Visualization of CRAN Package Dependency Network · 2020. 12. 18. · RPyGeo RSAGA RQDA RQuantLib...
Transcript of Visualization of CRAN Package Dependency Network · 2020. 12. 18. · RPyGeo RSAGA RQDA RQuantLib...
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Visualization of CRAN Package Dependency Network
Visualization of CRAN Package DependencyNetwork
Group 3: X Zhang, X Chen, W Qiwen, N Xiao
2010 PKU Vis Summer School
August 18, 2010
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
Slides now available at:
http://vis.pku.edu.cn/wiki/
Public Courses ⇒ Summer School s10 ⇒ Group 3
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
Outline
1 Why
2 How
3 What we got
4 Reference
5 Appendix
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
Why
What is CRAN?
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
Why
Comprehensive R Archive Network
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
Why
CTAN: Comprehensive TeX Archive Network
CPAN: Comprehensive Perl Archive Network
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
Why
Why needs to be VISUALIZED?
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
Why
1 Real world data beside us
2 Strengthen the open source community
3 Has never been VISUALIZED before
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
How
Data Extracted from CRAN:Raw Text.
After Pre-Processing:1805 Nodes, 4020 Edges.Now available at Vis wiki.
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
How
Tools:
1 Pajek (1996)2 Gephi (2008)3 Network Manipulator (McGuffin, 2009)
Why not R
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
1 Basic SNA
2 “Big Picture”
3 Manual Analysis
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Basic SNA
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Figure: Output Degree of the Network
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Basic SNA
Diameter:stats ⇒ tossm
Distance: 5.
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Basic SNA
Clustering Coefficients:
CC (i) =2E1(i)
(ki (ki − 1))
CC =
∑Ni=1 CC (i)
N
For this network: CC = 0.0697
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Hubs and Authority
Figure: Hubs
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Hubs and Authority
Figure: Authority
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
“Big Picture”
stats
AER
car
Formula
lmtest
sandwichstrucchange
survival
zoo
ldboundsAGSDest
gpclib
AIGIS
AIM
nnls
ALS
Iso
methods
AcceptanceSampling
mvtnorm
AdMit
SemiParAdaptFit
MASS
nlme
cluster
foreign
Amelia
utils
tcltk
AnalyzeFMRIR.matlab
fastICA
minpack.lm
AquaEnv
deSolve
ArDec
numDeriv
B2Z
coda
emulator
BACCOcalibratorapproximator
BAMD
digest BARD
BAS
BAYSTAR
BB
limSolveBCE
BLCOP
quadprog
SuppDistsBLR
BMA
leaps
e1071
BSDA
BSagri
multcomp
gamlss
mratios
MCPAN
pairwiseCI
lattice
geepack
boot
R2WinBUGS
BTSPAS
splines
actuar
BRugs
bayesmBaM
mice
nnet
BayHaz
BayesDA
BayesPanel
BayesQTLBIC
BayesTree
akima
BayesX
shapefiles
hdrcde
BchronsvDialogs
network
Bergm
ergm
RCurl
BioIDMapper
XML
gWidgetsRGtk2
snow
BioPhysConnectoR
