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US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS.
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Transcript of US GBIF Tools and Services August 12 th, 2010 Giri Palanisamy NBII, ORNL Mike Frame NBII, USGS.
US GBIF Tools and Services
August 12th , 2010
Giri PalanisamyNBII, ORNL
Mike FrameNBII, USGS
Giri PalanisamyNBII, ORNL
Mike FrameNBII, USGS
NBII-GBIF Services
• Hosts GBIF mirror for North America • Various data extraction services and visualizations• IPT prototype installation• Trainings/Workshops on DiGIR and IPT• Operates UDDI service• Supports several Cooperative agreements at
Museum’s & Herbaria in US
GBIF Data Portal
GBIF Site: http://data.gbif.orgU.S. Mirror: http://us.mirror.gbif.org
World: - 201,275,468 occurrence records - 318 data providers
USA: - 83,607,198 records - 91 data providers
Web services to query GBIF data
OGC web services:• Taxon data service: http:// us.mirror.gbif.org/ws/rest/taxon
• Occurrence record data service: http:// us.mirror.gbif.org/ws/rest/occurrence
• Occurrence density data service: http:// us.mirror.gbif.org/ws/rest/density
• Dataset metadata service: http:// us.mirror.gbif.org/ws/rest/resource
• Data provider metadata service: http:// us.mirror.gbif.org/ws/rest/provider
• Data network metadata service: http:// us.mirror.gbif.org/ws/rest/network
• More information: http://wiki.gbif.org/dadiwiki/wikka.php?wakka=DeveloperAPIs
• Web services to query US GBIF data (under development)
GBIF Data Analysis And Extractions for NBII Partners
• Example GBIF Data Extractions:– Extract data for specific State(s), countries.– Extract data for list of species (plants, birds,
butterflies etc..)
GBIF Data Analysis Extractions Cont..
NBII Customized widgets for exploring GBIF data
GBIF Widget for Vermont Area
• Based on NBII CH/Lucene/Solr index
• Species occurrences query– http://nbii-gbif.ornl.gov/us_solr/select?
indent=on&version=2.2&q=scientific_name%3A%22Abildgaardia ovata%22&start=0&rows=100&fl=latitude%2Clongitude&qt=standard&wt=standard&explainOther=&hl.fl=
Web Services to Query US GBIF Data
Simple Web Services Client to get occurrence counts
http://mercury.ornl.gov/gbifUtility/
• GBIF collection metadata records (EML) are now available in the NBII metadata clearinghouse and in the NBII catalog search.
• IPT prototype installation available in the NBII servers (for testing prupose)
• Other NBII-GBIF services
• Species Level xml files for NBII Catalog search
GBIF Species Records in NBII Catalog Search
• NBII Search screen with GBIF records here……
• Provide various easy-to-use visualization tools and web services for extracting NA GBIF data (local, state, regional, country, and thematic level)
• Enable county level GBIF data visualization and extraction
• Extend the collaboration activities with new projects such as USVH, DataONE etc..
• Enable species mashups on the NBII metadata records
• Evaluate broader services for all GBIF data
• Current and future tasks