Science is a moving target

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NCE IS A MOVING TA ience, Team Science the Data Deluge and More

description

This presentation will be structured around the research cycle, beginning with experimental hypothesis, moving to data collection, analysis/writing, publication and finishing with scientific networking and collaboration. As we walk through the cycle, we will introduce and discuss many of the concepts that shape modern research. From big data, small data, curation and ontologies to open laboratory notebooks and team science initiatives, participants will come away with a working knowledge of the key issues surrounding eScience. Jackie Wirz, PhD, Biomedical Research Specialist & Assistant Professor, Oregon Health & Science University Amanda Whitmire, PhD, Data Management Specialist & Assistant Professor, Oregon State University Please note: We used non-standard fonts and several large image files: the result is that this presentation does not look great in Slideshare. If you would like high quality slides, please let us know! Also, the notes are minimal: Jackie will go back and annotate her slides in the future.

Transcript of Science is a moving target

  • 1. SCIENCE IS A MOVIN eScience, Team Science the Data Deluge and More
  • 2. Hello there!
  • 3. 1 | Research 101 2 | The Cycle 3 | +Library
  • 4. Jackie
  • 5. Amanda
  • 6. Research Rocks
  • 7. 1 | Research 101
  • 8. The Research Cycle
  • 9. The Research Cycle
  • 10. The Research Cycle 1. Brilliant Idea! 2. Build Idea 3. Fund Idea 4. Research 5. Compile 6. Share & Store 7. Fame, Fortune
  • 11. The Research Cycle: What people think 1. Brilliant Idea! 2. Build Idea 3. Fund Idea 4. Research 5. Compile 6. Share & Store 7. Fame, Fortune (cure cancer)
  • 12. The Research Cycle: What Really Happens 1. Brilliant Idea! 2. Build Idea 3. Fund Id 4. Research 5. Compile 6. Share & Store 7. Fame, Fortune
  • 13. The Research Cycle: What Really Happens 1. Idea! 2. Build Idea 3.FUND IDEA4.Research 5. Compile 6. Share & Stor 1. Idea #2 2. Try #2 0. Failure!! 1. Idea #896 0. Try Beer 2. Build #896
  • 14. The Research Cycle: What People Think
  • 15. The Research Cycle: What Really Happens
  • 16. escience + eresearch = ewhat?
  • 17. escience: What Is it?
  • 18. eresearch: What Is it?
  • 19. you say tomato
  • 20. tomaytoe tomahto Solanum lycopersicum PANTONE 1795 C tdTomato 554ex 581em $64
  • 21. Data comes in many flavors
  • 22. MetaData comes in many flavors
  • 23. 2 | The Cycle
  • 24. The Research Cycle 1. Brilliant Idea! 2. Build Idea 3. Fund Idea 4. Research 5. Compile 6. Share & Store 7. Fame, Fortune
  • 25. Where do good ideas come from?
  • 26. Hypothesis |incremental |data
  • 27. Literature
  • 28. conferences
  • 29. Thinking (really hard)
  • 30. Group Drinking Thinking
  • 31. The Research Cycle 1. Brilliant Idea! 2. Build Idea 3. Fund Idea 4. Research 5. Compile 6. Share & Store 7. Fame, Fortune
  • 32. Existing data | literature | Databases
  • 33. Existing data | literature | Databases
  • 34. Colleagues Team Science
  • 35. OHSU Schools Resources Shared Research Resources Research Centers Advanced Imaging Research Center Casey Eye Institute Center for Coastal Margin Observation and Prediction Center for Ethics in Health Care Center for Evidence-Based Policy Center for Policy & Research in Emergency Medicine Center for Research on Occupational Environmental Toxicology Child Development and Rehabilitation Center Dotter Interventional Institute Harold Schnitzer Diabetes Health Center Heart Research Center Jungers Center for Neurosciences Research Knight Cancer Institute Layton Aging and Alzheimer's Disease Center Methamphetamine Abuse Research Center OHSU Epilepsy Center One Sky Center Oregon Brain Institute Oregon Center for Aging and Technology Oregon Center for Complementary & Alternative Medicine in Neurological Disorders Oregon Clinical and Translational Research Institute Oregon Evidence Based Practice Institute Oregon Health Policy Institute Oregon Hearing Research Center Oregon National Primate Research Center Oregon Stem Cell Center Oregon Stroke Center Parkinson Center of Oregon Portland Alcohol Research Center Research Center for Gender-Based Medicine Vaccine and Gene Therapy Institute Vollum Institute Advanced Computing Advanced Light Microscopy Affymetrix Microarray Illumina Microarray