Selective Inhibition of HDAC6 induces DNA damage and apoptosis and Sensitizes Colon ... ·...

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Selective Inhibition of HDAC6 induces DNA damage and apoptosis and Sensitizes Colon Cancer Cells to Anticancer Agents Dong-Hee Shin The Graduate School Yonsei University College of Pharmacy

Transcript of Selective Inhibition of HDAC6 induces DNA damage and apoptosis and Sensitizes Colon ... ·...

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Selective Inhibition of HDAC6 induces DNA damage

and apoptosis and Sensitizes Colon Cancer Cells to

Anticancer Agents

Dong-Hee Shin

The Graduate School

Yonsei University

College of Pharmacy

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Selective Inhibition of HDAC6 induces DNA damage

and apoptosis and Sensitizes Colon Cancer Cells to

Anticancer Agents

A Master’s Thesis

Submitted to the Department of Parmacy

And the Graduate School of Yonsei University

In partial fulfillment of the requirements for the degree of

Master of pharmacy

Dong-Hee Shin

January 2014

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This certifies that the master’s thesis of

Dong-Hee Shin is approved.

Thesis Supervisor: 권소희

Thesis Committee Member: 남궁완

Thesis Committee Member: 이진우

The Graduate School

Yonsei University

January 2014

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Contents

Contents ................................................................................................................................................ i

List of Abbreviation ...................................................................................................................... iii

List of Figure .................................................................................................................................... iv

Abstract ................................................................................................................................................ v

Introduction ........................................................................................................................................1

Materials and Methods .................................................................................................................5

1. Chemicals and antibodies ...........................................................................................5

2. Cell culture .........................................................................................................................5

3. Cell growth and viability .............................................................................................5

4. MTT assay .........................................................................................................................6

5. Soft agar assay ................................................................................................................6

6. Acid extraction of histones .......................................................................................7

7. Annexin V/PI assay and Flow cytometry ...........................................................7

8. Western Blot .....................................................................................................................7

9. Small interfering RNA (siRNA) transfection .....................................................8

10. Analysis of gene expression by qRT-PCR .......................................................8

11. Statistical analysis .........................................................................................................9

12. Real Time PCR Primer sequences ...................................................................... 10

Result .................................................................................................................................................. 11

1. A452 is an effective HDAC6 inhibitor .............................................................. 11

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2. A452 Inhibits cell growth and viability of transformed but not normal

cells ............................................................................................................................................... 11

3. A452 induces caspase-dependent apoptosis................................................ 12

4. A452 induces the accumulation of γH2AX and phos-Chk2 .................. 13

5. A452 modulates p53 by upregulating wild type p53 and

downregulating mutant p53 in CRC cells .................................................................... 14

6. A452 sensitizes human colon cancer cells to cell death induced by

SAHA, cisplatin, irinotecan, or capecitabine ............................................................. 15

7. Down-regulation of HDAC6 expression increases sensitivity to cell

death induced by SAHA, irinotecan or capacitabine ............................................. 16

8. Culture with A452 plus SAHA, cisplatin, irinotecan or capecitabine

enhances caspase-dependent apoptosis in CRC cells ......................................... 17

9. A452 enhances the accumulation of γH2AX and phos-Chk2 induced

by SAHA, irinotecan or capecitabine ............................................................................ 17

Discussion ........................................................................................................................................ 37

Reference ......................................................................................................................................... 41

Abstract in Korean ...................................................................................................................... 46

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List of Abbreviation

cDNA complementary DNA

CRC Colorectal Cancer

DSB Double Strand Break

ECL Enhanced Chemiluminescence

HDAC6 Histone Deacetylase 6

HDACI Histone Deacetylase Inhibitor

HRP Horseradish peroxidase

IB Immunoblotting

mRNA messenger RNA

PCR Polymerase Chain Reaction

PI Propidium Iodide

SDS-PAGE sodiumdodecylsulfate-polyacrylamide gel electrophoresis

siRNA small interfering RNA

SEM standard error of the mean

5-FU 5-fluorouracil

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List of Figure

Figure 1. A452 is a specific-HDAC6 inhibitor

Figure 2. Effects of A452 on cell growth and viability and acetylated

patterns of proteins in HCT116 and HT29 cells

Figure 3. Effects of A452 on cell viability and acetylated patterns of

tubulin in normal and other transformed cells

Figure 4. A452 induces apoptosis and accumulation of γH2AX in colon

cancer cells

Figure 5. A452 regulate p53 in colon cancer cells

Figure 6. A452 enhances cell death induced by SAHA, irinotecan, or

capecitabine in transformed HCT116 cells

Figure 7. A452 enhances cell death induced by SAHA, irinotecan, or

capecitabine in transformed HT29 cells

Figure 8. Down-regulation of HDAC6 expression in HT29 cells results in

increased sensitivity to cell death induced by SAHA, irinotecan, or

capecitabine

Figure 9. A452 enhances SAHA-, irinotecan-, or capecitabine-induced cell

death

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Selective Inhibition of HDAC6 induces DNA damage

and apoptosis and Sensitizes Colon Cancer Cells to

Anticancer Agents

Dong-Hee Shin

The Graduate School

Yonsei University

College of Pharmacy

Abstract

Histone deacetylase 6 (HDAC6), the best-characterized class IIb histone

deacetylase, is a cytoplasmic enzyme that regulates many important

biological processes. HDAC inhibitors (HDACI) are promising therapeutic

agents which are currently used in combination with chemotherapeutic

agents in clinical trials for cancer treatment. Here we show that a γ–

lactam based HDAC inhibitor A452 selectively inhibits HDAC6 catalytic

activity in vivo and in vitro. A452 causes cell death as well as growth

inhibition of transformed cells (HCT116, HT29, LNCaP, MCF, A549) an

effect not observed in normal cells (BJ). Interestingly, A452 exhibits

differential cytotoxicity for wild type and mutant p53 human colon cancer

cells. A452 shows different mechanisms of action of modulating p53: A452

increases wild type p53 by destabilizing Mdm2 while decrease mutant p53

by stabilizing Mdm2 in colon cancer cells. Moreover, A452 significantly

enhances cell death induced by the topoisomerase I inhibitor irinotecan,

DNA synthesis inhibitor capecitabine (a prodrug of 5-fluorouracil) and the

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pan-HDAC inhibitor SAHA in colon cancer cells. A452 in combination with

irinotecan, capecitabine or SAHA is more potent than either drug alone in

the apoptotic pathway, as evidenced by an increase in PARP cleavage.

