodopseudomonas palustris
Bradyrhizobum sp.
9.1 Mb
8.3 Mb5.6 Mb
7.5 Mb
(kb/alignment)
Supplemental figure 2B. Synteny plot among Bradyrhizobium japonicum USDA110 (Kaneko et al, 2002), Rhodopaeudomonas palustris (Larimer et al, 2004), and Bradyrhizobum sp. BTAi1 and ORS278 (Giraud et al, 2007). White arrowheads are GI positions on B. japonicum USDA110 genome.
Supplemental figure 2C. Synteny plot among Rhodopaeudomonas palustris (Larimer et al, 2004), and Bradyrhizobum sp. BTAi1 and ORS278 (Giraud et al, 2007) .
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