Bioanalytical/Pharmacokinetics Biostatistics DNA Services Electronics and Instrumentation Design Flow Cytometry Histopathology Proteomics Transgenic Mouse Models School of Medicine Behavioral Neuroscience Biochemistry and Molecular Biology Cell and Developmental Biology Molecular and Medical Genetics Molecular Microbiology and Immunology Physiology and Pharmacology Science and Engineering Anesthesiology and Perioperative Medicine Dermatology Diagnostic Radiology Emergency Medicine Family Medicine Medical Informatics and Clinical Epidemiology Medicine Neurological Surgery Neurology Obstetrics & Gynecology Ophthalmology Orthopaedics & Rehabilitation Otolaryngology & Head & Neck Surgery Pathology Pediatrics Psychiatry Public Health & Preventive Medicine Radiation Medicine Surgery Research Pharmacy Departmental Cores Other Resources Clinical Science Dental Clinical Research Center School of Dentistry Hartford Center for Geriatric Nursing Excellence School of Nursing Basic Science School of Pharmacy Cores OHSU Library Science Education and Outreach Center for Diversity and Multicultural Affairs Medical Photography Educational Communications
  • 36. OHSU Schools Resources Shared Research Resources Research Centers Advanced Imaging Research Center Casey Eye Institute Center for Coastal Margin Observation and Prediction Center for Ethics in Health Care Center for Evidence-Based Policy Center for Policy & Research in Emergency Medicine Center for Research on Occupational Environmental Toxicology Child Development and Rehabilitation Center Dotter Interventional Institute Harold Schnitzer Diabetes Health Center Heart Research Center Jungers Center for Neurosciences Research Knight Cancer Institute Layton Aging and Alzheimer's Disease Center Methamphetamine Abuse Research Center OHSU Epilepsy Center One Sky Center Oregon Brain Institute Oregon Center for Aging and Technology Oregon Center for Complementary & Alternative Medicine in Neurological Disorders Oregon Clinical and Translational Research Institute Oregon Evidence Based Practice Institute Oregon Health Policy Institute Oregon Hearing Research Center Oregon National Primate Research Center Oregon Stem Cell Center Oregon Stroke Center Parkinson Center of Oregon Portland Alcohol Research Center Research Center for Gender-Based Medicine Vaccine and Gene Therapy Institute Vollum Institute Advanced Computing Advanced Light Microscopy Affymetrix Microarray Illumina Microarray Bioanalytical/Pharmacokinetics Biostatistics DNA Services Electronics and Instrumentation Design Flow Cytometry Histopathology Proteomics Transgenic Mouse Models School of Medicine Behavioral Neuroscience Biochemistry and Molecular Biology Cell and Developmental Biology Molecular and Medical Genetics Molecular Microbiology and Immunology Physiology and Pharmacology Science and Engineering Anesthesiology and Perioperative Medicine Dermatology Diagnostic Radiology Emergency Medicine Family Medicine Medical Informatics and Clinical Epidemiology Medicine Neurological Surgery Neurology Obstetrics & Gynecology Ophthalmology Orthopaedics & Rehabilitation Otolaryngology & Head & Neck Surgery Pathology Pediatrics Psychiatry Public Health & Preventive Medicine Radiation Medicine Surgery Research Pharmacy Departmental Cores Other Resources Clinical Science Dental Clinical Research Center School of Dentistry Hartford Center for Geriatric Nursing Excellence School of Nursing Basic Science School of Pharmacy Cores OHSU Library Science Education and Outreach CeDMA Medical Photography Educational Communications
  • 37. OHSU Schools + Shared Research Resources Research Centers Advanced Imaging Research Center Casey Eye Institute Center for Coastal Margin Observation and Prediction Center for Ethics in Health Care Center for Evidence-Based Policy Center for Policy & Research in Emergency Medicine Center for Research on Occupational Environmental Toxicology Child Development and Rehabilitation Center Dotter Interventional Institute Harold Schnitzer Diabetes Health Center Heart Research Center Jungers Center for Neurosciences Research Knight Cancer Institute Layton Aging and Alzheimer's Disease Center Methamphetamine Abuse Research Center OHSU Epilepsy Center One Sky Center Oregon Brain Institute Oregon Center for Aging and Technology Oregon Center for Complementary & Alternative Medicine in Neurological Disorders Oregon