matrixcalc
vegan
BiodiversityR
deldir
BiplotGUI
rgl
tcltk2
tkrplot
Bmix
BootPR
combinat
randomForest
Boruta
Brobdingnag
graphics
dynlm
CADFtest
tseries
urca
JGR
CADStat
bio.infer
gdata
gmodels
quantreg
rpart
rJava
fda
CCA
fields
mclust
CCMtools
class
tree
CHNOSZ
mixdistCNVassoc
drCOP
CORREP
mgcv
COZIGAM
CPE
Design
wavethresh
CVThresh
EbayesThresh
cobs
CalciOMatic
grDevices
CarbonEL
gamCausalGAM
R.oo
CellularAutomaton
Hmisc
ChainLadder
Matrixsystemfit
CircNNTSR
CircSpatial
CircStats
geoR
RandomFields
spam
sp
CoCoCg
CoCo
dynamicGraphCoCoGraph
CollocInfer
odesolve
SparseM
ConvergenceConcepts
CorrBin
CoxBoost
prodlim
Cprob
tpr
DAAG
limmaDAAGbio
relations
DAKS
sets
effectsDAMisc
sm
rpanel
DBI
DCluster
spdep
RBGL
DOSim
graph
DPpackage
impute
DRI
cghFLasso
spatstat
DSpat
DatABEL
DeducerDeducerPlugInExample
ggplot2
Depela
stats4
copula
grid
DescribeDisplay
reshape
proto
DesignPatterns
epitools
DiagnosisMed
TeachingDemos
AMORE
DiceKrigingDiceEval
DiceOptim
rgenoud
DierckxSpline
PolynomF
DoE.base
relimp
vcd
FrF2
DoE.wrapper
rsmlhsDiceDesign
AlgDesign
DoseFinding
EDR
EMCC
EMC
EMD
ttutilsEMTEQL
EffectiveDose
locfit
ElemStatLearn
FactoMineR
EnQuireR
SensoMineR
Rcmdr
EngrExpt
Epi
lme4
EquiNorm
setRNG
EvalEst
tframe
dse
mnormt
FAMT
FAiR
rrcov
ade4
FD
ape
geometry
FEST
kinship
hapsim
ltsaFGN
FME
rootSolve
corpcor
FRB
FSelector
RWeka
FTICRMS
FactoClass
xtable
ellipse
scatterplot3d
Fahrmeir
FieldSim
RColorBrewer
FinTS
FitAR
FrF2.catlg128
BsMD
igraph
sfsmisc
FunCluster
FunNet
sna
Cairo
FunctSNP
RSQLite
G1DBN
GAMens
geomapdata
GEOmap
RPMGsplancs
VGAM
GEVcdn
multtestGExMap
GGMselect
lars
mvbutils
gtools
GGally
GLDEX
GLMMarp
MCMCpack
msm
accuracy
panelbayesSurv
sn
GOFSN
GO.dbGOSim
AnnotationDbi
annotate
topGO
flexmix
org.Hs.eg.db
GRRGI
arm
GSM
gee
GWAF
GenABEL
KernSmooth
GenKern
GeneCycle
longitudinal
fdrtool
GeneNet
GeneReg
Geneclust
spatial
Geneland
mapproj
maps
DistributionUtilsGeneralizedHyperbolic
GeoXp
mvoutlier
robustbase
GrassmannOptim
codetoolsGridR
Guerry
psych
HDMD
base
debug
HFWutils
HGLMMM
HH
HSAUR2
HSAUR
R2HTMLHTMLUtils
HWEBayes
HWEintrinsic
getopt
HadoopStreaming
Haplin
HaploSim
HardyWeinberg
HybridMC
HydroMe
xts
IBrokers
ICE
ICEinfer
ICSNPICS
survey
IDPmisc
haplo.statsIFP
qcc
IQCC
micEcon
ISA
tools
Icens
IsoGene
affy
ff
JavaGD
iplots
fCopulae
JJcorr
JM
Rsolnp
JOP
JointModeling
KMsurv
LDdiag
LDheatmap
LIM
diagram
LLdecomp
gRain
Biobase
LMGene
moments
LambertW
gsl
nortest
LogConcDEAD
LogicReg
LoopAnalyst
MADAM
qvalue
RankProdGeneMeta
gplots
genefilter
MAMAmetaArray
tspair
metaMA
OrderedList
annaffy
MARSS
time
party
MAclinical
plsgenomics
st
MBA
stashR
MCAPS
MCMCglmm
tensorA
pscl
orthopolynom
MCMChybridGP
MCPMod
MChtest
MEMSS
gss
MFDA
MFDF
MKmisc
MLCM
MLDS
MNM
SpatialNP
MNP
cclustMOCCA
clv
MSBVAR
bit
MVpower
pamr
kernlab
MaXact
MarkedPointProcess
MasterBayes
genetics
MatchIt
Matching
Mcomp
forecast
MetabolAnalyze
Metabonomic
gpls
pls
clusterSim
hddplotwaved
caTools
statmodMiscPsycho
MixSim
ModelMapgbmPresenceAbsence
rgdal
svcmMortalitySmooth
gsubfn
MplusAutomation
plyr
NADA
NISTnls
NMF
