School of Aquatic & Fishery Sciences Seattle, Washingtondepts.washington.edu/fish437/resources/Week...

20
University of Washington School of Aquatic & Fishery Sciences Seattle, Washington To: Alaska Sea Grant College Program University of Alaska - Fairbanks Title of Project: Acoustic Behavior of Salmon Principal Investigators: John K. Horne Research Associate Professor School of Aquatic & Fishery Sciences Box 355020 University of Washington Seattle, WA 98195-5020 (206) 221-6890 – phone (206) 221-6939 - fax [email protected] Institutional Official: Carol Zuiches Assistant Vice Provost - Research Office of Sponsored Programs University of Washington 1100 NE 45 th Street, Suite 300 Seattle, WA 98105 206-543-4043 [email protected] Amount Requested: $60,236 Desired Period: February 1, 2006 – January 31, 2009 Date:______________ ___________________________________ John K. Horne, Research Associate Professor Date:_______________ __________________________________ David A. Armstrong, Director School of Aquatic & Fishery Sciences Date:______________ ___________________________________ Carol Zuiches Assistant Vice Provost – Research Executive Director, Office of Sponsored Programs

Transcript of School of Aquatic & Fishery Sciences Seattle, Washingtondepts.washington.edu/fish437/resources/Week...

  • University of Washington

    School of Aquatic & Fishery Sciences Seattle, Washington

    To: Alaska Sea Grant College Program University of Alaska - Fairbanks Title of Project: Acoustic Behavior of Salmon Principal Investigators: John K. Horne Research Associate Professor School of Aquatic & Fishery Sciences Box 355020 University of Washington Seattle, WA 98195-5020 (206) 221-6890 – phone (206) 221-6939 - fax [email protected] Institutional Official: Carol Zuiches Assistant Vice Provost - Research Office of Sponsored Programs University of Washington 1100 NE 45th Street, Suite 300 Seattle, WA 98105 206-543-4043 [email protected] Amount Requested: $60,236 Desired Period: February 1, 2006 – January 31, 2009 Date:______________ ___________________________________ John K. Horne, Research Associate Professor Date:_______________ __________________________________ David A. Armstrong, Director School of Aquatic & Fishery Sciences Date:______________ ___________________________________ Carol Zuiches

    Assistant Vice Provost – Research Executive Director, Office of Sponsored Programs

    University of Washington

    School of Aquatic & Fishery Sciences

    Seattle, Washington

    To:Alaska Sea Grant College Program

    University of Alaska - Fairbanks

    Title of Project:Acoustic Behavior of Salmon

    Principal Investigators:John K. Horne

    Research Associate Professor

    School of Aquatic & Fishery Sciences

    Box 355020

    University of Washington

    Seattle, WA 98195-5020

    (206) 221-6890 – phone

    (206) 221-6939 - fax

    [email protected]

    Institutional Official:Carol Zuiches

    Assistant Vice Provost - Research

    Office of Sponsored Programs

    University of Washington

    1100 NE 45th Street, Suite 300

    Seattle, WA 98105

    206-543-4043

    [email protected]

    Amount Requested:$60,236

    Desired Period:February 1, 2006 – January 31, 2009

    Date:_________________________________________________

    John K. Horne, Research Associate Professor

    Date:_________________________________________________

    David A. Armstrong, Director

    School of Aquatic & Fishery Sciences

    Date:_________________________________________________

    Carol Zuiches

    Assistant Vice Provost – Research

    Executive Director, Office of Sponsored Programs

    SEA GRANT PROJECT SUMMARY

    INSTITUTION:

    Alaska Sea Grant College Program

    ICODE:

    TITLE:

    ACOUSTIC BEHAVIOR OF SALMON

    PROJECT NUMBER:

    2005

    -

    33

    REVISION DATE:

    May 13, 2005

    PROJECT STATUS:

    INITIATION DATE:

    Feb. 2006

    COMPLETION DATE:

    Dec. 2008

    SUB PROGRAM:

    PRINCIPAL INVESTIGATOR:

    John K. Horne

    EFFORT:

    AFFILIATION:

    University of Washington

    School of Aquatic and Fishery Sciences

    AFFILIATION CODE:

    SG FUNDS:

    $

    60,236

    STATE MATCHING FUNDS:

    $

    40,634

    LAST YEARS SG FUNDS:

    $

    0

    LAST YEARS MATCHING FUNDS:

    $

    0

    PASS

    -

    THROUGH FUNDS:

    $

    0

    LAST YEARS PASS THROUGH FUNDS:

    $

    0

    RELATED PROJECTS:

    PARENT PROJECTS:

    SEA GRANT STRATEGIC PLAN CLASSIFICATION#:

    3 Fisheries

    KEYWORDS:

    salmon, acoustic assessment, species discrimination, student training

    OBJECTIVES:

    This program will combine the use of two acoustic technologies to examine the influence of fish behavior on the

    amplitude and shape of reflected sound from s

    almon in rivers. Primary research objectives include:

    1. Characterizing variability in backscattered echo amplitude and shape

    2. Determining the influence of behavior on echo amplitude and shape

    3. Quantifying echo width to fish morphometric relationshi

    p (e.g. length, width)

    4. Examining the potential of using differences in echo characteristics to discriminate Chinook from Sockeye

    Salmon in acoustic data.

    METHODOLOGY:

    A splitbeam echosounder will be synchronized with an imaging sonar to c

    ollect acoustic data on tethered and free

    -

    swimming fish. Metrics will be used to characterize echo shapes and compared to fish orientation.

    RATIONALE:

    Understanding how fish scatter sound improves discrimination of species and the accuracy

    of acoustic

    -

    based

    assessment.

    BENEFITS:

    Results of this project will increase methods to discriminate chinook from sockeye salmon, the understanding of

    how fish in rivers scatter sound, and the accuracy of acoustic

    -

    based escapement assessmen

    t on the Kenai River.

    Proposal Objectives

    This program will combine the use of two acoustic technologies to examine the influence of fish behavior on the intensity and shape of reflected sound from salmon in rivers. Primary research objectives include:

    1. Characterizing variability in backscattered echo amplitude and shape

    2. Determining the influence of behavior on echo amplitude and shape

    3. Quantifying echo width to fish morphometric relationship (e.g. length, width)

    4. Examining the potential of using differences in echo characteristics to discriminate Chinook from Sockeye Salmon in acoustic data.

    This program is also explicitly designed to include training of an Alaskan resident in fisheries acoustics research techniques. Salmon abundance on at least two rivers in Alaska (e.g. Kuskokwim River, Noatak River) is not being assessed using acoustic technologies due to a lack of trained personnel. Alaska’s need for trained fisheries acousticians is great. If an Alaskan student (native or non-native) is trained during this program, it is believed that there is a greater likelihood that the student will return to Alaska and will be an attractive employee for the Alaska Department of Fish and Game (ADF&G), NOAA fisheries, or the fisheries acoustic industry.

    Milestones have been identified for the project. By the end of the first year, the graduate student will have completed two quarters of course work and participated in the first set of acoustic backscatter measurements in conjunction with ADF&G researchers and staff at the Kenai River sampling site. Data analysis will commence directly after field measurements and continue throughout the duration of the project. Outreach activities will be coordinated in part with the summer field season and extend to the end of the year. By the end of the second year, graduate student coursework will be completed, a second field season will have collected additional data, data from the first field season will be analyzed, and the second round of outreach activities will be well underway. By the end of the third year, the student will complete the Master’s program and outreach activities.

    Justification and Need

    Fixed-location, side-looking acoustic techniques are often the only way to obtain in-season abundance estimates for anadromous fish stocks in rivers that are too wide for weir structures and too occluded for visual observations (Daum and Osborne 1998; Osborne and Melegari 2002; Westerman and Willette 2003). Acoustic assessment sites currently exist on 15 rivers in Alaska. One of the primary barriers to wider use of sonar assessment has been the inability to acoustically discriminate among fish sizes and species (cf. Horne 2000).

    Acoustic techniques used to discriminate and classify fish species traditionally rely on the intensity of reflected sound (i.e. target strength, TS) to determine the size and then species of an insonified target. Using this approach in shallow water, riverine environments include additional challenges (Trevorrow et al. 2000). Boundary effects (i.e. water surface and river bottom) may distort echoes and impede detection of individual animals (Mulligan 2000; Gerlotto et al. 2000). Distances to targets are generally short and when combined with narrow beam angles, violate the point source assumption of reflected energy (i.e. backscatter) from targets because fish are large relative to the beam swath (Dawson et al. 2000). Under these conditions, fish become complex backscatter targets and the intensity and phase of echoes can be corrupted. Variability in fish orientation relative to the transducer when the beam is directed across the river also influences intensity and phase of TS measurements (Love 1969; Dahl and Matthisen 1983; Kubecka 1993; Horne 2003). Acoustic signal to noise ratios are generally low in riverine environments which may bias estimates of fish position within the beam (Kieser et al. 2000) and resulting TS (Fleischman and Burwen 2000). The combination of these factors potentially result in variable TS measurements that makes it difficult, if not impossible, to identify fish species using only target strength as the discriminating metric.

