Tools of the Trade Laboratory Notebook Objectives of a Good Lab Notebook (a)State what was done...
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Transcript of Tools of the Trade Laboratory Notebook Objectives of a Good Lab Notebook (a)State what was done...
Tools of the Trade Laboratory Notebook
Objectives of a Good Lab Notebook(a) State what was done(b) State what was observed(c) Be easily understandable to
someone else
Laboratory Notebook
Bad Laboratory Practice (A Recent Legal Case)Medichem Pharmaceuticals v. Rolabo Pharmaceuticals
Tools of the Trade
Two Patents describe a method for making the antihistamine drug Loratidine (Claritin) - US sales of $2.7 billion - the two patents are essentially identical- Medichem sued to invalidate Rolabo patent and claimed priority- Medichem had to prove it used the method to make loratidine before Rolabo did
A co-inventor’s lab notebook was a primary piece of evidence to support Medichem’s claim- documented analysis of a sample claimed to be made using the patented method - NMR spectral data confirmed the production of loratidine
The evidence was not enough to support Medichem's claim of reduction to practice- NMR data do not show the process by which loratidine was made- lab books were not witnessed
Rolabo Pharmaceuticals won the case (and the rights to make Loratidine) because of problems with a Lab Notebook!!
Nature Reviews Drug Discovery (2006) 5, 180
Tools of the Trade ALL Measurements have an Associated Error
Essential to understand instrument limitations
- Use proper procedures to minimize source of errors- Have to accept a certain level of instrumental errors - Only counting can lack an error
Balance
Grams error mg error
500 1.2 500 0.010
200 0.5 200 0.010
100 0.25 100 0.010
50 0.12 50 0.010
20 0.074 20 0.010
10 0.050 10 0.010
5 0.034 5 0.010
2 0.034 2 0.010
1 0.034 1 0.010
Buret
Vol. (ml) Error (mL)
5 ± 0.01
10 ± 0.02
25 ± 0.03
50 ± 0.05
100 ± 0.10
Volumetric Flask
Vol. (mL) Error (mL)
1 ± 0.02
2 ± 0.02
5 ± 0.02
10 ± 0.02
25 ± 0.03
50 ± 0.05
100 ± 0.08
200 ± 0.10
250 ± 0.12
500 ± 0.20
1000 ± 0.30
2000 ± 0.50
Transfer Pipet
Vol. (mL) Error (mL)
0.5 ±0.006
1 ±0.006
2 ±0.006
3 ±0.01
4 ±0.01
5 ±0.01
10 ±0.02
15 ±0.03
20 ±0.03
25 ±0.03
50 ±0.05
100 ±0.08
Tools of the Trade Weight Measurements
1.) Methods of Weighing:(i) Basic operational rules
Chemicals should never be placed directly on the weighing pan - corrode and damage the pan may affect
accuracy - not able to recover all of the sample
Balance should be in arrested position when load/unload pan Half-arrested position when dialing weights
- dull knife edge and decrease balance sensitivity accuracy
(ii) Weight by difference: Useful for samples that change weight upon exposure to the
atmosphere- hygroscopic samples (readily absorb
water from the air)
Weight of sample = ( weight of sample + weight of container) – weight of container
(iii) Taring: Done on many modern electronic balances Container is set on balance before sample is added Container’s weight is set automatically to read “0”
Tools of the Trade Weight Measurements
2.) Errors in Weighing: Sources(i) Any factor that will change the apparent mass of the sample
Dirty or moist sample container - also may contaminate sample
- important to dry sample before weighing
Sample not at room temperature- avoid convection air currents (push/lift
pan) Adsorption of water, etc. from air by sample
Vibrations or wind currents around balance Non-level balance
Office dust
Tools of the Trade Weight Measurements
3.) Errors in Weighing: Sources(i) Any factor that will change the apparent mass of the sample
Buoyancy errors – failure to correct for weight difference due to displacement of air by the sample.
Correction for buoyancy to give true mass of sample
m = true mass of sample
m’ = mass read from balance
d = density of sampleda = density of air (0.0012
g/ml at 1 atm & 25oC)dw = density of calibration
weights (~ 8.0 g/ml)
)dd
1(
)dd
1('m
ma
w
a
Different displacement of ice and balsa wood in water
icebalsa
Volume Measurements
1.) Errors in volumes: Source (i) Always measure volume at bottom of a concave meniscus
- always fill all volumetric flasks or transfer pipettes to calibration line
(ii) always read at the same eye level as the liquid
(iii) Don’t force out last drop from pipette! (iv) Remove air bubbles
Tools of the Trade
15.46 mL 15.31 mL 1% error
Eye level View from above
Experimental Error & Data Handling Introduction
1.) There is error or uncertainty associated with every measurement.(i) except simple counting
2.) To evaluate the validity of a measurement, it is necessary to evaluate its error or uncertainty
Same Picture Different Levels of Resolution
You can read the name of the boat on the left picture, which is lost in the right picture.
