The Importance and Future Trends of Sharing Biodiversity Data
description
Transcript of The Importance and Future Trends of Sharing Biodiversity Data
![Page 1: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/1.jpg)
The Importance and Future Trends of Sharing Biodiversity Data
Chau Chin LinTaiwan Forestry Research Institute
![Page 2: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/2.jpg)
http://taibif.tw
Chris King 2011 Genotype 1.1.9
Biodiersity: Tree of Life on the Planet
![Page 3: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/3.jpg)
http://taibif.tw
Vernacular (FR): Pyrale du maïs
Vernacular (ES): Piral del maíz
Vernacular (DE): Maiszünsler
Diagnosis: Wingspan 26-30mm; sexually dimorphic;male: forewings ochreous to dark brown; female: forewings pale yellow; …
Foodplant: Zea mais L. 1753
Species: Ostrinia nubilalis (Hübner, 1796)
Family: Pyralidae
Order: Lepidoptera
Class: Insecta
Genus: Ostrinia Hübner, 1825
Vernacular (EN): European Corn-borer
Family: Gramineae
Taxonomic Names
Collection: DGH LepidopteraRecord id: DGHEUR_003217Country: FranceCoordinates: 03.047˚E 48.730˚NDate: 28 June 2003Collector: Donald HobernIndividuals: 3Richness:
Spatial /Temporal Observations
Biotic Interactions
Locus: AAL35331Definition: acyl-CoA Z/E11 desaturase
1 mvpyattadg hpekdecfed...
Sequence Data
Average RainfallLocation: 48.82°N 2.29°E Jan Feb Mar Apr ...182.3 120.6 158.1 204.9 ...
Abiotic
Taxonomic Descriptions
Pheromones of Ostriniahttp://www.nysaes.cornell.edu/fst/faculty/acree/pheronet/phlist/ostrinia.html
Digital Literature and Web Resources
Synonym: Pyralis nubilalis Hübner, 1796
Biodiversity: Information of Life
![Page 4: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/4.jpg)
http://taibif.tw
Challenges and OpportunitiesScientific innovation has been called on to spur economic recovery and to inform sustainability.Data collection,curation, and access are central to all of these issues
Science 311:692-694, 2011
![Page 5: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/5.jpg)
http://taibif.tw
Annual
Cumulative
Worm et al., Science 2006
Data Informs the Lost of Biodiviersity
![Page 6: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/6.jpg)
http://taibif.tw
Data Provides Actions Making
![Page 7: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/7.jpg)
http://taibif.tw
Data Enhances Understanding of The Real World
Understanding this disease requires knowledge of epidemiology, genetics, and transmission modes, along with their ecological contexts.
Integrating ecologically pertinent data into the chain of information from the gene to the biosphere will significantly enhance our understanding of the natural world.
Whitfield J. 2003 Ape populations decimated by hunting and Ebola virus. Nature 422:551
![Page 8: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/8.jpg)
http://taibif.tw
All about Data
![Page 9: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/9.jpg)
http://taibif.tw
Observations/experimentsObservations/experiments
the real worldthe real world
Data/Raw data/DatasetData/Raw data/Dataset
informationinformation
Data Comes from Research of the Real World
![Page 10: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/10.jpg)
http://taibif.twPlanning
Problem
Analysisand
modeling
The Traditional Paradigm of Data
Data Collection
Publications
Raw Data
![Page 11: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/11.jpg)
http://taibif.tw
(Michener et al. 1997)
Data EntropyIn
form
atio
n C
on
ten
t
Time
Time of publication
Specific details
General details
Accident
Retirement or career change
Death
![Page 12: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/12.jpg)
http://taibif.tw
Planning Problem Definition(Research Objectives)
Analysisand
modeling
Collection
OriginalObservations
Publications
Planning
Selection andextraction
SecondaryObservations
used data
New Paradigm of Data
![Page 13: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/13.jpg)
http://taibif.tw
Data CyberinstrstructureData Cyberinstrstructure
The Real WorldThe Real World
Synthesis Hubsand Nodes
Fundamental Research
ObservatoryNetworks
Collaboratories
A Data-intensive ApproachA Data-intensive Approach
InformationResources
![Page 14: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/14.jpg)
http://taibif.tw
Breaking Spatial and Temporal Barriers
![Page 15: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/15.jpg)
http://taibif.tw
Integrating Heterogeneous Data
![Page 16: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/16.jpg)
http://taibif.tw
Data collecting
Data Preserving and managing
Adapting Cutting Edge Technologies
Data transferring
Data discovering,Integrating,analyzing,visualizing
![Page 17: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/17.jpg)
http://taibif.tw
Providing Good Quality Data Available Online
![Page 18: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/18.jpg)
http://taibif.tw
Dealing with Data Flow Change
![Page 19: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/19.jpg)
http://taibif.tw
Interpret a pattern1,000 x daily
Interpret a number10 x daily
Dealing with Data Collecting Change
![Page 20: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/20.jpg)
http://taibif.tw
Dealing with Data Deluge
![Page 21: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/21.jpg)
http://taibif.tw
Raw data
InformationKnowledge
Management,Archiving,
&Curation
Discovery,Retrieval
Integrating,Analysis
&Visualization
Towards Automation of Data Processing
![Page 22: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/22.jpg)
http://taibif.tw
Metadata?
