The Ecological Data Application System (EDAS) for upload of biological data to STORET Benjamin...
Transcript of The Ecological Data Application System (EDAS) for upload of biological data to STORET Benjamin...
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TheThe Ecological Data Application SystemEcological Data Application System (EDAS)(EDAS)
forfor uploadupload ofof biological databiological data toto
STORETSTORET
Benjamin Jessup. Tetra Tech, Inc.Benjamin Jessup. Tetra Tech, Inc.
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Why use EDAS?Why use EDAS?
“ “ Do your Do your Bug-thinking Bug-thinking in EDAS ” in EDAS ”
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Ecological Data TypesEcological Data Types
• Metadata for Programs, Metadata for Programs, Projects, Station, Projects, Station, Samples, Replicates, Samples, Replicates, Personnel, and Personnel, and MethodsMethods
• Taxonomic census Taxonomic census data for Benthic data for Benthic Macroinvertebrates, Macroinvertebrates, Fish, and PeriphytonFish, and Periphyton
• Water QualityWater Quality
• Habitat Habitat AssessmentsAssessments
• Physical Physical CharacteristicsCharacteristics– Pebble CountsPebble Counts– Cross-sectionsCross-sections
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Data EntryData Entry
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Taxa Characteristics ReviewTaxa Characteristics Review
Navigate and Navigate and Update the ListUpdate the List
Taxonomic Taxonomic HierarchyHierarchy
Referential DataReferential Data
GraphicsGraphics
Taxon Taxon CharacteristicsCharacteristics
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Metric CalculationsMetric Calculations
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126 Stations, 312 Samples, 336 taxa collected from 1997-2000126 Stations, 312 Samples, 336 taxa collected from 1997-2000
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Alaska Data UploadsAlaska Data Uploads
• ENRI of UAA working with ADECENRI of UAA working with ADEC
• Biocriteria Development projectBiocriteria Development project
• Cook Inlet as pilot regionCook Inlet as pilot region
• 5474 biological results5474 biological results
• 966 water quality results966 water quality results
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EDAS and STORETEDAS and STORET
• EDAS incorporates STORET conventions EDAS incorporates STORET conventions and codes for sample types, methods, etc.and codes for sample types, methods, etc.
• Batch files are prepared in EDAS, exported Batch files are prepared in EDAS, exported to a text file, and imported in STORETto a text file, and imported in STORET
• EDAS currently supports data transfer for EDAS currently supports data transfer for
benthic macroinvertebrate and water benthic macroinvertebrate and water
quality dataquality data
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Preparation for Batch UploadPreparation for Batch Upload
• EDASEDAS– Required fields completed with meaningful dataRequired fields completed with meaningful data– Sample and Biological units uniquely identifiedSample and Biological units uniquely identified
• Sample IDs, Replicate IDs, Method IDs, PersonnelSample IDs, Replicate IDs, Method IDs, Personnel• Characteristic Groups and Row IDsCharacteristic Groups and Row IDs
• STORETSTORET– Metadata entered for:Metadata entered for:
• organization, stations, taxa, personnel, methods, etc.organization, stations, taxa, personnel, methods, etc.
– Determine complete replacement or partial uploadDetermine complete replacement or partial upload
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Batch File GenerationBatch File Generation
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Error ReductionError Reduction
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Save batch file to text fileSave batch file to text file
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STORET Batch Upload STORET Batch Upload
Dialogue from STORET screensDialogue from STORET screens
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Future DevelopmentsFuture Developments
• Support for upload of other data typesSupport for upload of other data types
• Coordination with SIMCoordination with SIM
• EDAS Analysis Pack for STORETEDAS Analysis Pack for STORET
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ftp://anon:[email protected]/anon/EDAS/ftp://anon:[email protected]/anon/EDAS/
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The EndThe End
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Relational DatabaseRelational Database
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Flexible Query DesignFlexible Query DesignThis slide will probably not be included
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Applications of EDASApplications of EDAS
• Biomonitoring data analysisBiomonitoring data analysis– 305(b) reporting305(b) reporting– 303(d) listing for aquatic life use303(d) listing for aquatic life use– Biocriteria developmentBiocriteria development– Discharge permitting Discharge permitting – Aquatic resource management plansAquatic resource management plans
• Communication of resultsCommunication of results– Summary reportsSummary reports– Data exportData export
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EDAS UsersEDAS Users
– AlaskaAlaska
– ArizonaArizona
– CaliforniaCalifornia
– ColoradoColorado
– GeorgiaGeorgia
– IllinoisIllinois
– Iowa Iowa
– KentuckyKentucky
– MarylandMaryland
– MassachusettsMassachusetts
– MississippiMississippi– TennesseeTennessee– Rhode IslandRhode Island– South DakotaSouth Dakota– TexasTexas– VirginiaVirginia– West VirginiaWest Virginia– WyomingWyoming– USGSUSGS
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Station Information
Sample Information
SampleTaxonomy
Metrics
Metric Scores
Data SummariesData SummariesThis slide will probably not be included
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