NMMAPSlite
Rwave
NMRS
NRAIA
NeatMap
NestedCohort
NetCluster
NetIndices
OjaNP
OligoSpecificitySystem
Oncotree
eha
OrdFacReg
PASWR
PBSmodelling
PBSadmb
PCS
adimpro
PET
PK
PKfit
RGtk2
PKgraph
rggobi
gWidgets
PKmodelFinder
cairoDevice
PKtools
PMA
PSM
ucminf
tensorPTAk
TSP
PairViz
PerformanceAnalytics
LBEPhViD
Pomic
PowerTOST
ProDenICA
ProbForecastGOP
PwrGSD
QCAGUI
QCA
lpSolve
QRMlib
fSeries
chron
QTLNetworkR
QT
SASxport
R.methodsS3
R.cache
R.utils
R.filesets
R.huge
R.rsp
R2Cuba
rcom
R2PPT
R2jags
rjags
R2wd
rscproxy
RDCOMClientRBloomberg
RC
REEMtree
REQS
RExcelInstaller
RFA
RFLPtools
RFOCRSEIS
RFinanceYJ
RFreak
RGraphics
RGtk2DfEdit
RH2
RJDBC
RHRV
RHmm
RImageJ
Rcpp
RInside
RItools
RLMM
RLadyBug
RLastFM
RM2
RMySQL
RNCBIAxis2LibsRNCBIEUtilsLibs
RNCBI
ROCR
RODBCRODM
ROptEstOld
distr
distrEx
RandVar
ROptEst
distrModRobAStBase
ROptRegTS
RPMM
RPPanalyzer
RPostgreSQL
RPyGeo
RSAGA
RQDA
RQuantLib
RSQLite.extfuns
rjson
RSearchYJ
RSiena
brewRSiteSearch
sos
RSurvey
tripack
RTOMO
RTisean
RUnit
RWebMA
RWinEdt
RXshrink
startupmsg
RankAggreg
RaschSampler
Rassoc
Ratings
Rcgmin
RcmdrPlugin.DoE
RcmdrPlugin.Export
RcmdrPlugin.FactoMineR
RcmdrPlugin.HH
RcmdrPlugin.IPSUR
RcmdrPlugin.MAc
MAc
RcmdrPlugin.MAd
MAd
RcmdrPlugin.PT
poistweedie
RcmdrPlugin.SLC
SLC
RcmdrPlugin.SurvivalT
RcmdrPlugin.TeachingDemos
RcmdrPlugin.doex
RcmdrPlugin.epackabind
RcmdrPlugin.orloca
orloca
orloca.es
RcmdrPlugin.qcc
RcmdrPlugin.qual
RcmdrPlugin.sos
RcmdrPlugin.steepness
steepness
RcmdrPlugin.survival
date
RcppArmadillo
RcppExamples
ReacTran
shape
RecordLinkage
ada
ipred
evd
ResearchMethods
irr
Rfwdmv
slam
Rglpk
RgoogleMaps
Rlab
Rlabkey
Rmpfr
RobLoxBioC
beadarray
RobLox
RobRex
Rpad
RpgSQL
Rsac
Rsge
truncnorm
RthroughExcelWorkbooksInstaller
Runuran
Rvelslant
Rvmmin
RxCEcolInf
Ryacas
SDDA
adehabitat
SDMTools
SDaA
roxygen
SDisc
SEL
SEMModComp
SGCS
SGP
SHARE
SMIR
SMPracticals
SNPMaP
SNPMaP.cdmaffxparser
SNPassoc
SNPmaxsel
SPACECAP
SPOT
maptree
colorspace
SQLiteDF
SQLiteMap
maptools
SQN
nor1mix
SRPM
SSSR
STAR
SWordInstaller
SciViews
ScottKnott
SenSrivastava
SiZer
SimpleTable
SkewHyperbolic
SoDA
SpatialEpi
SpatialExtremes
SpectralGEM
optmatch
SpherWave
StMoSim
StatDA
pixmapStatDataML
StatFingerprintsffmanova
labdsv
sciplot
som
proxy
StatMatch
Stem
StreamMetabolism SubpathwayMiner
SweaveListingUtils
SyNet
Synth
TANOVA
TGUICore
TGUITeaching
TIMP
gclus
TSA
TSMySQL
tframePlus
TSdbiTSPostgreSQL
TSSQLite
TSfame
fametis
TShistQuote
TSodbc
TTR
TinnR
ToxLim
TraMineR
TreePar
TreeSim
TreeRank
coin
geiger
TwoWaySurvival
TwslmSpikeWeight
USPS
UScensus2000
UScensus2000tractUScensus2000cdp
UScensus2000add
UScensus2000blkgrp
Zelig
VDCutil
VHDClassification
VIMvcdutils
VLMC
VarianceGamma
VecStatGraphs2D
VhayuR
VizCompXmlegp
WDI
WMCapacity
waveslim
WaveCD
WhatIf
YaleToolkit
YourCast
aCGH.Spline
adabag
mlbenchadaptTest
ade4TkGUI
adegenet
adephylo
phylobase
adlift
biglm
allan
alphahull
sgeostat
ofp
amba
amer
anacor
analogue
anchors
anesrake
animation
clim.pact
anm
ant
aod
apcluster
aplpack
apsrtable
aqp
archetypes
modeltools
aroma.affymetrix
aroma.core
aroma.light