Furthermore, A452 enhances DNA damage induced by irinotecan,

capecitabine or SAHA as indicated by increased accumulation of H2AX and

activation of the checkpoint kinase Chk2. However, A452 does not

increase cisplatin-induced cytotoxicity in HCT116 and HT29 cells.

Therefore, these findings indicate that A452 is a specific HDAC6 inhibitor

and point mechanism by which HDAC6-selective inhibition can enhance

the efficacy of certain anti-cancer agents in colon cancer cells.

Keywords: Histone deacetylase 6, HDAC6-selective inhibitor, anticancer

agent, apoptosis, colorectal cancer

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Selective Inhibition of HDAC6 induces DNA damage

and apoptosis and Sensitizes Colon Cancer Cells to

Anticancer Agents

Dong-Hee Shin

The Graduate School

Yonsei University

College of Pharmacy

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Introduction

Colorectal cancer (CRC) is the third most commonly diagnosed cancer in

males and the second in female, and the fourth most leading cause of

cancer-related deaths in the Western world 1. The number of new cases

of CRC worldwide is increasing and approximately one half of CRC

patients develop metastatic disease. 5-fluorouracil (5-FU)/ capecitabine,

irinotecan and cisplatin/oxaliplatin are common chemotherapeutic agents

used to treat colorectal cancer. For instance, 5-FU-based chemotherapy

in CRC patients has been demonstrated to improve disease-free and

overall survival by 35 and 22%, respectively 2. However, in advanced CRC,

5-FU monotherapy produces response rates of only 10-15% 3. Recently,

combination treatment with targeted molecular therapies and traditional

chemotherapy as has significantly improved response rate and overall

survival of patients with advanced CRC 4. Despite of these improvements,

more than half of colorectal cancers initially respond to chemotherapy

almost all develop resistance and overall survival of patients with

metastatic colorectal cancer is less than one year 5-8. More than half of

colorectal adenocarcinomas are still diagnosed only when the disease

involves regional or distant structures 9. Chemoresistance of these

therapies is reported and is a critical factor limiting the efficacy of

chemotherapy for CRC. This chemoresistance has been proposed to

involve in various mechanisms, such as decreased sensitivity to apoptosis,

overexpression of the transporter protein P-glycoprotein. One strategy to

overcome chemoresistance is the use of combination chemotherapy, which

is associated with potentially higher response rates and less toxic effect.

However, the combination of cytotoxic agents has increased toxicity and a

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debatable overall survival benefit. Thus, continued development of novel

combination agents to circumvent drug resistance is of great importance

and imperative.

Histone deacetylase 6 (HDAC6) is a cytoplasmic class IIb

deacetylase that has unique structural features and substrate specificity 10.

HDAC6 possesses two catalytic domains and a C-terminal zinc finger

domain (ZnF-UBP domain, also known as BUZ) that binds free ubiquitin as

well as mono- and polyubiquitinated proteins with high affinity 11-13.

HDAC6 selectively deacetylates substrates such as tubulin, Hsp90, and

cortactin 14-16. As a microtubule-mediated cytoplasmic enzyme, HDAC6

regulates multiple important biological functionss through deacetylase

dependent and –independent mechanisms modulating many cellular

pathway relevant to normal and tumor cell growth, migration and death as

well as immune synapse formation, viral infection, the degradation of

misfolded proteins, and stress granule (SG) formation through complexes

with partner proteins. Interestingly, mice lacking HDAC6 do not have

abnormal development or problems with major organ functions 17,

suggesting that HDAC6 inhibition would not cause major side effects in

contrast to inhibition of other HDACs, in particular class I HDACs. Thus,

HDAC6 is an attractive target for potential cancer treatment.

Inhibition of HDAC has emerged as a promising approach for the

treatment of cancers 18-20. HDAC inhibitors (HDACI) have the potential to

be used as monotherapy or in combination with other anticancer therapies.

Two pan-HDACI, SAHA (vorinostat) and romidepsin (depsipeptide or

FK228), have been approved by the US Food and Drug Administration for

the treatment of cutaneous T cell lymphoma 21-23. Many more clinical trials

assessing the effects of various HDACI on both hematologic and solid

tumors are currently being conducted. Preclinical data with numerous

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cancer cell lines have been shown synergistic and additive effects when

combining HDACI with various anticancer therapies 22. Furthermore, a

number of combination therapies with HDACI are being investigated in

clinical trials for the treatment of neoplastic diseases 24. Despite the

anticancer effects of particular HDACI against certain cancers, many

aspects of HDAC and HDACI are still not fully understood and unselective

pan-HDACIs display adverse side effects such as fatigue, nausea,

vormiting, diarrhea, thrombocytopenia, and neutropenia. To solve these

issues, HDACI currently in clinical development target several HDAC

isoforms 25. The discovery of isoform-specific HDACI is important to

elucidate the mechanism of action of specific HDAC enzymes and may

offer a therapeutic advantage by minimizing toxicity profiles.

Among the HDACs, HDAC6-selective inhibitor is promising in

treatment of cancer. Selective inhibition of HDAC6 can influence a number

of cellular pathways involved in tumorigenesis. HDAC6 inhibition promotes

α-tubulin acetylation and acetylated tubulin enhances microtubule stability

and reduces cell migration 16. Through the ubiquitin-binding domain,

HDAC6 in concert with p97/VCP, TRIM50, and p62 controls aggresome

formation and autophagosome maturation for ubiquitin-selective quality-

control (QC) autophagy 26,27. Hyperacetylation of HSP90 in response to

HDAC6 inhibition reduces the chaperone association with its client

proteins, resulting in polyubiquitination and proteasomal degradation of

many HSP90 substrates 14. Furthermore, HDAC6 inhibition can abrogate

HSP90 chaperone function when combined with the HSP90 inhibitor 17-

AAG in human leukemia cell 28, augment the cytotoxic effects of paclitaxel

29, and enhance the cytotoxicity of the proteasome inhibitor bortezomib 30-

32. Such results emphasize the need to evaluate the combination effect of

HDAC6-specific inhibitor and other anti-cancer agents on CRC.

