Setting Up a MATLAB TCPIP Server Session

The MATLAB server session creates a data set to be transferred out, opens a TCP/IP server socket and waits for the client to connect to it. When the connection is established, the data is written out to the socket.

Prepare the data we want to send over to the client MATLAB session. In this case our data is created by a call to the membrane function.

data = membrane(1);

Let us list details of the data set we want to transfer. We will use this information later to set up some parameters on the server socket and in the client.

s = whos('data')

s =

name: 'data'

size: [31 31]

bytes: 7688

class: 'double'

global: 0

sparse: 0

complex: 0

nesting: [1x1 struct]

persistent: 0

Get the dimensions of the data array we will be transferring.

s.size

ans =

31 31

Get the number of bytes of data we will be transferring.

s.bytes

ans =

7688

Start a TCP/IP server socket in MATLAB. By setting the IP address to '0.0.0.0' the server socket will accept connections on the specified port (arbitrarily chosen to be 55000 in our case) from any IP address. You can restrict the TCP/IP server socket to only accept incoming connections from a specific IP address by explicitly specifying the IP address. Note the new property NetworkRole.

tcpipServer = tcpip('0.0.0.0',55000,'NetworkRole','Server');

Set the OutputBufferSize property to a value large enough to hold the data. This is the first place where we use the output of the whos function, specifically the value of s.bytes.

set(tcpipServer,'OutputBufferSize',s.bytes);

Open the server socket and wait indefinitely for a connection. This line will cause MATLAB to wait until an incoming connection is established.

fopen(tcpipServer);

Since the MATLAB server code is running in a separate MATLAB session than the client, you may notice the Busy status next to the MATLAB Start Button in the server session until the following commands have been executed. You may stop the MATLAB server socket creation and break out of this busy state by using the Control-C key combination to close the server socket. Note that once you close the server socket clients will no longer be able to connect to it until it has been re-opened.

Once the connection is made by the client, write the data out and close the server.

fwrite(tcpipServer,data(:),'double');

fclose(tcpipServer);

Setting Up the MATLAB Client Session

The MATLAB server session is running on a computer with a known IP address or hostname. In our case, this is the address '127.0.0.1'. The second MATLAB session that acts as the client application creates a TCP/IP client, connects to the server and retrieves the data. Once retrieved, the data will be visualized in the client session.

Create a MATLAB client connection to our MATLAB server socket. Note the value of the NetworkRole property on the client. Also note that the port number of the client matches that selected for the server.

tcpipClient = tcpip('127.0.0.1',55000,'NetworkRole','Client')

TCPIP Object : TCPIP-127.0.0.1

Communication Settings

RemotePort: 55000

RemoteHost: 127.0.0.1

Terminator: 'LF'

NetworkRole: client

Communication State

Status: closed

RecordStatus: off

Read/Write State

TransferStatus: idle

BytesAvailable: 0

ValuesReceived: 0

ValuesSent: 0

Set the InputBufferSize property so we have sufficient room to hold the data that will be sent to us by the server. The number 7688 is the number of bytes in the data array. For more general purpose code, you can parametrize this code by using the value in s.bytes instead of the hard-coded value of 7688.

set(tcpipClient,'InputBufferSize',7688);

I will define a long value for the Timeout; the waiting time for any read or write operation to complete. Adjust this value to ensure that any data that is being transferred to the client will be read back within the selected timeout.

set(tcpipClient,'Timeout',30);

Open a TCPIP connection to the server.

fopen(tcpipClient);

Read the data that is being written out on the server. Note that the data types need to be matched up on the client and server. The number of double values to be read back from the server socket is 961. For more general purpose code, you may parametrize the second argument using prod(s.size), for example.

rawData = fread(tcpipClient,961,'double');

Close the connection to the server once we've retrieved the data.

fclose(tcpipClient);

Reshape the data array and plot it. You can parametrize this by specifying s.size as the input to reshape instead of the hard-coded array size (31x31).

reshapedData = reshape(rawData,31,31);

surf(reshapedData);

Closing Notes

Note that this functionality is meant to be used behind a firewall or on a private network, and should be used in accordance with the license agreement as it relates to your particular license option and activation type. For more information on using MATLAB TCP/IP server sockets refer to the documentation.

We could see a number of uses of this functionality; an example being using MATLAB on an instrument used to gather data. Using TCP/IP server sockets in MATLAB it is now possible to transfer the data out, without the need for files, to a remote computer for further analysis and visualization in MATLAB.

Network Analysis and Visualization

Apply basic graph theory algorithms to Protein-Protein Interactions (PPI) and other gene networks; view network relationships using interactive maps, hierarchy plots, and pathways

Functions

graphallshortestpathsFind all shortest paths in graph

graphconncompFind strongly or weakly connected components in graph

graphisdagTest for cycles in directed graph

graphisomorphismFind isomorphism between two graphs

graphisspantreeDetermine if tree is spanning tree

graphmaxflowCalculate maximum flow in directed graph

graphminspantreeFind minimal spanning tree in graph

graphpred2pathConvert predecessor indices to paths

graphshortestpathSolve shortest path problem in graph

graphtopoorderPerform topological sort of directed acyclic graph

graphtraverseTraverse graph by following adjacent nodes

Classes

biographCreate biograph object

biograph objectData structure containing generic interconnected data used to implement directed graph