    On the Kenai River in southcentral Alaska, chinook salmon Oncorhynchus tshawytscha migrate concurrently with more numerous sockeye salmon Oncorhynchus nerka. The two species differ in size and migratory behavior: sockeye salmon average less than 60 cm in length and migrate primarily in shallow water close to the river bank; chinook salmon often exceed 100 cm and migrate in deeper water near mid-channel. These differences were used as justification to initiate a chinook salmon sonar assessment program in the late 1980s (Eggers et al. 1995). Currently, the Kenai River chinook sonar program is the only assessment in Alaska that apportions sonar counts by species using only acoustic data (cf. Fleischman and Burwen 2003). Target strength and range criteria are used to separate the more abundant sockeye from chinook salmon (Miller et al. 2003). Recent studies indicate that a fraction of sockeye salmon are being erroneously classified as chinook salmon, which results in an inflated chinook abundance estimate (Burwen et al. 1998, 2003).

    In the mid-1990’s, results from experiments on the Kenai River using tethered and free-swimming fish identified echo envelope length as a potential species discriminating metric. An echo envelope is the time-dependent intensity of the reflected sound. Echo envelope metrics characterize a target primarily using time delay rather than the amplitude of the returned echo. Burwen and Fleischman (1998) found that the accuracy of distinguishing chinook from sockeye salmon increased when using echo envelope length relative to target strength. This result is promising for species classification but the mechanism influencing echo length is not understood and uncertainty remains why this metric performs better than target strength in riverine applications.

    Experiments conducted in 2002 included a recently developed sonar technology that enables acoustic imaging of fish targets. The DIDSON (Dual frequency IDentification SONar) imaging sonar can be used to examine how echoes are influenced by the size and behavior of fish as they swim through a side-looking acoustic beam. The DIDSON provides near video-quality images for identifying objects underwater (Belcher et al. 2001). During the 2002 field measurements, a splitbeam echosounder was paired with a DIDSON to record echo intensity and fish orientation from 12 tethered chinook and 9 sockeye salmon. A few sockeye salmon serendipitously swam through the beam during tethered fish measurements. Repeated series of measurements were collected from these fish at various ranges (4-17 meters) to assess potential range effects on echo intensities and the measurements used to characterize echo shapes. Ongoing analyses of the data indicate that as fish swim through the beam and are oriented at oblique angles relative to the transducer face echoes are recorded that have complex envelope shapes including multiple peaks. This is the first indication why target strength measurements are highly variable. The duration of an echo from a large target such as a chinook salmon was also observed to be sensitive to the length of the target, potentially due to near simultaneous reflections from several body parts (e.g. head and tail).

    The next logical step in this research is to examine the influence of fish orientation and position in the beam on the number, shape, and intensity of echoes recorded by the splitbeam echosounder. For riverine applications, time-based metrics appear to be superior predictors of fish length and therefore species because they exploit or are robust to factors that compromise amplitude-based metrics such as target strength. It is imperative to understand how sound interacts with and forms echoes from large target that simultaneously reflects sound from multiple body parts. This knowledge will improve precision and accuracy of acoustic-based fish length, species, and abundance estimates in freshwater and marine environments.

    This proposal addresses the Fisheries Theme in Alaska Sea Grant’s (ASG) strategic plan. An investigation into the relationship between fish size and swimming behavior on echo returns directly applies to the goal of “Developing management strategies that balance optimum sustainable yield with conservation of Alaska’s living resources from a coastal watershed ecosystem.” It also meets both objectives under this goal because it seeks to:

    1) conduct biological research on new methodologies to optimize fishery harvests that are sustainable, and

    2) develop collaborative partnerships with NOAA Fisheries and the Alaska Department of Fish and Game to fund relative research.