Clinical and Translational Research Institute Oregon Evidence Based Practice Institute Oregon Health Policy Institute Oregon Hearing Research Center Oregon National Primate Research Center Oregon Stem Cell Center Oregon Stroke Center Parkinson Center of Oregon Portland Alcohol Research Center Research Center for Gender-Based Medicine Vaccine and Gene Therapy Institute Vollum Institute Advanced Computing Advanced Light Microscopy Affymetrix Microarray Illumina Microarray Bioanalytical/Pharmacokinetics Biostatistics DNA Services Electronics and Instrumentation Design Flow Cytometry Histopathology Proteomics Transgenic Mouse Models School of Medicine Behavioral Neuroscience Biochemistry and Molecular Biology Cell and Developmental Biology Molecular and Medical Genetics Molecular Microbiology and Immunology Physiology and Pharmacology Science and Engineering Anesthesiology and Perioperative Medicine Dermatology Diagnostic Radiology Emergency Medicine Family Medicine Medical Informatics and Clinical Epidemiology Medicine Neurological Surgery Neurology Obstetrics & Gynecology Ophthalmology Orthopaedics & Rehabilitation Otolaryngology & Head & Neck Surgery Pathology Pediatrics Psychiatry Public Health & Preventive Medicine Radiation Medicine Surgery Research Pharmacy Departmental Cores Other Resources Clinical Science Dental Clinical Research Center School of Dentistry Hartford Center for Geriatric Nursing Excellence School of Nursing Basic Science School of Pharmacy Cores OHSU Library Science Education and Outreach CeDMA Medical Photography Educational Communications
  • 38. OHSU Schools + Shared Research Resources Research Centers School of Medicine Other Resources Clinical Science School of Dentistry School of Nursing Basic Science School of Pharmacy Cores OHSU Library
  • 39. Colleagues Team Science
  • 40. The Research Cycle 1. Brilliant Idea! 2. Build Idea 3. Fund Idea 4. Research 5. Compile 6. Share & Store 7. Fame, Fortune
  • 41. Money, money, money
  • 42. Where Money Trees Grow
  • 43. How We can Help.
  • 44. How We can Help.
  • 45. The Research Cycle 1. Brilliant Idea! 2. Build Idea 3. Fund Idea 4. Research 5. Compile 6. Share & Store 7. Fame, Fortune
  • 46. Lab Notebooks 0 100 200 300 400 500 600 700 800 900 1000 Number of labs with inventory Total number of labs
  • 47. Lab Notebooks: Next Generation
  • 48. Data management 1. Online resourc 2. workshops 3. consultations 4. coursework 5. Collaboration 6. Data curation
  • 49. Shared vs discoverable vs OPeNDAP
  • 50. Data Tracking | version control
  • 51. Naming conventions Project_instrument_location_YYYYMMDDhhm mss_extra.ext Index/grant conditions Leading zero! s/n, variable Retain order
  • 52. The Research Cycle 1. Brilliant Idea! 2. Build Idea 3. Fund Idea 4. Research 5. Compile 6. Share & Store 7. Fame, Fortune
  • 53. Data does not speak for itself
  • 54. Scientists speak for their data
  • 55. Casual |conference |paper |funding
  • 56. Casual |conference |paper |funding VISUALIZATION
  • 57. Casual |conference |paper |funding Posters / Talks
  • 58. Casual |conference |paper |funding Papers
  • 59. The Research Cycle 1. Brilliant Idea! 2. Build Idea 3. Fund Idea 4. Research 5. Compile 6. Share & Store 7. Fame, Fortune
  • 60. LIBRARY
  • 61. Metrics and altmetrics
  • 62. Torture numbers, and they'll confess to anything. ~Gregg Easterbrook
  • 63. Statistics can be made to prove anything - even the truth. ~Author Unknown
  • 64. Curation & Ontologies
  • 65. The Research Cycle 1. Brilliant Idea! 2. Build Idea 3. Fund Idea 4. Research 5. Compile 6. Share & Store 7. Fame, Fortune
  • 66. Yeah, right.
  • 67. 3 | +Libraries
  • 68. Hello there! how can we best Integrate With the Research Cycle?
  • 69. LIBRARIAN STEROTYPE Dont think like this
  • 70. [Jackie][Geeks] [ONTOLOGY] [DATA Curation] [Scholarly Communication] [MLIS] LIBRARIAN STEROTYPE We Already Do! [Amanda]
  • 71. Just as writers read to sculpt their skill, visualizers lookLook around you. Jessica Hagy You are looking at opportunity.
  • 72. Thank You
  • 73. Contact us! [email protected] amanda.whitmire@oregonstate. edu
  • 74. Shameless PlugS! Knowledgeomics: The Art and Science of Scholarship and Research March 15th, 2013 @ OHSU, UW, U Utah
  • 75. questions?
  • 76. SCIENCE IS A MOVIN eScience, Team Science the Data Deluge and More
  • 77. 1 | Research 101 2 | The Cycle 3 | +Library