aroma.apd
aroma.cn
matrixStats
arrayImpute
matlabgnm
arrayMissPattern
arules
arulesNBMiner
plotrix
asbio
ascii
asd
aspace
trustaster
asuR
asypow
atmi
automapgstat
aws
aylmer
partitions
richardsbackfitRichards
backtest
snapCGHbayesCGH
bayesGARCH
smoothSurv
runjagsbayescount
bayesmix
bbmle
bcp
foreach
bdsmatrix
bear
benchmark
bestglm
betaper
betareg
bfast
biOpsGUI
biOps
biclust
bifactorial
biganalytics
bigmemory
biglars
bigtabulate
bild
bimqtl
binMto
bindata
binhf
binombinomSamSize
bipartite
birch
bootstrap
bisoreg
monreg
biwt
blighty
blockTools
nbpMatching
drcbmd
bnlearn
boolean
boolfun
bootRes
bootStepAIC
bootspecdens
bpca
brainwaver
profileModelbrglm
bs
bvpSolve
caGUI
ca
PROcesscaMassClass
bitops
filehash
cacheSweave
calib
candisc
heplots
caret
catnet
cba
ccems
cellVolumeDist
celsius
cem
cggd
changeLOS
chemometrics
pcaPP
choplump
chplot
circular
clValid
kohonen
classGraph
Rgraphviz
classInt
classifly
ncdf
clinfun
clues
clustTool
fpc
flexclust
cluemvpart
compositionsclusterCons
clusterGeneration
clusterfly
clustvarsel
cmprsk
cmrutils
coarseDataTools
cocorresp
codep
coenoflex
colbycol
compoisson
condGEE
cond
contrast
metacopas
pspline
coxme
coxphf
coxphw
coxrobust
cramer
crawl
pcaMethodscrmn
crossdes
margcsampling
cshapes
cthresh
ctv
curvetest
cwhmisc
cxxPack
cyclones
dae
datamap
dcemriS4
dcemri
dclone
ddst
denprodelt
depmixS4
depmix
depth
descr
desirability
loglognormdesire
dglm
dice
difR
ltm
diffusionMap
digeR
ReadImagesdigitize
diseasemapping
distory
distrDoc
distrSim
distrTEst
distrTeach
distrEllipse
distributions
divagis
diveMove
dlmapibdregwgaim
dlnm
doBy
rredisdoRedis
iterators
doSNOW
oro.nifti
dpmixsim
magic
drfit
dse1
dse2
dti
fmri
dtw
wmtsadvfBm
lpridgedynCorr
dynGraph
dyn
ggm
dynamicTreeCut
eRm
eVenn
earth
ecespa
eco
ecodist
ecolMod
mapdata
seacarb
edrGraphicalTools
egonet
eiPack
elasticnet
elliptic
elrm
emdbook
emme2
emplik
emu
endogMNP
energy
ensembleBMA
epicalc
eqtl
equivalence
esd4all
etm
evir
exact2x2
exactci
exactRankTests
exactmaxsel
exams
mboost
expectreg
experiment
expert
expm
expsmooth
extRemes
ismevLmoments
extracat
extremevalues
gWidgetstcltk
ez
fArma
timeDate
timeSeries
fBasics
fAsianOptions
fOptions
fAssets
fBonds
fCalendarfUtilities
fEcofin
fCertificates
fExoticOptions
fExtremes
fGarch
fTrading
fImport
fMultivar
fNonlinear
fPortfolio
fRegression
polspline
fUnitRoots
far
farmR
favir
pbatRfbatifgui
rainbow
fds
fdth
feature
ks
fechner
filehashSQLite
fingerprint
fisheyeR
fishmethods
fit4NM
flexCrossHaz
flubase
fma
fracdiff
forensic
forensim
formatR
hashformula.tools
forward
fossil
fpca
splus2R
fractal
ifultoolssapa
futile.any
fractalrock
futile.logger
quantmod
frailtypack
frbf
plm
frontier
miscTools
fts
ftsa
futile.optionsfutile.matrix
futile
fxregime
gRbase
gRapHD
gRc
gWidgetsWWW
gWidgetsrJava
nwsgamesNws
gamlss.add
gamlss.util
gamlss.cens
gamlss.demo
gamlss.tr
gamlss.mx
gamlss.nl
gamlss.dist
gamlss.data
gamm4
gbev
gbs
gcExplorer
survrecgcmrec
ouch
gene2pathwayKEGG.db
biomaRtKEGGSOAP
org.Dm.eg.db
geneARMA
survcomp
genefu
amap
genoPlotR
genomatic
geoRglm
geofd