    To assist in managing its salmon stocks for optimal sustainable yields, ADF&G establishes escapement goals for many of its economically important fish stocks. These escapement goals attempt to produce optimal yields for each stock by ensuring that a sufficient number of fish are guaranteed access to their spawning grounds. To ensure that escapement goals are met, fisheries managers rely heavily on timely and accurate inseason estimates of inriver stock abundance to regulate both commercial and sport interception fisheries. Acoustic technologies will continue as the primary assessment tool used in the management and conservation of some of Alaska’s most economically important salmon resources (e.g. Kenai River chinook salmon). This proposal seeks to improve the information provided by these assessment programs. Improving our ability to apportion acoustic estimates to species, this research will directly aid the ADF&G with its task of optimizing fishery harvests. Because fisheries acoustic research is technically challenging and requires expertise that is limited within the ADF&G, collaborating with University and Industry personnel is an effective way to further the research efforts and needs of department staff.

    Research results will be communicated through: a Master’s student thesis; peer-reviewed publications; presentations at national or international scientific conferences; regional seminars at the ADF&G sportfish and marine divisions; and be integrated within the ADF&G Information and Education and ASG Extension and Education Services Programs.

    Methods

    An important first step in this research program is to identify a suitable candidate for a graduate program for training in Fisheries Acoustics. A previous attempt in 2001 to identify an Alaskan resident with a quantitative background and interest in fisheries research was unsuccessful. It is envisioned that this student will be supported as a National Sea Grant Scholar and enroll at the University of Washington, School of Aquatic and Fishery Sciences under the supervision of Dr. John Horne. ADF&G and Dr. Horne are currently completing a salmon research collaborative project that includes the training of a Masters student (who is also a Hydroacoustic Technology Incorporated (HTI) employee). The student’s thesis is entitled, “Acoustic characterization of chinook and sockeye salmon on the Kenai River.” Features of the echo envelope, the time-dependent intensity of the reflected sound, are being quantified and examined on their ability to distinguish between the two species.

    The addition of a DIDSON imaging sonar extended the breadth of the current project and is will be used during field measurements in the proposal. A 200 kHz splitbeam echosounder was paired with a multibeam, imaging sonar to simultaneously record echo intensity and orientation of tethered fish. The DIDSON unit operates at 1.0 and 1.8 MHz to provide near video quality images. Synchronizing data acquisition between the DIDSON sonar and the splitbeam echosounder showed that data from the two technologies improves species identification, provides additional data on fish behavior, and can be used to increase understanding of fish as acoustic targets. For each split-beam echo, the exact position and orientation of the fish can be determined from the DIDSON image (Fig. 1).

    Figure 1. Schematic diagram showing how a fish (upper left) is perceived by the DIDSON imaging sonar (lower) and the splitbeam echosounder (upper right).

    In the current project, 16 echo metrics were tabulated from individual echoes returned from tethered and free-swimming salmon. Echo metrics, grouped by attribute, include: range (i.e. distance) from the transducer, envelope shape, phase stability (i.e. consistency of position in space), roughness (i.e. geometry and self-similarity), and amplitude (Table 1).

    Table 1. Echo attribute type and metrics used to characterize echoes from chinook and sockeye salmon on the Kenai River.

    If smaller sockeye act as point source scattering targets, echoes are predicted to have constant range and position, envelope widths/shapes similar to the original pulse, and low variability in echo intensity. Larger chinook (relative to the acoustic wavelength), are predicted to exhibit higher variability in all echo metrics. Pairwise comparisons from data collected at 0.2 milliseconds resulted in 12 of the 16 metrics differing between the two species. All range, echo width/shape, and position metrics were significantly different (p

  • SEA GRANT PROJECT SUMMARY

    INSTITUTION: Alaska Sea Grant College Program ICODE: TITLE: ACOUSTIC BEHAVIOR OF SALMON

    PROJECT NUMBER: 2005-33 REVISION DATE: May 13, 2005 PROJECT STATUS: INITIATION DATE: Feb. 2006 COMPLETION DATE: Dec. 2008 SUB PROGRAM: PRINCIPAL INVESTIGATOR: John K. Horne EFFORT: AFFILIATION: University of Washington School of Aquatic and Fishery Sciences AFFILIATION CODE:

    SG FUNDS: $60,236 STATE MATCHING FUNDS: $40,634 LAST YEARS SG FUNDS: $0 LAST YEARS MATCHING FUNDS: $0 PASS-THROUGH FUNDS: $0 LAST YEARS PASS THROUGH FUNDS: $0 RELATED PROJECTS: PARENT PROJECTS: SEA GRANT STRATEGIC PLAN CLASSIFICATION#: 3 Fisheries KEYWORDS: salmon, acoustic assessment, species discrimination, student training