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Here, we report development of a novel γ-lactam based HDAC6

inhibitor A452. We show that A452 significant growth induces cell death

and inhibition in a panel of cancer cells. Furthermore, this study focuses

on the combination therapy of HDAC6-selective inhibitor with other

chemotherapeutic agents in treatment of CRC. We found that HDAC6-

selective inhibitor A452 significantly and synergically enhanced the effect

of anti-cancer drugs in inducing cell death of transformed cells but not

normal cells.

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Materials and Methods

1. Chemicals and antibodies

Anti-acetylated tubulin antibody (T6793, IB 1:2000) was purchased from

Sigma. Antibodies directed against α-tubulin (sc-32293, IB 1:2000),

HDAC6 (sc-11420, IB 1:1000), Histone H3 (sc-10809, IB 1:1000), p21

(sc-759, IB 1:1000), p53 (sc-126, IB 1:1000), Mdm2 (sc-965, IB 1:500),

Bax (sc-20067, IB 1:500) and Puma (sc-28226, IB 1:500) were purchased

from Santa Cruz. Anti-acetylated H3 (06-599, IB 1:2000) antibody was

obtained from Millipore. Anti-phospho-Chk2 (2661, IB 1:500) antibody

was from Cell Signaling. Anti-gamma H2A.X (ab2893, IB 1:1000) antibody

was purchased from abcam. Anti-PARP (551024, IB 1:500) antibody was

purchased from BD Pharmingen™. Anti-Beta-Actin (G043, IB 1:1000)

antibody was purchased from abm.

2. Cell culture

Human cancer cell lines were purchased from American Type Culture

Collection (ATCC, Manassas, VA) and cultured in medium (HyClone,

Thermo Scientific Pierce, Rockford, IL, USA) containing 10% fetal bovine

serum (FBS), 100 units/ml penicillin, and 100 µg/ml streptomycin in a

humidified atmosphere of 5% CO2 and 95% air at 37°C.

3. Cell growth and viability

To monitor cell growth and viability, cells were seeded in triplicate at 6 ×

103 cells in 200 μl of medium in 96-well plates. The drugs were added at

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the indicated concentrations 24 h after seeding. After drug treatment, 20

μl of CCK-8 (CK04-05, DOJINDO MOLECULAR TECHNOLOGIES, INC.)

reagent were added to the culture and reaction mixtures were incubated at

37°C for 4 h. The absorbance readings for each well were carried out at

450 nm using the multimode microplate reader (Teckan, Maennedorf,

Switzerland).

4. MTT assay

Cell viability was assessed by 3-(4, 5-dimethylthiazol-2-yl)-2, 5-

diphenyltetrazo-lium bromide (MTT) assay. Briefly, 6x103 of cells were

seeded into 96-well plates for 24 h, followed by incubation with various

reagents for indicated time. After adding 20 µl/well of MTT solution, the

cells were incubated for another 2 h. Supernatants were then removed and

the formazan crystals were dissolved in 100 µl/well DMSO. The

absorbance at 570 with a 630 nm reference of each sample was measured

using multimode microplate reader (Teckan, Maennedorf, Switzerland).

The results were presented as percent absorbance relative to vehicle to

control cultures. Three independent triplicate experiments were

performed.

5. Soft agar assay

Soft agar assays were carried out in 6-well plate in which 2 ml of 1X

RPMI1640 with 10% FBS was overlaid with 1 ml of 0.5% base agar and

0.25% top agar in 1X RPMI1640 with 10% FBS containing the cells. Cells

of each clone (2 × 104) were plated. 1 ml of culture medium was added to

the top of each plate every 5 days and cells were grown at 37°C for 30

days. The plates were stained with 1 ml of 0.05% Crystal Violet for > 1

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hour and colonies were counted using a microscope.

6. Acid extraction of histones

HCT116 and HT29 (5.5 x 106) cells were washed with PBS and cell were

suspended in 10 volumes of PBS and centrifuged at 200 g for 10 min. Cells

were then suspended with five volumes of hypotonic lysis buffer (10 mM

Tris-Cl (pH 8.0), 1.5 mM MgCl2, 1 mM KCl, 1 mM DTT, and 1 mM

phenylmethylsulfonyl fluoride) and 0.4 N H2SO4 at a final concentration of

0.2 M and subsequently lysed on ice for 30 min. After centrifugation at

16,000 g for 10 min at 4°C, the cell supernatant fraction that contained

acid-soluble proteins was retained. Trichloroacetic acid was added to the

supernatant up to 33% and the samples were incubated on ice overnight.

Proteins were pelleted by centrifugation at 16,000 g for 10 min at 4°C and

washed 4 times with ice cold acetone with centrifugations at 16,000 g for

5 min at 4°C. Histone pellet air-dried for 20 min at room temperature and

dissolve histone pellet in appropriate volume of ddH2O.

7. Annexin V/PI assay and Flow cytometry

Apoptosis was assessed using Annexin V-PI double staining according to

the manufacturer (BD, San Jose, CA, USA). After treatments, cells were

trypsinized, and stained with 0.5 mg/ ml Annexin V in binding buffer (10

mM HEPES free acid, 0.14 M NaCl, and 2.5 mM CaCl2) for 30 min.

Afterward, PI (5 mg/mL final concentration) was added and incubated for

another 15 min. Cells were applied to a flow cytometer (Beckman

Dickinson) for data collection.

8. Western Blot

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Cells were rinsed twice with ice-cold PBS and were then extracted with

NP-40 lysis buffer (0.5% NP-40, 50 mM Tris-HCl pH 7.4, 120 mM NaCl,

25 mM NaF, 25 mM glycerol phosphate, 1 mM EDTA, 5 mM EGTA, and

Complete protease inhibitor cocktail tablet (Roche, Basel, Switzerland).