geonames
geophys
geosphere
geozoo
tourr
ghyp
giRaph
glmc
glmdm
LearnBayes
glmmAK
glmmBUGS
glmnet
glmulti
gmaps
gmm
gmvalid
gnumeric
goalprog
gof
gogarch
grImport
graphicsQC
grasp
mda
gregmisc
gridBase
gridExtra
grouped
grplasso
gsDesign
gsc
haarfisz
hapassoc
haplo.ccs
hbim
hbmem
ash
helloJavaWorld
hergm
hett
hexbin
hgam
hier.part
highlightparser
hlr
homals
homtest
hopach
hotspots
hts
hybridHclust
playwithhydrosanity
hyperSpec
hyperdirichlet
contfrachypergeo
iBUGS
sendplotiGenomicViewer
ibr
ic.infer
kappalab
ic50
ifa
ig
iid.test
inline
imprProbEst
ineq
influence.ME
inlinedocs
spcosa
intamapInteractive
intamap
intcox
integrativeMEmixOmics
intervalperm
MLEcens
intervals
introgress
ipptoolbox
triangle
ipw
irtProb
irtoys
isa2
isopam
itertools
its
ivivc
kernelPop
kin.cohort
klaR
klin
km.ci
kmi
mitools
kml3d
misc3d
kml
longitudinalData
knorm
kst
polynomkzft
kzs
laeken
lancet.iraqmortality
languageR
zipfR
laser
latentnetshapes
latticeExtra
latticedl
latticist
lavaan
lawstat
lcd
poLCAlcda
lda.cv
leiv
linprog
list
lmeSplines
lmec
lmomlmomRFA
lmomco
localdepth
locfdr
lodplot
logilasso
logistf
longRPart
lordif
polycor
lossDev
logspline
Snowballlsa
lspls
lss
luca
lvplot
mAr
mFilter
magnets
mapLD
mar1s
marelac
marelacTeaching
marginTree
marginalmodelplots
maticce
maxstat
mbmdr
mc2d
mcclust
mclogitmemisc
mcmcplots
mcsm
meboot
mecdf
mediation
meifly
SMVar
rmetametacor
metafor
mfp
mhsmm
mi
micEconAids
micEconCESDEoptim
micEconSNQP
np
migui
mimR
infotheominet
miniGUI
minqa
mirf
missMDA
mixAK
mixPHM
mix
mixer
mixlow
mixsmsn
mixstock
mixtools
mkin
mlmRev
mlogitBMA
maxLik
mlogit
mmcm
mmlcr
modTempEff
moduleColor
mombf
mondate
monoProc
monomvn
mpm
mrdrc
msBreast
msDilution
msProcess
robust
msProstate
mseq
mspath
mstate
mtsc
muRL
muS2RCmuUtilmuStat
mugnet
multcompView
multilevel
multinomRob
multipol
multmod
munfold
munsell
mvShapiroTest
mvabund
mvna
mvngGrAd
mvnormtest
mvsf
mvtBinaryEP
nFactors
nacopula
optimbase
neldermeadoptimsimplex
netmodels
networksis
neuralnet
nlADG
nlmeODE
nlreg
alr3
nlrwr
nls2
nlstools
nlt
nltm
nnDiag
spBayes
yaImpute
nodeHarvest
noia
nonparaeff
pwt
nonrandom
cubature
nparLD
nparcomp
npmc
npmlreg
nsRFA
oblique.tree
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odfWeave
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ofw
onemap
optBiomarker
optparse
optpart
ordinal
orientlib
orth
orthogonalsplinebasis
subplex
oz
p3state.msm
pARccs
pGLS
pROC
packClassic
packS4
packdep
paleoMAS
paltran
pamctdp
pamm
paran
parcor
ppls
vioplotparviol
pastecs
pcalg
pcurve
pec
pedantics
pedigree
pedigreemm
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penalizedSVM
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snowfall
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pgam
pgfSweave
tikzDevice
pgs
phangorn
pheno
phmm
phybase
phyclust
phyloclim
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plRasch
plgp
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plink
plotpc
plspm
plus
pmg pmml
polySegratio
polySegratioMM
polysat
pomp
popPK
portfolioSim
portfolio
powerMediation