    OBJECTIVES: This program will combine the use of two acoustic technologies to examine the influence of fish behavior on the amplitude and shape of reflected sound from salmon in rivers. Primary research objectives include: 1. Characterizing variability in backscattered echo amplitude and shape 2. Determining the influence of behavior on echo amplitude and shape 3. Quantifying echo width to fish morphometric relationship (e.g. length, width) 4. Examining the potential of using differences in echo characteristics to discriminate Chinook from Sockeye Salmon in acoustic data. METHODOLOGY: A splitbeam echosounder will be synchronized with an imaging sonar to collect acoustic data on tethered and free-swimming fish. Metrics will be used to characterize echo shapes and compared to fish orientation. RATIONALE: Understanding how fish scatter sound improves discrimination of species and the accuracy of acoustic-based assessment. BENEFITS: Results of this project will increase methods to discriminate chinook from sockeye salmon, the understanding of how fish in rivers scatter sound, and the accuracy of acoustic-based escapement assessment on the Kenai River.

  • Proposal Objectives This program will combine the use of two acoustic technologies to examine the influence of

    fish behavior on the intensity and shape of reflected sound from salmon in rivers. Primary research objectives include:

    1. Characterizing variability in backscattered echo amplitude and shape

    2. Determining the influence of behavior on echo amplitude and shape

    3. Quantifying echo width to fish morphometric relationship (e.g. length, width)

    4. Examining the potential of using differences in echo characteristics to discriminate Chinook from Sockeye Salmon in acoustic data.

    This program is also explicitly designed to include training of an Alaskan resident in fisheries acoustics research techniques. Salmon abundance on at least two rivers in Alaska (e.g. Kuskokwim River, Noatak River) is not being assessed using acoustic technologies due to a lack of trained personnel. Alaska’s need for trained fisheries acousticians is great. If an Alaskan student (native or non-native) is trained during this program, it is believed that there is a greater likelihood that the student will return to Alaska and will be an attractive employee for the Alaska Department of Fish and Game (ADF&G), NOAA fisheries, or the fisheries acoustic industry.

    Milestones have been identified for the project. By the end of the first year, the graduate student will have completed two quarters of course work and participated in the first set of acoustic backscatter measurements in conjunction with ADF&G researchers and staff at the Kenai River sampling site. Data analysis will commence directly after field measurements and continue throughout the duration of the project. Outreach activities will be coordinated in part with the summer field season and extend to the end of the year. By the end of the second year, graduate student coursework will be completed, a second field season will have collected additional data, data from the first field season will be analyzed, and the second round of outreach activities will be well underway. By the end of the third year, the student will complete the Master’s program and outreach activities.

    Justification and Need Fixed-location, side-looking acoustic techniques are often the only way to obtain in-season

    abundance estimates for anadromous fish stocks in rivers that are too wide for weir structures and too occluded for visual observations (Daum and Osborne 1998; Osborne and Melegari 2002; Westerman and Willette 2003). Acoustic assessment sites currently exist on 15 rivers in Alaska. One of the primary barriers to wider use of sonar assessment has been the inability to acoustically discriminate among fish sizes and species (cf. Horne 2000).

    Acoustic techniques used to discriminate and classify fish species traditionally rely on the intensity of reflected sound (i.e. target strength, TS) to determine the size and then species of an insonified target. Using this approach in shallow water, riverine environments include additional challenges (Trevorrow et al. 2000). Boundary effects (i.e. water surface and river bottom) may distort echoes and impede detection of individual animals (Mulligan 2000; Gerlotto et al. 2000). Distances to targets are generally short and when combined with narrow beam angles, violate the point source assumption of reflected energy (i.e. backscatter) from targets because fish are large relative to the beam swath (Dawson et al. 2000). Under these conditions, fish become complex backscatter targets and the intensity and phase of echoes can be corrupted. Variability in fish

  • orientation relative to the transducer when the beam is directed across the river also influences intensity and phase of TS measurements (Love 1969; Dahl and Matthisen 1983; Kubecka 1993; Horne 2003). Acoustic signal to noise ratios are generally low in riverine environments which may bias estimates of fish position within the beam (Kieser et al. 2000) and resulting TS (Fleischman and Burwen 2000). The combination of these factors potentially result in variable TS measurements that makes it difficult, if not impossible, to identify fish species using only target strength as the discriminating metric.