Cells were collected and centrifuged at 15,000 g for 15 min at 4°C. Protein

concentration was measured with a BCA protein assay kit (Thermo

Scientific Pierce, Rockford, IL, USA). Cell lysates containing 10-50 µg of

total protein were subjected to SDS-PAGE on 8-12% slab gels, and

proteins were transferred to nitrocellulose membranes. Membranes were

blocked for 1 h in PBS containing 0.1% Tween-20 and 10% (v/v) horse

serum and incubated overnight with the primary antibody. The membranes

were then washed with 0.1% Tween-20/PBS and incubated for 1 h with an

anti-rabbit/mouse secondary antibody coupled to HRP; bound antibodies

were detected with the ECL western blotting analysis system (Thermo

Scientific Pierce, Rockford, IL, USA).

9. Small interfering RNA (siRNA) transfection

The following siRNA were used: control luciferase siRNA and HDAC6

siRNA (Santa Cruz, sc-35544). For transfection, cell grown to 80%

confluence and then transfected with siRNA (100 nM) using RNAiMAX

Lipofectamine reagent (Invitrogen, USA) by following the manufacturer’s

instructions. Cells were incubated with the siRNA-RNAiMAX complex for

24 h. The medium was then replaced with fresh serum-free medium for 24

h prior to A452 and other anticancer agent treatments.

10. Analysis of gene expression by qRT-PCR

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A two-step approach was taken in which the initial reverse transcription

was followed by the quantitative PCR amplification. Total RNA was

extracted from cells using the TRIzol Reagent (Invitrogen, USA),

RNAsecure™ (Ambion, Austin, Tex, USA) and Turbo™ DNase (Ambion,

Austin, Tex, USA) following the manufacturer’s instructions. cDNA derived

from this RNA using SuperScript III Reverse Transcriptase (Invitrogen)

was used as template for quantitative real-time (qRT) PCR performed with

the Applied Biosystems 7500 System (Applied Biosystems, Foster City,

CA, USA). mRNA levels were quantitated using a calibration curve based

on known dilution of concentrated cDNA. mRNA values were normalized to

that of GAPDH.

11. Statistical analysis

All data are presented as mean ± S.E.M. from three or four independent

experiments. Statistical differences were determined by a student t test.

Statistical significance is displayed as *(P < 0.05), * * (P < 0.01) or * * * (P

< 0.001).

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12. Real Time PCR Primer sequences

Gene Primer sequence (5’ - 3’)

p21 Forward : CACCGAGACACCACTGGAGG

Reverse : GAGAAGATCAGCCGGCGTTT

MDM2 Forward : ATCTTGGCCAGTATATTATG

Reverse : GTTCCTGTAGATCATGGTAT

PUMA Forward : GACCTCAACGCACAGTA

Reverse : CTAATTGGGCTCCATCT

TSP1 Forward : CCCGTGGTCATCTTGTTCTGT

Reverse : TTTCTTGCAGGCTTTGGTCTCC

p53 Forward : GAGGGATGTTTGGGAGATGTAAGAAATG

Reverse : TTCACAGATATGGGCCTTGAAGTTAGAGAA

BAX Forward : TCTACTTTGCCAGCAAACTGG

Reverse : TGTCCAGCCCATGATGGTTCT

GADD45 Forward : TGCGAGAACGACATCAACAT

Reverse : TCCCGGCAAAAACAAATAAG

GAPDH Forward : CATGAGAAGTATGACAACAGCCT

Reverse : AGTCCTTCCACGATACCAAAGT

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Result

1. A452 is an effective HDAC6 inhibitor

γ-lactam based HDAC6 inhibitor, A452, is selective to in various human

cancer cells 33. The binding mode of A452 is similar to that of trichostatin

A (TSA), a pan-HDAC inhibitor: zinc ion in the active site is chelated with

hydroxamic acids and naphthyl moiety as cap group lies in hydrophobic

surface of the HDAC enzyme (Fig. 1A). Frist, we tested the effect of A452

on HDAC6 substrate in a panel of cancer cells. A452 showed good

inhibitory activity of HDAC6, as evidenced by increased level of

acetylated α-tubulin, known substrates of HDAC6 (Fig. 1B). Among the

cancer cells, we focused on human colorectal cancer (CRC) which showed

differential inhibitory effect of HDAC6 by A452 and high relapse,

metastasis and mortality rates. In CRC HCT116 and HT29 cells, HDAC6

inhibition with A452 resulted in the accumulation of acetylated α-tubulin

in a concentration-dependent manner at 24 h but not acetylated histones

(Fig. 1C-1F). Treatment with the clinically licensed broad-spectrum

inhibitor, SAHA, also increased acetylation of α-tubulin (Fig. 1C) and

histone H3 (data no shown). These results represent that A452 is a

specific HDAC6 inhibitor.

2. A452 Inhibits cell growth and viability of transformed but

not normal cells

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We examined the effect of A452 on cell growth and viability in CRC

HCT116 and HT29 cells. Cells were cultured with A452 for 72 h and

measured cell viability by MTT assay. A452 resulted in a drug

concentration-dependent decrease of the cell viability (Fig. 2A, 2B). Also,

inhibition of cell growth was a concentration dependent (Fig. 2E, 2F). Cells

were cultured with 0.5, 1, or 2 μM of A452, conventional chemotherapeutic

drugs, topoisomerase I inhibitor irinotecan, DNA synthesis inhibitor

capecitabine (a prodrug of 5-fluorouracil), DNA-damaging agent cisplatin

for colon cancer as well as a pan-HDAC inhibitor, SAHA for up to 72h.

Culture with 2 μM A452 resulted in a 88% and 72% loss of cell viability in

HCT116 and HT29 cells respectively after 72h (Fig. 2G and 2H). A452-

induced cell death was markedly higher compared with other

chemotherapeutic agents (cisplatin; 17% vs 13%, irinotecan; 48% vs 36%,

capecitabine; 65% vs 48% in HCT116 and HT29 cells, respectively).