Can you read the tire manufacturer?
Experimental Error & Data Handling
Both numbers have 4 significant figures
Zeros are simple place holders
Both zeros are significant figures
zero is a significant figure
Significant Figures
1.) Definition: The minimum number of digits needed to write a given value (in scientific notation) without loss of accuracy.
(i) Examples:
142.7 = 1.427 x 102
0.006302 = 6.302 x10-3
2.) Zeros are counted as significant figures only if:(i) occur between other digits in the number
9502.7 or 0.9907
(ii) occur at the end of number and to the right of the decimal point
177.930
Experimental Error & Data Handling Significant Figures
3.) The last significant figure in any number is the first digit with any uncertainty
(i) the minimum uncertainty is ± 1 unit in the last significant figure(ii) if the uncertainty in the last significant figure is ≥ 10 units, then one less
significant figure should be used.(iii) Example:
9.34 ± 0.02 3 significant figures
But
6.52 ± 0.12 should be 6.5 ± 0.1 2 significant figures
4.) Whenever taking a reading from an instrument, apparatus, graph, etc. always estimate the result to the nearest tenth of a division
(i) avoids losing any significant figures in the reading process7.45 cm
Significant Figures
5.) Addition and Subtraction(i) use the following procedure:
Express all numbers using the same exponent Align all numbers with respect to the decimal point
Add or subtract using all given digits Round off the answer so that it has the same number of digits to
the right of the decimal as the number with the fewest decimal places
Experimental Error & Data Handling
1 decimal point 12.5 x 104
2.48 x 104
+ 1.235 x 104
16.215 x 104 = 16.2 x 104
12.5 x 104
2.48 x 104
+ 1.235 x 104
1.25 x 105
2.48 x 104
+ 1.235 x 104
Experimental Error & Data Handling Significant Figures
5.) Addition and Subtraction(i) use the following procedure:
Round off the answer to the nearest digit in the least significant figure.
Consider all digits beyond the least significant figure when rounding.
If a number is exactly half-way between two digits, round to the nearest even digit.
- minimizes round-off errors Examples:
3 sig. fig.: 12.534 12.5
4 sig. fig.: 11.126 11.13
4 sig. fig.: 101.250 101.2
3 sig. fig. 93.350 93.4
Significant Figures
6.) Multiplication and Division(i) use the following procedure:
Express the answers in the same number of significant figures as the number of digits in the number used in the calculation which had the fewest significant figures.
Examples:
Experimental Error & Data Handling
3.261 x 10-5
x 1.78 5.80 x 10-5
3 significant figures
34.602.4287 14.05
4 significant figures
Experimental Error & Data Handling Significant Figures
7.) Logarithms and Antilogarithms(i) the logarithm of a number “a” is the value “b”, where:
(ii) example:
(iii) The antilogarithm of “b” is “a”
(iv) the logarithm of “a” is expressed in two parts
a = 10b or Log(a) = b
The logarithm of 100 is 2, since:100 = 102
a = 10b
Log(339) = 2.530
character mantissa
Experimental Error & Data Handling Significant Figures
7.) Logarithms and Antilogarithms(v) when taking the logarithm of a number, the number of significant figures
in the resulting mantissa should be the same as the total number of significant figures in the original number “a”
(vi) Example:
Log(5.403 x 10-8) = -7.2674
(vii) when taking the antilogarithm of a number, the number of significant figures in the result should be the same as the total number of significant figures in the mantissa of the original logarithm “b”
(viii) Example:
Antilog(-3.42) = 3.8 x 10-4
4 sig. fig. 4 sig. fig.
2 sig. fig. 2 sig. fig.
Experimental Error & Data Handling Significant Figures
8.) Graphs(i) use graph paper with enough rulings to accurately graph the results
(ii) plan the graph coordinates so that the data is spread over as much of the graph as possible
(iii) in reading graphs, estimate values to the nearest 1/10 of a division on the graph
Experimental Error & Data Handling Significant Figures
8.) Graphs(ii) plan the graph coordinates so that the data is spread over as much of the
graph as possible
(iii) in reading graphs, estimate values to the nearest 1/10 of a division on the graph
Experimental Error & Data Handling Errors
1.) Systematic (or Determinate) Error(i) An error caused consistently in all results due to inappropriate methods or experimental techniques.(ii) Results in all measurements exhibiting a definite difference from the true
value. (iii) This type of error can, in principal, be discovered and corrected.