prabclus
prefmod
prim
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profr
proptest
pseudo
psgp
psychometric
psychotree
psyphy
ptinpoly
qAnalyst
qgen
qlspack
qpcR
qtlbim
qtlbook
qualV
qualityTools
quantchem
outliers
Defaults
quantregForest
r2dRue
r2lh
r4ss
rEMM
rSymPy
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random.polychor.pa
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rngWELLrandtoolbox
rangeMapper
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rattle
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relaimpo
relax
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repolr
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FITSio
ringscale
rimageripa
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rrp
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lpSolveAPIsafeBinaryRegression
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PBSddesolve
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polyapost
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GeneticsBasesnp.plotter
sparkTable
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speedglm
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Kendallzyp
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
“Big Picture”
Gephi project and PDF(Vector) Version also available at Vis wiki.
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Force Directed Layout
Figure: Force Directed Graph by GUESS
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Manual Analysis: Most Important Packages
Figure: Manual Analysis: Most Important Packages (1)
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Figure: Manual Analysis: Most Important Packages (2)
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Figure: Manual Analysis: Most Important Packages (3)
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Figure: Manual Analysis: Most Important Packages (4)
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Figure: Manual Analysis: Most Important Packages (5)
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Figure: Manual Analysis: Most Important Packages (6)
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Figure: Manual Analysis: Most Important Packages (7)
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Figure: Clustering Result by MCL
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
What we got
Future Jobs
1-mode ⇒ 2-mode
Authors + Packages
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
Reference
Reference
R Development Core Team (2010). R: A language and environmentfor statistical computing. R Foundation for Statistical Computing,Vienna, Austria. ISBN 3-900051-07-0, http://www.R-project.org.
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Questions?
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
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Visualization of CRAN Package Dependency Network
Appendix
Thanks
Group 3: X Zhang, X Chen, W Qiwen, N Xiao Visualization of CRAN Package Dependency Network
WhyHowWhat we gotReferenceAppendix