Next, we determined the effect of A452 on cell viability of normal

human foreskin fibroblast BJ and other transformed (LNCaP, human

prostate adenocarcinoma; A549, lung adenocarcinoma; and MCF7, breast

adenocarcinoma) cells cultured with 0.5, 1, or 2 μM A452 for up to 72 h.

A452 decreased cell viability of transformed cells in a concentration-

dependent manner but not that of normal cells (Fig. 3A-3D). In normal and

transformed cells, A452 caused accumulation of acetylated α-tubulin,

substrate of HDAC6 (Fig. 3E). Taken together, these findings show that

A452 induces cell death in various transformed but not normal cells.

3. A452 induces caspase-dependent apoptosis

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To investigate the pathway of cell death in CRC cells cultured with the

A452, the poly(ADP ribose) polymerase (PARP) and its proteolytic

fragments were assayed. PARP is a 116 kDa nuclear protein that is

specifically cleaved by caspase-3 into a 85 kDa fragment and serves as a

marker of apoptosis 34. In both HT29 and HCT116 cells cultured with 2 μM

A452, the level of full-length PARP decreased, with an increase in cleaved

PARP (Fig. 4A and 4B). To further confirm our result, flow cytometry

analysis was employed to detect apoptotic population in cells exposed to

A452. As shown in Figure 4C and 4D, apoptosis dramatically increased in

CRC cells treated with A452 compared with other chemotherapeutic drugs.

Overall, our results suggest that cell death induced by A452 is, in part,

dependent on caspase activation.

4. A452 induces the accumulation of γH2AX and phos-Chk2

Previous report demonstrated that the HDAC6-selective inhibitor, tubacin,

causes accumulation of phosphorylated histone H2AX (γH2AX), an early

indicator of DNA double-strand breaks (DSB), in transformed cells 35. We

tested whether selective inhibition of HDAC6 with A452 activates a DNA

damage response. A452 increased the accumulation of DNA damage in

both HT29 and HCT116 cells (Fig. 4E and 4F). In particular, the level of

γH2AX upon 2 μM A452 treatments was higher in HCT116 cells compared

with HT29 cells.

Next, we assessed the activation of the checkpoint kinase Chk2

which is phosphorylated on Thr68 in response to DNA damage and has

been implicated in both G1 and G2 checkpoint activation 36. Culture with

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A452 did not significantly activate Chk2, as shown by the level of

phospho-Chk2 (Fig. 4E and 4F).

5. A452 modulates p53 by upregulating wild type p53 and

downregulating mutant p53 in CRC cells

The tumor suppressor p53 plays an essential role in cell growth arrest and

apoptosis in tumors. Mutant p53 cancers are dependent on their

hyperstable mutant p53 protein for survival but not normal cells 37,38. To

analyze whether inhibition of HDAC6 by A452 has an effect on wild and

mutant p53 expression, panel of human colon cancer cell lines harboring

either wild or mutant p53 were analyzed by immunoblots. As shown in

Figure 5A, A452 strongly upregulated levels of wild p53 protein while

downregulated the various aberrantly accumulated mutant p53 proteins in

all cases. A452 treatment increased the levels of MDM2 in mutant p53, but

not wild p53 cells. In HCT116 cells, A452-mediated upregulation of wild

p53 by low micromolar concentrations was dose-dependent at the mRNA

and protein levels. This effect correlated with induction of mRNA and

protein levels of downstream target genes such as p21, BAX and PUMA

(Fig. 5B and 5C). In contrast, inhibition of HDAC6 reduced mutant p53

protein levels in HT29 cells in a dose-dependent manner while the mRNA

level remained unchanged. A452 caused induction of downstream target

genes MDM2, BAX and GADD45 while reduction of PUMA (Fig. 5B and

5D). Taken together, our results indicate that expression level of p53 was

differently regulated by HDAC6.

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6. A452 sensitizes human colon cancer cells to cell death

induced by SAHA, cisplatin, irinotecan, or capecitabine

Because a HDAC6-specific inhibitor tubacin synergizes with the cytotoxic

anticancer drugs in prostate cancer and lung cancer 35, we set out to

identify therapeutic combinations of a new potent HDAC6-specific

inhibitor and cytotoxic drugs in colon cancer cells. To do this, we tested

the cell death-inducing effects of A452 in combination with cisplatin,

irinotecan, capecitabine and SAHA in HT29 and HCT116 cells. A452

pretreatment substantially increased other cytotoxic drugs-induced cell

death (Fig. 6A and 7A). This effect was more evident in HCT116 (wild p53)

cells compared with HT29 (mutant p53) cells. To further confirm these

results, cells were treated with either A452 or in combination with other

anticancer drugs for colon cancer In HCT116 and HT29 cells and then

MTT assay performed to measure cell viability. The combination of 0.1

μM A452 with 0.2 μM SAHA increased cell death compared with cultures

with SAHA alone (Fig. 6B) in HCT116. This combined treatment resulted

in a 51.5% loss of cell viability after 72 h (Fig. 6B). HCT116 cell death

was markedly enhanced in cultures with 0.1 μM A452 and 0.5 μM

irinotecan (60%) compared with cultures with irinotecan alone (Fig. 6B). In

contrast, A452 had no detectable effect of cell viability when combined

with ciaplatin and capecitabine in HCT116 cells. Higher concentration of

A452 (2 μM) rendered hypersensitivity to cell death in HCT116. In

addition HCT116, the combination of 0.2 μM A452 with 0.5 μM SAHA

increased cell death compared with cultures with SAHA alone (Fig. 7B) in

HT29 cells. This combined treatment resulted in a 66% loss of cell

viability after 72 h (Fig. 7C). HT29 cell death was markedly enhanced in

cultures with 0.2 μM A452 and 5.0 μM irinotecan compared with cultures

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with irinotecan alone. Similarly, HT29 cell death was enhanced in culture

with 0.2 μM A452 plus 10 μM capecitabine compared with culture with

capecitabine alone. HT29 is a human colon cancer cell line that is

relatively resistant to cisplatin- and oxaliplatin-induced cell death 39.

