Supplementary figure 1A

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Supplementary Figure 1: Comparison of the results obtained from three widely used databases (namely AmiGO, ArrayExpress and GeneCards) with that from HypoxiaDB. A specific protein PGK1 is searched in HypoxiaDB and in the other databases. The results were compared. Panel 1A and 1B shows the results obtained from Amigo. •Panel1A shows screenshotsof the page obtained on searching the term “hypoxia “ in AmiGO database. It shows 17 gene/proteins for hypoxia. PGK1 is not in this list. •Panel1B shows the screenshot of the page for PGK1 in Amigo database. The “Term Associations” tab does not show any association between PGK1 and hypoxia. Panel 1C shows the results from ArrayExpress. The highlighted text shows that the database reports PGK1 expression pattern changes from only 2 experiments. Panel 1D shows the results from GeneCards. The GeneCards shows the expression profile of PGK1 in different tissue types. However it does not provide a time dependent profile in different levels of hypoxia. Panel 1E,1F and 1G shows the results from HypoxiaDB •Panel 1E shows the general details of PGK1 from HypoxiaDB. The purple circle represent other external databases cross-linked to HypoxiaDB. •Panel 1F shows a screenshot of “Correlations with Hypoxia” subsection on the protein page of PGK1. This lists the tissue-specific expression pattern changes of PGK1 in different durations and levels of hypoxia. Also it lists the type of study (genomic/transcriptomic/proteomic) and hence the type of molecule (DNA/mRNA/protein) whose expression was studied. •Panel 1G shows the other biological details of PGK1 which may be of interest to the researcher. This includes Gene ontology, KEGG pathway, Homology

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Supplementary Figure 1: Comparison of the results obtained from three widely used databases (namely AmiGO, ArrayExpress and GeneCards ) with that from HypoxiaDB . A specific protein PGK1 is searched in HypoxiaDB and in the other databases. The results were compared. - PowerPoint PPT Presentation

Transcript of Supplementary figure 1A

Page 1: Supplementary figure 1A

Supplementary Figure 1: Comparison of the results obtained from three widely used databases (namely AmiGO, ArrayExpress and GeneCards) with that from HypoxiaDB.A specific protein PGK1 is searched in HypoxiaDB and in the other databases. The results were compared.

Panel 1A and 1B shows the results obtained from Amigo. •Panel1A shows screenshotsof the page obtained on searching the term “hypoxia “ in AmiGO database. It shows 17 gene/proteins for hypoxia. PGK1 is not in this list.•Panel1B shows the screenshot of the page for PGK1 in Amigo database. The “Term Associations” tab does not show any association between PGK1 and hypoxia.

Panel 1C shows the results from ArrayExpress. The highlighted text shows that the database reports PGK1 expression pattern changes from only 2 experiments.

Panel 1D shows the results from GeneCards. The GeneCards shows the expression profile of PGK1 in different tissue types. However it does not provide a time dependent profile in different levels of hypoxia.

Panel 1E,1F and 1G shows the results from HypoxiaDB•Panel 1E shows the general details of PGK1 from HypoxiaDB. The purple circle represent other external databases cross-linked to HypoxiaDB.•Panel 1F shows a screenshot of “Correlations with Hypoxia” subsection on the protein page of PGK1. This lists the tissue-specific expression pattern changes of PGK1 in different durations and levels of hypoxia. Also it lists the type of study (genomic/transcriptomic/proteomic) and hence the type of molecule (DNA/mRNA/protein) whose expression was studied.•Panel 1G shows the other biological details of PGK1 which may be of interest to the researcher. This includes Gene ontology, KEGG pathway, Homology information, OMIM information, protein family information, protein-protein interactions details, PDB information and Fasta sequence. The protein-protein interaction page, highlights the interacting partners within HypoxiaDB in red color. The purple circles represent other external databases cross-linked to HypoxiaDB.

