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Transcript of Www.boldsystems.org BARCODE OF LIFE DATA SYSTEMS (BOLD) Riadul Mannan Biodiversity Institute of...
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www.boldsystems.org
BARCODE OF LIFE DATA SYSTEMS (BOLD)
Riadul MannanBiodiversity Institute of Ontario
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www.BOLDSYSTEMS.org
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1 Architect, 2 Hardware Engineers
4 Programmers, 4 Data Managers
BOLD SYSTEMS450 CPUs, 100TB storage
Generator powerRemote backup
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Barcode Records for Fungi , Protists, Plants and Animals 834.5Kspecimens, 69.6K species, 2.1K institutions : 5.1K users
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Features of BOLD
Quality AssessmentsPrimer Registry
Alignment Viewer/EditorIntegrated Help
Taxon ID TreeDistance Summary
Sequence CompositionNearest Neighbour Summary
Accumulation CurvesMulti-Marker ID Engine
Bibliography SupportWeb Service API
Workflow *Analytics Integration
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Specimen
Tissue Sample
ExtractDNA
PCR Amplify Sequence
Photograph
Collection Data
Web-Accessible Data andDNA Barcode
The Analytical Chain
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Specimen
Taxonomy
Identifier
IDs
Institution
Collectors
Desc.
Lat/Lon
Country
Collection
Lab Data
Trace
Primers
Audit Trail
Marker 1
DNAMarker 2
Markers 3Caption
Metadata
Copyright
Image/Video
Literature
BOLD Data Model
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BOLD Multi-Marker Data
Tag Cloud of markers
Total Markers on BOLD : 45
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Project Management
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Data ManagementSpecimen Sequence
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Data Management
1 2
3
4
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Primer Registry
Total Primer – 633Public – 325Private – 308
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Data Analysis & Visualization
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Sequence Analysis - Taxon ID Tree
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Alignment Browser
Features:Flexible labeling
Variability of positionsMapping amino acids
Future Features:Highlighting diagnostic positionMapping to secondary structuresWeb based sequence editing
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Identification System
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Managing Lab Data - LIMS
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LOCATING SAMPLES
OwnerSample TypeSampleidsProcessidsKeywordsMicroplate Label
Sample Lookup
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Controlling Liquid Handling Robots
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PCR Success Report
Gel image
Sliced by system
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Management And Monitoring
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LIMS - Non Lab User
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Data Publication
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