HT29 cells cultured with a combination of cisplatin plus A452 did not

cause to synergically induce cell death (Fig. 7B). In a higher concentration

of A452 (2.0 μM), we obtained similar synergic effect of cell death induced

by A452. A452 also increased the sensitivity of MCF7 cells to SAHA-,

irinotecan- and capecitabine-induced cell death (Fig. 7D). Therefore,

these results indicate that A452 enhances transformed cell death induced

by the anticancer drugs.

7. Down-regulation of HDAC6 expression increases

sensitivity to cell death induced by SAHA, irinotecan or

capacitabine

We next determined whether CRC cells in which HDAC6 expression was

genetically suppressed were more sensitive than WT cells to SAHA,

cisplatin, irinotecan, or capacitabine-induced cell death. siRNA targeting

against HDAC6 resulted in reduced HDAC6 levels and increased

acetylated α-tubulin in HCT116 and HT29 cells (Fig. 8A, 8B). Knockdown

of HDAC6 resulted in a decrease in the rate of cell growth (Fig. 8C and 8D)

and increased cell death. HDAC6 knockdown of HT29 cells cultured with

SAHA, irinotecan, or capecitabine for 72 h resulted in 48%-55% cell death

compared with approximately HDAC knockdown (38%) alone and 13%

cells death in WT and scramble siRNA transfected HT29 cells (Fig. 8E).

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8. Culture with A452 plus SAHA, cisplatin, irinotecan or

capecitabine enhances caspase-dependent apoptosis in

CRC cells

To investigate the pathway of cell death in CRC cells cultured with the

combination of A452 and SAHA, cisplatin, irinotecan or capecitabine, the

poly(ADP ribose) polymerase (PARP) and its proteolytic fragments were

assayed. In cells cultured with A452 and SAHA, the level of cleaved PARP

increased in both HCT116 and HT29 cells (Fig. 9A, 9B). Similarly, cells

cultured with the combination of A452 and cisplatin or irinotecan induced

PARP degradation. In case of capecitabine, PAPR the most cleaved in

combination with A452. To further confirm our result, flow cytometry

analysis was employed to detect apoptotic population in cells exposed to

A452 in combined treatments. As unexpected, apoptosis did not

synergically induce in CRC cells treated with A452 combination with other

chemotherapeutic drugs.

9. A452 enhances the accumulation of γH2AX and phos-

Chk2 induced by SAHA, irinotecan or capecitabine

We tested whether selective inhibition of HDAC6 with A452 activates a

DNA damage response in combination with anticancer agents in CRC cells.

Combination of A452 with SAHA, cisplatin, irinotecan, or capecitabine

synergically increased the accumulation of γH2A compared with compound

alone in HT29 cells (Fig. 9F). In particular, the combination of A452 with

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capecitabine resulted in a more marked accumulation of γH2AX than in

cells cultured with compound alone. In HCT116, combination of A452 with

other anticancer agents resulted in increased level of γH2A nevertheless

A452 alone very strongly elevated level of γH2AX (Fig. 9E).

Next, we assessed the activation of the checkpoint kinase Chk2

which is a DNA damage marker. Combination of A452 with irinotecan or

capecitabine enhanced in the activation of Chk2, as shown by an increase

of phospho-Chk2 (Fig. 9F). Thus, HDAC6 inhibition can potentiate the

DNA damage and checkpoint response induced by irinotecan or

capecitabine in wild p53 HT29 cells.

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Figure 1. A452 is a specific-HDAC6 inhibitor

(A) Chemical structure of A452 and orientation of A452 (yellow) and TSA

(green) to the catalytic site of HDAC2. (B) Various human cancer cells

were treated 50 nM of A452 for 24 h. Western blot analysis probing with

antibodies against acetylated α-tubulin (Ac-tub) and α-tubulin. HCT116

(C) and HT29 (D) cells were treated A452 as indicated concentrations for

24 h and performed western blot analysis probing with antibodies against

acetylated α-tubulin (Ac-tub), α-tubulin and HDAC6. (E) and (F) HT29

cells were cultured for 24 h with A452, SAHA, and A452 plus SAHA as

indicated concentrations and performed western blot analysis with

antibodies against acetylated α-tubulin (Ac-tub), α-tubulin, acetylated

histone H3 (Ac-H3) and histone H3. α-Tubulin and histone H3 are shown

as loading controls.

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Figure 2. Effects of A452 on cell growth and viability and

acetylated patterns of proteins in HCT116 and HT29 cells

HCT116 (A) and HT29 (B) cells were cultured with indicated doses of

A452 for 72h and MTT assays were performed to analyze viability.

HCT116 (C) and HT29 (D) cells were cultured for 24 h with 0.5, 1.0, 2.0 μ

M A452 or 5 μM SAHA. SAHA is a positive control. Cell lysates were for

prepared for immunoblot analysis of α-tubulin (Ac-tub) and α-tubulin. α-

Tubulin is a loading control. Cell growth and viability of HCT116 (E, G)

and HT29 (F, H) cells cultured with A452 (0.5, 1.0, 2.0 μM), SAHA (5 μM),

cisplatin (10 μM), irinotecan (5 μM), or capecitabine (10 μM). Inhibition of

cell growth of HCT116 and HT29 cells is concentration-dependent. Viable

cell numbers were evaluated by CCK-8 reagent and viability was

measured by MTT assay. Data are expressed as mean ± SEM from three

independent experiments.

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Figure 3. Effects of A452 on cell viability and acetylated

patterns of tubulin in normal and other transformed cells

Transformed (MCF7 (A), LNCaP (B) and A549 (C)) and normal BJ (D))

cells were cultured with indicated doses of A452 for 72 h. SAHA, pan-

HDAC inhibitor, is a positive control. Viable cells were evaluated by MTT

assay. (E) A452 causes accumulation of acetylated α-tubulin in normal and

transformed cells. Cells were cultured with 0.5, 1.0, 2.0 μM A452 or 5 μM

SAHA for 24 h as indicated. Cell lysates were prepared for immunoblot

analysis of indicated antibodies. α-Tubulin is a loading control.

