Download - Molecular visualization for the masses: Virtual model kits to virtual playgrounds

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Page 1: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

Molecular visualization for the masses: Virtual model kits to

virtual playgroundsRobert M. Hanson, Erik Wyatt (St. Olaf College)

Hai Nguyen (Carleton College)BCCE 22

Penn State UniversityWednesday, Aug. 1, 2012

Page 2: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

Tom Newton,U. So. Maine.

Thanks for the greatcollaboration!

Otis Rothenberger,Ill. State

MarkusSitzmann,NCI-NIH

Carl BattCornell Univ.

Page 3: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

Hens BorkentRadboud Univ.,Netherlands

Thanks for the greatcollaboration!

Paul Pillot,Académie de Nice

Amanda Leone,St. Olaf

RobertLancashire,U. West Indies

Page 4: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

Hai NguyenCarleton ’13

Thanks for the greatcollaboration!

Erik WyattSt. Olaf ‘14

Craig MartinU. Mass. Amherst

Adam WilliamsonU. Mass.

Page 5: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

Web-base molecular visualization

molecular orbital viewervirtual model kitmolecular playgroundnew ideas for teaching spectroscopy

Page 6: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

Web-base molecular visualization

molecular orbitals

Page 7: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

Molecular Orbitals (Including Linear Combinations)

http://chemapps.stolaf.edu/jmol/mo

Page 8: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

Molecular Orbitals (Including Linear Combinations)

http://chemapps.stolaf.edu/jmol/mo

Page 9: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

Molecular Orbitals (Including Linear Combinations)

http://chemapps.stolaf.edu/jmol/mo

Page 10: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

Molecular Orbitals (Including Linear Combinations)

http://chemapps.stolaf.edu/jmol/mo

Page 11: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

CheMagic O=Chem VMK

http://chemagic.com/vmk

Page 12: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

CheMagic O=Chem VMKMolecular Editor

http://chemagic.com/vmk

Page 13: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

CheMagic O=Chem VMKStructure Drawing

JME applet by Peter Ertl, Novartis, Basel, Switzerland

http://chemagic.com/vmk

Page 14: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

Infinite Model Collection

http://chemapps.stolaf.edu/jmol/modelkit

Page 16: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

http://chemapps.stolaf.edu/jmol/modelkit

Page 17: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

http://chemapps.stolaf.edu/jmol/modelkit

Page 18: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

http://chemapps.stolaf.edu/jmol/modelkit

Page 19: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

http://chemapps.stolaf.edu/jmol/modelkit

Page 20: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

http://www.molecularplayground.org/

Page 21: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

Google: bobjmol molecular playground

Page 22: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

Google: bobjmol molecular playground

Page 23: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

Structure/Spectrum Correlation

http://chemapps.stolaf.edu/jmol/jspecview/jsvtest.htm

Page 24: Molecular visualization for the masses: Virtual model kits to virtual playgrounds

http://chemapps.stolaf.edu/nmr/viewspec2

Spectral Analysis Using JSpecView