Buret incorrectly calibrated
Experimental Error & Data Handling Errors
2.) Random (or Indeterminate) Error(i) An error caused by random variations in the measurement of a physical
quantity.(ii) Results in a scatter of results centered on the true value for repeated
measurements on a single sample.(iii) This type of error is always present and can never be totally eliminated
Random Error Systematic Error
True value
Experimental Error & Data Handling Errors
3.) Accuracy and Precision(i) Accuracy: refers to how close an answer is to the “true” value
Generally, don’t know “true” value Accuracy is related to systematic error
(ii) Precision: refers to how the results of a single measurement compares from one trial to the next
Reproducibility Precision is related to random error
Low accuracy, low precision Low accuracy, high precision
High accuracy, low precision High accuracy, high precision
Experimental Error & Data Handling Errors
4.) Absolute and Relative Uncertainty(i) Both measures of the precision associated with a given measurement.(ii) Absolute uncertainty: margin of uncertainty associated with a measurement(iii) Example:
If a buret is calibrated to read within ± 0.02 mL, the absolute uncertainty
for measuring 12.35 mL is:
Absolute Uncertainty = 12.35 ± 0.02 mL
(iv) Relative uncertainty: compares the size of the absolute uncertainty with the size of its associated measurement
(v) Example:For a buret reading of 12.35 ± 0.02 mL, the relative
uncertainty is:
ValueMeasured
yUncertaintAbsoluteyUncertaintRelative
0.2%0.16%(100)mL12.35
mL0.02y(%)UncertaintRelative
(Make sure units cancel)
1 sig. fig.
Experimental Error & Data Handling Errors
5.) Propagation of Uncertainty(i) The absolute or relative uncertainty of a calculated result can be estimated
using the absolute or relative uncertainties of the values used to obtain that result.
(ii) Addition and Subtraction The absolute uncertainty of a number calculated by addition or
subtraction is obtained by using the absolute uncertainties of numbers used in the calculations as follows:
Example:
22value
2valueAnswer .Uncert.Abs.Uncert.Abs.Uncert.Abs
1
Value Abs. Uncert. 1.76 (± 0.03)+ 1.89 (± 0.02)- 0.59 (± 0.02) 3.06
04.002.002.003.0.Uncert.Abs 222Answer
Answer:
Errors
5.) Propagation of Uncertainty(iii) Once the absolute uncertainty of the answer has been determined, its relative uncertainty can also be calculated, as described previously.
Example (using the previous example):
Note: To avoid round-off error, keep one digit beyond the last significant figure in all calculations.
- drop only when the final answer is obtained
Experimental Error & Data Handling
%1%3.1)100(06.3
04.0.(%)Uncert.lRe
Round-off errors
1 sig. fig.
Experimental Error & Data Handling Errors
5.) Propagation of Uncertainty(i) Multiplication and Division
The relative uncertainties are used for all numbers in the calculation
Example:
22value
2valueAnswer .Uncert.lRe.Uncert.lRe.Uncert.lRe
1
64.5
02.059.0
02.089.103.076.1
)100(
59.0
02.0,)100(
89.1
02.0),100(
76.1
03.0.Uncert.lRe
%4.3,%1.1%,7.1.Uncert.lRe
%4%0.44.31.17.1.Uncert.lRe 222Answer
3 sig. fig.
1 sig. fig.
Experimental Error & Data Handling Errors
5.) Propagation of Uncertainty(ii) Once the relative uncertainty of the answer has been obtained, the absolute uncertainty can also be calculated:
(iii) Example (using the previous example):
)100(ValueCalculated
yUncertaintAbsolutey(%)UncertaintRelative
Rearrange:
value)d(calculatey(%)UncertaintRelative
yUncertaintAbsolute)100(
2.023.0100
%0.4)64.5(
yUncertaintAbsolute 1 sig. fig.
Experimental Error & Data Handling Errors
5.) Propagation of Uncertainty(iv) For calculations involving Both additions/subtractions and
multiplication/divisions: Treat calculation as a series of individual steps Calculate the answer and its uncertainty for each step Use the answers and its uncertainty for the next calculation, etc. Continue until the final result is obtained
(v) Example:
First operation: differences in brackets
?619.0
02.089.1
02.059.003.076.1
226 02.003.003.0
036.017.102.059.003.076.1
3 sig. fig.
3 sig. fig.
1 sig. fig., but carry two sig. fig. through calculation
Experimental Error & Data Handling
Errors
5.) Propagation of Uncertainty (v) Example:
Second operation: Division
212
13
1
16
%.1%.3%3%.3
%3%61.0%.189.1
%.317.1
02.089.1
03.017.1
Convert to relative
uncertainty
3 sig. fig.
1 sig. fig.
Experimental Error & Data Handling
Errors
5.) Propagation of Uncertainty (vi) Uncertainty of a result should be consistent with the number of significant
figures used to express the result.
(vii) Example:
1.019 (±0.002)
28.42 (±0.05)
But:12.532 (±0.064) too many significant figures
12.53 (±0.06) reduce to 1 sig. fig. in uncertainty
same reduction in results
Result & uncertainty match in decimal place
The first digit in the answer with any uncertainty associated with it should be the last significant figure in the number.
Experimental Error & Data Handling
Errors
5.) Common Mistake (vi) Number of Significant Figures is Not the number shown on your calculator.
Not 10 sig. fig.
596966414.223.9
97.23