Supplement to Figure 1 – full version of the Arachis genetic map

4 slides including this one

Arachis linkage groups with affinities to Lotus and Medicago chromosomes represented as colored blocks, and synteny blocks (SBs) indicated.

The map is based on a cross between two diploid wild species with AA genome, A. duranensis and A. stenosperma the former being the most probable AA genome donor to cultivated peanut. Homologies to Lotus and Medicago chromosomes are indicated by color blocks at the left of each linkage group. Colors were assigned to the model species chromosomes so that corresponding chromosomes are represented by corresponding or neighboring colors in the spectrum. In this way, it is possible to see that Arachis homologies with the model legumes are mostly to corresponding groups of Medicago and Lotus. Linkage groups are presented in the order used in the plots, and so the main affinities of the Arachis linkage groups with the model legumes roughly follows through the rainbow spectrum, with the first, Ar9, having predominantly red affinities (Lj5, Mt1) and the last, Ar5, having predominantly violet affinities (Lj2, Mt5). Synteny blocks are numbered according to Cannon et al 2006, with the addition of SB11 identified in this study.

Linkage groups were numbered according to Moretzsohn et al. (2005). Numbers on the left of each group are Kosambi map distances. Markers that showed significant distortions from the 1:2:1 segregation ratio are indicated by #. Dominant markers are identified by Ad or As after the marker name if they amplified alleles from A. duranensis or A. stenosperma, respectively. Markers that amplified two loci have underscore 1 or 2 after the marker name. Anchor markers are shown in bold and red, Universal legume anchor marker names all start with “Leg”.

Mt1 Mt2 Mt3 Mt7 Mt4 Mt8 Mt5 Mt6

Lj5 Lj6 Lj1 Lj3 Lj4 Lj2

Lec-1#0.0

gi-11709.8

Ah-64921.2Leg32222.2PM170#24.5ML4D0225.9Seq14G333.5

Leg1Gm54.8Leg19956.4P21M36-260.5

AC2C02_173.6Ah-636_1As75.8

AS11B89.8P25M46-9##93.3PM35##104.1AD11G#109.1TC1D02##110.8RM13A12#115.7AD24G#117.1AD11D#117.5P18M69-1##118.1PM119#119.0Leg100#120.6Leg467121.2TC1B02_3Ad121.5Ah-671##122.7gi-7295_1##138.5P16M48-1##154.6P13M49-1##161.5

AS21C174.8

Ar9Mt Lj

SB2

gi-7160.0Leg0334.1TC9F045.6Ah-558 TC4H2_2As6.3RM15C118.2TC1E0511.8P25M46-718.5AD21E23.8AD25A28.3P21M36-729.3P16M48-329.4Leg00242.3P16M48-746.0gi-7295Ad51.8RN1A0958.9PM18860.5TC6H0361.0TC9F1061.6RN2H1167.7P21M68-474.9Leg17MGm91.2P18M45-26102.4

RM5G08110.8

Ad14C/14B123.5

P25M46-8148.0Ad9A-As9B160.9AS1A163.3AD24C167.1RN22A12171.2Leg070172.2Leg305173.6Leg30MGm176.5Leg654177.0TC7A02178.8RM11H6185.4TC3B05#195.0

Leg929209.5Leg924##212.4

P18M45-5/6230.4P18M45-7231.4

P22M34-15253.2

Ar8Mt Lj

SB11

SB4

Leg1520.0

AS24K#27.9

AS20A#39.4S1_A_36_B##41.6S1_A_36_D##45.0

Ad26B##53.5

As14D#60.7

Leg044##70.4AS27E#73.8P25M46-2As#76.2M14#82.9

P26M68-3/4###96.8

AS26A116.8

TC7G10##130.3Leg930#135.4Leg14MGm139.2Ah-229144.1Leg156148.2Leg136##153.4RN10F4##155.3TC5A07##155.9gi-832##160.5PM49##161.2RN5H02##163.1Ah-745_2##169.6TC9E08##179.5

Seq11C8198.4

Leg050##211.3Ah-462As#212.1PM120##213.1Leg270##214.6Ah-569##222.6Ah-408230.5

Leg062##249.0TC5C05Ad#249.6TC1H04##253.2RN12E01##260.0

P13M49-5##281.1P19M42-1###287.2

Ar4Mt Lj

SB3

TC2C120.0

RN0x68123.7gi-936#27.3gi-62328.2

RM15H08##40.1

TC4D09##58.4

AS13C67.6

Ar10Mt Lj

SB7

SB6

AD15B0.0AD17E3.5Leg0314.0

AD13D17.5

RN0x06Ad36.6TC1A0837.4

TC11A0455.2TC1A0255.9Leg09256.0RN0x61457.0Seq15D6_2As#57.1PM2458.4TC7C06Ad63.8gi-90667.1Leg045##72.4H180.0Leg346##82.5RN21H01#88.6Seq4H693.6P18M60-3#99.6Leg186#102.7Leg11MGm107.1TC3H07108.6AC2H11#109.9TC5A06As#110.0Leg081113.2LegExportin123.0Leg203130.2Leg074#136.7Leg356149.7Leg12MGm163.5