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NCBI Gene

Database

HGNCDatabase

UniprotDatabase

EnsemblDatabase

VegaDatabase

UnigeneDatabase

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Note: Due to paucity of space, the figure shows only top 6 out of the total 15 associations of PGK1.

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KEGG Pathway Database

Gene Ontology Database

Homologene Database

NCBI Gene

DatabaseNCBI

Protein Database

NCBI OMIM

Database

PDBProteins in HypoxiaDBPFAM

IPI

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HPRD


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Supplementary Figures: Supplementary Figure 1 – PANCAN ...df6sxcketz7bb.cloudfront.net/manuscripts/88000/88755/jci.insight.88755.sd.pdfSupplementary Figures: Supplementary Figure

Supplementary Figures: Supplementary Figure 1 – PANCAN ...df6sxcketz7bb.cloudfront.net/manuscripts/88000/88755/jci.insight.88755.sd.pdfSupplementary Figures: Supplementary Figure

Supplementary information for: Discovery and … · Supplementary Figure S2 Supplementary Figure S3 Supplementary Figure S4 Supplementary Figure S5 Supplementary Figure S6 Supplementary

Supplementary information for: Discovery and … · Supplementary Figure S2 Supplementary Figure S3 Supplementary Figure S4 Supplementary Figure S5 Supplementary Figure S6 Supplementary

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images.nature.com · Web viewSupplementary Figure 7 Supplementary Figure 3 Supplementary Figure 1 Supplementary Materials Supplementary Figures S1-S7 Supplementary Tables S1-S7 Clinical

images.nature.com · Web viewSupplementary Figure 7 Supplementary Figure 3 Supplementary Figure 1 Supplementary Materials Supplementary Figures S1-S7 Supplementary Tables S1-S7 Clinical

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SUPPLEMENTARY MATERIAL: SUPPLEMENTARY FIGURE 2cambridge.org:id:article:S... · SUPPLEMENTARY MATERIAL: SUPPLEMENTARY FIGURE 2 Image gallery to accompany John Robb (2015), “Prehistoric

SUPPLEMENTARY MATERIAL: SUPPLEMENTARY FIGURE 2cambridge.org:id:article:S... · SUPPLEMENTARY MATERIAL: SUPPLEMENTARY FIGURE 2 Image gallery to accompany John Robb (2015), “Prehistoric

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Supplementary Figure 1. Supplementary Figure 2 Supplementary Figure 3 A B.

Supplementary Figure 1. Supplementary Figure 2 Supplementary Figure 3 A B.

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LEGENDS TO SUPPLEMENTARY FIGURES Supplementary Figure 1 ...

LEGENDS TO SUPPLEMENTARY FIGURES Supplementary Figure 1 ...

Supplementary Figure 1A. R 2 = 0.9694 p < 0.0001 qRT-PCR Illumina BeadChip Supplementary Figure 1B 3 2 1 0 -2 -3 -2 -1 0 1 2 3 4.

Supplementary Figure 1A. R 2 = 0.9694 p < 0.0001 qRT-PCR Illumina BeadChip Supplementary Figure 1B 3 2 1 0 -2 -3 -2 -1 0 1 2 3 4.

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Supplementary Figure 5.

Supplementary Figure 1 - Welcome to the UCLA …€¦ ·  · 2016-06-151 Supplementary Figure 1 Supplementary Figure 1. ... Supplementary Figure 5 Supplementary Figure 5. ... JP10089

Supplementary Figure 1 - Welcome to the UCLA …€¦ ·  · 2016-06-151 Supplementary Figure 1 Supplementary Figure 1. ... Supplementary Figure 5 Supplementary Figure 5. ... JP10089

media.nature.com · 1 Supplementary Materials Supplementary Table S1 Supplementary Table S2 Supplementary Table S3 Supplementary Figure S1 Supplementary Figure S2 Supplementary Figure

media.nature.com · 1 Supplementary Materials Supplementary Table S1 Supplementary Table S2 Supplementary Table S3 Supplementary Figure S1 Supplementary Figure S2 Supplementary Figure