TLI 2012: Data management for chickpea and groundnut research
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Transcript of TLI 2012: Data management for chickpea and groundnut research
Chickpea & Groundnut Research Data Management
in Tropical Legumes1Annual Meeting – Tropical Legumes 1
07 May - 11 May, 2012
P.V.N.S. Prasad
ICRISAT
Outline
• Introduction
• Present Status Trait Dictionaries Evaluation data Genotyping data Mapping data QTL data
• Next Steps
Introduction
• Crop Lead Center
• Trait Dictionaries and establish crop ontologies
• Catalogue of TLI Data sets
• Data for all TLI datasets
• Storing data into databases
Workshops and Training
• TL Data Managers training Workshop (9-19 August 2011) held at GCP Headquarters at CIMMYT in Mexico.
• Crop Ontology Community of Practice Workshop, 19-22 March 2012 held at Bioversity International, Maccarese, Italy
• Data Management Session at Integrated Breeding Platform Project Annual Meeting to be held on 4th to 9th June 2012 at Beijing, China.
Trait Dictionaries
• Trait Dictionaries for Fieldbook Development
• Ranking of traits
• Crop Ontologies established
Catalogue of TLI Data
• Catalogue of TL1 datasets - Compiled with the help of the reports submitted.
• Included Embargo, Responsible Person and Time Required
Accessibility
• Evaluation - ICIS Workbook, Retriever & Zeus
• Germplasm - ICIS Setgen, GMS search
• Mapping data - GDMS, CMap
• Genotyping data - GDMS, CMap
• QTL data - GDMS , CMap
• Marker data - GDMS
Next Steps • New Traits
• Data Curation
• IB Field book
• TLI Phase II
• Documentation http://wiki.cimmyt.org/confluence/display/MBP/Tropical Legume (Chickpeas)
http://wiki.cimmyt.org/confluence/display/MBP/Tropical Legume (Groundnuts)
Acknowledgements
• TL1 Chickpea and Groundnut Group
• Generation Challenge Program
• Integrated Breeding Platform
• Bioinformatics@ICRISAT
Thank you..