Ar6

Mt Lj

SB5

Leg188##0.0S1_A_37_A##14.0P21M68-315.8S1_A_36_C20.8TC7E04###25.5RN3E10##29.1Leg066###29.6LegTC987##32.2P21M68-6##40.8TC4G02###41.0RM1A05###45.5Leg237###47.3gi-560###51.2LegRAB###60.8Ah30###65.5Ag99###75.2PM3###76.8TC0A01Ad##77.1TC4E10###77.5PM42##78.1Leg4Gm#80.4Leg181###80.7Leg223##81.0Leg168##81.5Seq13B7##86.1As15C##88.3Leg043##94.8PM238##107.1TC2C07##108.1Leg225##108.7TC1B02_2##113.0RN10F9##120.3TC1E06#121.6RN9C08##121.7Leg4amino126.5S48-2137.8Ad11F150.8PM18Ad173.9

Leg133193.1RI2D06197.1

TC2A02210.8

RN8C09218.1RN23F10222.9

Seq4F10233.9TC3E02237.6

Ar3Mt Lj

Leg2080.0RN2F123.0Leg1045.1

Leg128##22.4

Ad14A42.9Leg24255.2Leg33MGm61.4TC7H1165.8Leg160 Leg15973.5Ah-07475.3TC4A0278.3TC11A0279.3Ah23_2As81.1AC3C0282.3RN0x50684.6TC1G0486.5Ah-659Ad90.4Leg20MGm100.7

RN0_729126.5

Ah11151.9

Leg177173.9TC4C08As183.4RN0x615187.8AC2C2_2As188.1Seq2G5188.4PM181188.9Leg202191.6Ah-573192.0RI1F06193.1TC4F12Ad193.8TC4D02193.9PM8196.2Leg213199.8PM230202.2PM32203.0TC4H02_1#216.0AD17B#224.4H8AAd#229.6AD19C#237.2P22M34-11248.9P25M46-11250.1P18M69-3251.9Ad27B257.7P18M60-2263.5RM17H09274.5

Leg146291.7P21M36-4/8292.2

PM22304.8

Leg069 Hom175318.0RI2A06321.8LegTC3145324.6

P18M45-18334.8

P25M41-10343.8

Ar2Mt Lj

Mt1 Mt2 Mt3 Mt7 Mt4 Mt8 Mt5 Mt6

Lj5 Lj6 Lj1 Lj3 Lj4 Lj2

SB8

SB10

RN17F120.0

Ah38.1

TC3H02Ad19.7

Ap16633.3

P18M60-1##51.2

P21M36-958.1

P19M42-6##68.3

Seq2H1177.6TC9B12Ad#81.2

P18M45-15#88.5P22M34-5693.1

P18M45-17100.8P13M49-9103.6P18M44-6109.8

Leg304##120.1

Ah-594As139.1TC9B08As142.0Ah-700As145.2Ah-745152.6

RN9A05_1171.5Seq3E5183.5Seq4C1190.2Seq2D1195.1Seq15D6_1#197.9Leg178203.2Seq12B2204.2Ah21207.6Ah2208.2Ah-193209.8Ap14209.9RN11E05210.9Leg047212.2TC2E11Ad213.9Leg187218.1TC7H09_1#230.1TC1D01_1240.7TC2D06250.8TC4G05Ad251.0

Ah-199269.0

Ah-330290.5

gi-876298.5Leg298303.8

Leg034314.2

P25M41-1332.7

P20M37-1340.8

AD13B357.6

gi-919376.9

TC2E05383.4

Leg169##407.9

Ar1

Mt Lj

Leg176##0.0

TC6G0921.3

TC1D01_2As36.5Leg24MGm42.4RN22G07#49.1TC4G1052.1TC3G01_256.0TC9H08#57.7PM20460.3PM225As65.5PM243##66.4

Leg14977.8

Leg05588.9

Leg29997.2

Leg228110.0

Leg196123.2

RN13D04134.6

Ar7Mt Lj

gi-6200.0gi-3850.5

gi-909##17.3

RN13G08###32.9

Leg036##39.4

AS20F#46.1

P25M46-4###60.5Leg076###67.1Ah-275###75.8Ah-614###76.3Leg088###77.4P18M45-4###82.0Ah-742###85.0Ah4-26###90.5PM45###90.6Ah20###91.0TC6E01###91.1PM36###91.2RM6E08###91.6PM65###93.4TC2B01###94.4TC3A12###100.4P20M51-8###101.1P18M44-7###110.7RM9A03###120.7RM2H10#138.0

AC3D07##154.4

Ah6-125##165.2

Leg224##174.0Leg083#179.0

Leg175#185.2

As24A200.4

Ad9C210.6P25M41-5214.8

Ar5

Mt Lj

SB9

Mt1 Mt2 Mt3 Mt7 Mt4 Mt8 Mt5 Mt6

Lj5 Lj6 Lj1 Lj3 Lj4 Lj2