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Figure 4. A452 induces apoptosis and accumulation of γH2AX in

colon cancer cells

HCT116 and HT29 cells were cultured with indicated compounds for 24 h.

Western blot analysis show PARP degradation, phosphorylated γH2AX and

phosphorylated Chk2 in HCT116 (A, E) and HT29 (B, F) cells. α-Tubulin

is shown as a loading control. HCT116 (C) and HT29 (D) cells were

treated with A452, SAHA, cisplatin, irinotecan or capecitabine as indicated

for 48 h and stained with Annexin V and propidium iodide (PI) for 15 min.

Apoptosis induced by these compounds was then assessed by flow

cytometry analysis. Data are expressed as mean ± SEM from three

independent experiments.

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Figure 5. A452 regulate p53 in colon cancer cells

Expression of p53 and p53 target gene was analyzed by western blot (A)

and real-time RT-PCR (B) in HCT116 and HT29 cells treated with

indicated doses of A452 for 24 h.

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Figure 6. A452 enhances cell death induced by SAHA,

irinotecan, or capecitabine in transformed HCT116 cells

Dead cells were quantified in HCT116 cells treated with A452 (50 nM) for

48 h and then for an additional 24 h in the presence of SAHA (2.5 μM),

cisplatin (10 μM), irinotecan (5 μM), capecitabine (10 μM), etoposide (20

μM) and Adriamycin (1 μM). Data is expressed as the percentage of dead

cells. (B and C) HCT116 cells were cultured with A452, SAHA, cisplatin,

irinotecan, capecitabine or in combination with these compounds as

indicated for 72 h. Cell viability was measured by MTT assay. Data are

expressed as mean ± SEM from three independent experiments.

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Figure 7. A452 enhances cell death induced by SAHA,

irinotecan, or capecitabine in transformed HT29 cells

(A) Dead cells were quantified in HT29 cells treated with A452 (200 nM)

for 48 h and then for an additional 24 h in the presence of SAHA (5 μM),

cisplatin (10 μM), irinotecan (5 μM), capecitabine (10 μM), etoposide (20

μM) and Adriamycin (1 μM). Data is expressed as the percentage of dead

cells. HT29 (B, C) and MCF7 (C) cells were cultured with A452, SAHA,

cisplatin, irinotecan, capecitabine or in combination with these compounds

as indicated for 72 h. Cell viability was measured by MTT assay. Data is

expressed as mean ± SEM from three independent experiments.

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Figure 8. Down-regulation of HDAC6 expression in HT29 cells

results in increased sensitivity to cell death induced by SAHA,

irinotecan, or capecitabine

Western blot analysis of HCT116 (A) and HT29 (B) cells expressing

siRNA targeting HDAC6 and non-targeting scramble siRNA. Cell growth

and viability of HCT116 (C) and HT29 (D, E) cells cultured with siRNA

targeting HDAC6 with SAHA, cisplatin, irinotecan or capecitabine have no

synergy effect. Data is expressed as mean ± SEM from three independent

experiments.

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Figure 9. A452 enhances SAHA-, irinotecan-, or capecitabine-

induced cell death

HCT116 (A, E) and HT29 (B, F) cells were treated with indicated doses of

compounds for 24 h. Western blot analysis shows PARP degradation,

phosphorylated γH2AX and phosphorylated Chk2. α-Tubulin is shown as a

loading control. HCT116 (C) and HT29 (D) cells were treated with A452,

SAHA, cisplatin, irinotecan or capecitabine as indicated for 48 h and

stained with Annexin V and propidium iodide (PI) for 15 min. Apoptotic

cells were then measured by FACS analysis. Data is expressed as mean ±

SEM from three independent experiments.

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Discussion

In this study, we show that selective chemical inhibitor of HDAC6 induces

cell death and significant growth inhibition in transformed cancer cells.

A452 differentially modulates p53, resulting in cell growth inhibition and

cell death. Also, A452 results in sensitivity of cancer cells to the anti-

cancer agents irinotecan and capecitabine or pan-HDAC inhibitor SAHA.

This effect is not observed in normal cells. These findings show that, at

concentration of SAHA, irinotecan, or capecitabine that are clinically

attainable and tolerated 5,40, HDAC6-selective inhibition can enhance the

therapeutic efficacy of these agents in certain transformed cells.

Recent studies suggested that HDACI including SAHA interact

synergically with cytotoxic agents, such as doxorubicin and etoposide, to

dramatically increase mitochondrial injury and apoptosis in leukemia and

lung cancer cells 35. The antitumorigenic properties of HDACI are

especially notable due to the fact that their cytotoxic effects are usually

specific to cancer cells but to normal cells. We found that selective-

HDAC6 inhibitor A452 alone significantly inhibited CRC growth, but when

combined with SAHA, irinotecan, or capecitabine, it further enhanced the

anti-tumor effects against the different CRC cell lines. There is very

limited information in HDACI in combination with other anti-tumor agents

against CRC. Our data for the first time have demonstrated a synergic

effect of selective-HDAC6 inhibitor and other anti-cancer agent in

inhibition of CRC.

The selective-HDAC6 inhibitor A452 was found to cause

accumulation of γH2AX, a marker of DNA DSBs. The combination of A452

plus SAHA, irinotecan or capecitabine markedly increased the

accumulation of γH2AX and phosphor-Chk2 in colon cancer cells. These

results suggest that HDAC6 inhibition increased SAHA, irinotecan or

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capecitabine induced accumulation of DNA DSBs, which may explain, in

part, the chemosensitizing effect of HDAC6 inhibition in colon cancer cells.