Metadata Is the Key to New Paradigm
![Page 23: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/23.jpg)
http://taibif.tw
Metadata
Date(YYYYMMDD)
Temp(°C)
Precip.(mm)
Obs. #1
Obs. #2
Obs. #3
20040928 29.4 18.4
20040929 29.7 4.2
20040930 28.9 21.3
Data
What Is Metadata-An Example
![Page 24: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/24.jpg)
http://taibif.tw
Metadata Is Data about Data
… and All Other Facet of Dataset!
Who?
What?
Wh
en?
Where?
How?
![Page 25: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/25.jpg)
http://taibif.tw
Standards for Metadata• ISO 19115 is a geo-spatial metadata standard developed by ISO/TC 211. ISO 19115 defines a comprehensive metadata model for geographic objects. ISO/TC 211also defined a smaller set of core metadata elements (shown on example slide.) This core contains the minimum elements that satisfy the requirements of an ISO conformant metadata record. The ISO 19115 standard does not specify storage format, but XML schemas are under development for an XML encoding of it (in full or for specialized profiles).
• CSDGM/FGDC (Content Standard for Digital Geospatial Metadata) is a standard for metadata for geographic objects developed by FGDC (Federal Geographic Data Committee). However, this standard is not limited to spatial data. FGDC enables development of profiles, i.e. customization of the standard to suit the needs of a particular application domain (while staying within the framework of the standard).
SPOT imagery FGDC examplehttp://gcmd.nasa.gov/servlets/md/getdif.py?entry_id=[GCMD]CANEMRCCRSSPOT&xsl=dif_to_fgdc-html.xsl¤tTab=¤tItem=&portal=gcmd
• EML (Ecological Metadata Language) http://knb.ecoinformatics.org/data.html
•Darwin CoreThe Darwin Core (sometimes abbreviated as DwC) is a standard designed to facilitate the exchange of information about the geographic occurrence of species and the existence of specimens in collections.
Many Standards Can be Chosen
![Page 26: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/26.jpg)
http://taibif.tw
Ecological Metadata Language is…• an ecological metadata standard• very extensible; it can be used to describe
many different types of data• comprehensive and supports a rich set of
constructs to fully describe data• XML and is defined by an XML Schema• exploitable by different computer
applications
What Is EML?
![Page 27: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/27.jpg)
http://taibif.tw
1990 1995 2000 2005
Early ecological metadata work in LTER and elsewhere
FL
ED
rep
ort
Mich
en
er e
t al. p
ap
er
EM
L 1
.0.0
XM
L 1
.0 re
lea
sed
EM
L 1
.4.x
EM
L 2
.0.0
be
ta1
-9E
ML
2.0
.0rc1
-3E
ML
2.0
.0
EM
L 2
.0.1
BD
P a
pp
rove
d
Se
con
d E
ML
wo
rksho
pE
ML
AS
U m
ee
ting
KN
B T
oo
ls Wo
rksho
p
EM
L 1
.3.0
FG
DC
CS
DG
M
NB
II crea
ted
‘91 ‘92 ‘93 ‘94 ‘96 ‘97 ‘98 ‘99 ‘01 ‘02 ‘03 ‘04
ISO
19
11
5G
ML
3.0
FG
DC
CS
DG
M 2
.0
FG
DC
CS
DG
M R
S
FG
DC
crea
ted
NC
EA
S fo
rme
d
First E
ML
wo
rksho
p
EML History
![Page 28: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/28.jpg)
http://taibif.tw
EML Modules
![Page 29: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/29.jpg)
http://taibif.tw
Darwin Core Ratified in the Year of Darwin!!
![Page 30: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/30.jpg)
http://taibif.tw
taxonRank
higherClassification
taxonConceptIDassociatedSequences
geodeticDatumspecificEpithet
coordinatePosition
associatedSequences: A list (concatenated and separated) of identifiers (publication, global unique identifier, URI) of genetic sequence information associated with the Occurrence.
Darwin Core – a glossary of terms
![Page 31: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/31.jpg)
http://taibif.tw
Data Archiving Provides Opportunities for Auto Analysis
![Page 32: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/32.jpg)
http://taibif.tw
Species Distribution Prediction
(Abies Kawakamii)
![Page 33: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/33.jpg)
http://taibif.tw
Metadata list
Key words query
Metadata provides data source
Retrieval of dataset
Data analysis
An Example of Biodiversity and Ecological Data
![Page 34: The Importance and Future Trends of Sharing Biodiversity Data](https://reader035.fdocuments.in/reader035/viewer/2022062519/56815455550346895dc26eea/html5/thumbnails/34.jpg)
Thank You!
http://taibif.tw