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Why aren't we there yet?
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Slides from 30 minute talk given at Biodiversity Informatics meeting in Stockholm, 3 Decemer 2008
Transcript of Why aren't we there yet?
Biol. J. Linn. Soc. 80 (4) 699-715 (2003)
http://bioguid.info/openurl/
doi:10.1111/j.1095-8312.2003.00274.x
Following the links
Identifiers
Resolvable
Shared
NCBI
2006
Cites
2006
Forward Cites
2006 2008
Where do we stand?
Lack of identifiers
Too many identifiers
uBio urn:lsid:ubio.org:namebank:2072956
Catalogue of Life urn:lsid:catalogueoflife.org:taxon:f3b7cf14-29c1-102b-9a4a-00304854f820:ac2008
The World Spider Catalogue urn:lsid:amnh.org:spidersp:019664
Dolomedes tenebrosus Hentz, 1844
http://ispiders.blogspot.com
Non-standard identifiers
urn:nbn:se:uu:diva-3634
Life Science Identifiers
(LSIDS)
urn:lsid:zoobank.org:pub:3F97F9F1-3156-4D30-AD7C-1F5BF51DD609
<?xml version="1.0"?><rdf:RDF> <PublicationCitation:PublicationCitation rdf:nodeID="urn:lsid:zoobank.org:pub:3F97F9F1-3156-4D30-AD7C-1F5BF51DD609"> <PublicationCitation:publicationType rdf:resource="JournalArticle" /> <PublicationCitation:parentPublication rdf:resource="urn:lsid:zoobank.org:pub:4BE0C73B-4560-40ED-83F8-1FA72D588990" /> <ns:identifier>urn:lsid:zoobank.org:pub:3F97F9F1-3156-4D30-AD7C-1F5BF51DD609</ns:identifier> <PublicationCitation:authorship>Polaszek, Andrew, …</PublicationCitation:authorship> <PublicationCitation:year>2005</PublicationCitation:year> <PublicationCitation:title>Commentary: A universal register for animal names</PublicationCitation:title> <PublicationCitation:parentPublicationString>Nature</PublicationCitation:parentPublicationString> <PublicationCitation:volume>437</PublicationCitation:volume> <PublicationCitation:pages>477</PublicationCitation:pages> </PublicationCitation:PublicationCitation> <PublicationCitation:PublicationTypeTerm rdf:about="JournalArticle" /> <PublicationCitation:PublicationCitation rdf:about="urn:lsid:zoobank.org:pub:4BE0C73B-4560-40ED-83F8-1FA72D588990" /></rdf:RDF>
doi:10.1038/437477a
failure to reuse existing identifiers
data silo
dead end
Kanakysaurus viviparus
doi:10.1670/196-03A
failure to reuse existing identifiers
Distributed data
bioguid.info/status/
SmithsonianNational Museum of Natural History
4 days
4 days
90 days
GBIF Portal(data.gbif.org)
4 days
Where we stand• Too few identifiers• Too many identifiers• Idiosyncratic choice of identifier (LSID)• Failure to reuse existing identifiers (DOI)• Poor stability of services• Errors with no easy means of fixing them