Synergistic and additive tumor cell apoptosis has been observed when

combing pan-HDAC inhibitors with cytotoxic therapies that induce DNA

damage 41,42, Enhanced DNA damage observed in culture with combined

inhibitors has been attributed to induction of histone hyperacetylation by

the HDAC inhibitor, resulting in a more open chromatin structure, making

DNA more susceptible to damage by various toxic agents. Pan-HDAC

inhibitors such as SAHA can suppress DNA repair proteins in transformed

cells, resulting in failure to repair DNA damage 43-45. In contrast to pan

HDACI, selective-HDAC6 inhibitor may possess different mechanism of

action in suppressing DNA repair proteins. First, A452 induced

accumulation of DNA breaks in HT29 cells cultured with A452 may result

in part from an impaired capacity for DNA DSB repair. Several proteins

involved in the DNA damage repair pathway are targets of lysine

acetylation 46, and acetylation of DNA repair proteins has been shown to

alter their activity 47,48. Second, target proteins of HDAC6 include the

chaperone protein HSP90 14,49. Acetylation of Hsp90 impairs its chaperone

function and exposes its client proteins such as DNA repair proteins to

degradation, resulting in defective DNA repair and cell death.

We found that A452 markedly enhanced SAHA-, irinotecan- or

capecitabine-induced transformed cell apoptosis, as evidenced by

increased PARP cleavage and caspase-dependent cell death. In light of the

findings that (a) A452 induced more cell death in HCT116 cells bearing

wild p53, (b) HDAC6 inhibitor can lead to upregulation of p53, we

rationally assumed that the combined treatment with A452 and other anti-

cancer agents increased apoptosis probably via inducing p53 expression in

HCT116. In contrast, HT29 cells bearing mutant p53 induced cell death via

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differently modulating of mutant p53 by A452. The highly accumulated

mutant p53 protein, a hallmark of almost 50% of human tumors, is a

clinically relevant target for intervention. It is the hyperstability of mutant

p53 that is the basis for its gain of function and dominant-negativity (over

wild p53 in case of heterozygosity) that promotes malignancy and

chemoresistance 50. Aberrant accumulation of mutant p53 does not occur

in normal cells 37 but is tumor-specific due to massive upregulation of

HSP90 chaperone machinery that almost ubiquitously accompanies

malignant transformation 51,52. Depletion of mutant p53 was shown to

decrease tumor cell proliferation in vitro and in xenografts, inhibit invasion

and metastasis, and sensitize tumor cells towards genotoxic therapy 53-56.

Li et al. show that SAHA preferential cytotoxicity in mutant p53 cancer

cells by destabilizing mutant p53 through inhibition of the HDAC6-HSP90

complex 57. In consistent with this finding, our data showed that selective

HDAC6 inhibitor A452 enhanced cell death in mutant p53 HT29 cells by

destabilizing mutant p53 protein. Like SAHA, A452 probably may

destabilize mutant p53 via preventing formation of HDAC6-Hsp90 complex

and stabilizing MDM2, resulting in degradation of mutant p53. Thus, this

data suggest that A452 leads to cell death by reduction of hyperstable

mutant p53 in mutant p53 bearing cancer cells and by increase of wild p53

in wild p53 bearing cancer cells. However, more evidences should be

obtained to verify the possibility. Because cancer cells that overexpress

mutant p53 are generally highly resistant to conventional

chemotherapeutic drugs, destabilization of mutant p53 is indeed an

effective strategy for treating these cancer cells. Therefore, HDAC6

inhibitor, by virtue of depleting mutant p53 or increasing wild p53, could

become centerpiece in anticancer therapy.

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In summary, we discovered a HDAC6-selective inhibitor, A452,

that has the potential to enhance anticancer drug efficacy in combination

therapy of human cancers, The present findings suggest that combination

therapy with a selective HDAC6 inhibitor and certain anticancer agents

may be a strategy for therapy of sensitive tumors while sparing normal

cells. The chemosensitization of anti-cancer agents by A452 has

significant potential in CRC chemotherapy. Further studies are necessary

to confirm our findings in patients with advanced CRC.

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국문요약

대장암 치료에서의 기존 항암제와 HDAC6

inhibitor 와의 combination therapy 에 대한 연구

신 동 희

연세대학교 일반대학원

약학과

탈아세틸화 효소 중에서 가장 잘 알려진 histone deacetylase 6 (HDAC6)는

cytoplasmic enzyme 으로써 생체 내의 중요한 반응들을 조절하고 관여한다.

HDAC inhibitor (HDACI)는 임상에서 암 치료에 사용 중인 여러 화학

약물들과의 병영투여를 통해 현재 굉장히 좋은 치료제로 주목 받고 있다. 이

연구에서는 γ-lactam base 의 구조를 가지고 HDAC6 를 특이적으로 억제하는

A452 를 이용하여 연구를 진행하였다. A452 는 암세포인 HCT116, HT29,

LNCaP, MCF, A549 cell 에서 세포 죽음과 성장 억제 효과를 보인 반면,

정상세포 BJ cell 에서는 그 효과를 나타내지 않았다. 또한 A452 는 대장암

세포주에서 p53 의 wild / mutant type 에 따라 다른 세포독성을 나타냈다.

이는 A452 가 서로 다른 type 의 세포에서 다른 mechanism 을 거쳐 p53 을

조절하는 것으로 예상된다 (wild type p53 을 가지는 cell 에서는 Mdm2 를

불안정하게 해서 p53 을 증가시키고, mutant type p53 을 가지는 cell 에서는

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Mdm2 를 안정하게 해서 p53 을 감소시킨다). A452 는 대장암 세포주에서

pan-HDAC inhibitor 인 SAHA, topoisomerase I inhibitor 인 irinotecan,

그리고 DNA synthesis inhibitor 인 capecitabine 에 의해서 세포죽음을

증가시킨다. 이 약물들과 A452 와의 병영효과는 하나의 약물만 처리했을

때보다 두 약물을 같이 처리 했을 때의 PARP 의 잘린 형태를 통해서 알 수

있다. 또한 H2AX 의 phosphorylation 이 증가하는 것을 통해서 DNA

damage 도 증가시킨다는 것을 확인 하였다. 하지만 기존 약물인 cisplatin 은

A452 의 세포독성 효과를 증가시키지 않았다. 즉, A452 는 HDAC6 를

선택적으로 억제시키는 약물이고, 대장암 세포주에서 A452 의 효과는 몇몇의

약물들에 의해서 증가된다.

핵심 단어 : Histone deacetylase 6, HDAC6-selective inhibitor,

anticancer agent, apoptosis, colorectal cancer