    On the Kenai River in southcentral Alaska, chinook salmon Oncorhynchus tshawytscha migrate concurrently with more numerous sockeye salmon Oncorhynchus nerka. The two species differ in size and migratory behavior: sockeye salmon average less than 60 cm in length and migrate primarily in shallow water close to the river bank; chinook salmon often exceed 100 cm and migrate in deeper water near mid-channel. These differences were used as justification to initiate a chinook salmon sonar assessment program in the late 1980s (Eggers et al. 1995). Currently, the Kenai River chinook sonar program is the only assessment in Alaska that apportions sonar counts by species using only acoustic data (cf. Fleischman and Burwen 2003). Target strength and range criteria are used to separate the more abundant sockeye from chinook salmon (Miller et al. 2003). Recent studies indicate that a fraction of sockeye salmon are being erroneously classified as chinook salmon, which results in an inflated chinook abundance estimate (Burwen et al. 1998, 2003).

    In the mid-1990’s, results from experiments on the Kenai River using tethered and free-swimming fish identified echo envelope length as a potential species discriminating metric. An echo envelope is the time-dependent intensity of the reflected sound. Echo envelope metrics characterize a target primarily using time delay rather than the amplitude of the returned echo. Burwen and Fleischman (1998) found that the accuracy of distinguishing chinook from sockeye salmon increased when using echo envelope length relative to target strength. This result is promising for species classification but the mechanism influencing echo length is not understood and uncertainty remains why this metric performs better than target strength in riverine applications.

    Experiments conducted in 2002 included a recently developed sonar technology that enables acoustic imaging of fish targets. The DIDSON (Dual frequency IDentification SONar) imaging sonar can be used to examine how echoes are influenced by the size and behavior of fish as they swim through a side-looking acoustic beam. The DIDSON provides near video-quality images for identifying objects underwater (Belcher et al. 2001). During the 2002 field measurements, a splitbeam echosounder was paired with a DIDSON to record echo intensity and fish orientation from 12 tethered chinook and 9 sockeye salmon. A few sockeye salmon serendipitously swam through the beam during tethered fish measurements. Repeated series of measurements were collected from these fish at various ranges (4-17 meters) to assess potential range effects on echo intensities and the measurements used to characterize echo shapes. Ongoing analyses of the data indicate that as fish swim through the beam and are oriented at oblique angles relative to the transducer face echoes are recorded that have complex envelope shapes including multiple peaks. This is the first indication why target strength measurements are highly variable. The duration of an echo from a large target such as a chinook salmon was also observed to be sensitive to the length of the target, potentially due to near simultaneous reflections from several body parts (e.g. head and tail).

  • The next logical step in this research is to examine the influence of fish orientation and position in the beam on the number, shape, and intensity of echoes recorded by the splitbeam echosounder. For riverine applications, time-based metrics appear to be superior predictors of fish length and therefore species because they exploit or are robust to factors that compromise amplitude-based metrics such as target strength. It is imperative to understand how sound interacts with and forms echoes from large target that simultaneously reflects sound from multiple body parts. This knowledge will improve precision and accuracy of acoustic-based fish length, species, and abundance estimates in freshwater and marine environments.

    This proposal addresses the Fisheries Theme in Alaska Sea Grant’s (ASG) strategic plan. An investigation into the relationship between fish size and swimming behavior on echo returns directly applies to the goal of “Developing management strategies that balance optimum sustainable yield with conservation of Alaska’s living resources from a coastal watershed ecosystem.” It also meets both objectives under this goal because it seeks to:

    1) conduct biological research on new methodologies to optimize fishery harvests that are

    sustainable, and 2) develop collaborative partnerships with NOAA Fisheries and the Alaska Department of Fish

    and Game to fund relative research.

    To assist in managing its salmon stocks for optimal sustainable yields, ADF&G establishes escapement goals for many of its economically important fish stocks. These escapement goals attempt to produce optimal yields for each stock by ensuring that a sufficient number of fish are guaranteed access to their spawning grounds. To ensure that escapement goals are met, fisheries managers rely heavily on timely and accurate inseason estimates of inriver stock abundance to regulate both commercial and sport interception fisheries. Acoustic technologies will continue as the primary assessment tool used in the management and conservation of some of Alaska’s most economically important salmon resources (e.g. Kenai River chinook salmon). This proposal seeks to improve the information provided by these assessment programs. Improving our ability to apportion acoustic estimates to species, this research will directly aid the ADF&G with its task of optimizing fishery harvests. Because fisheries acoustic research is technically challenging and requires expertise that is limited within the ADF&G, collaborating with University and Industry personnel is an effective way to further the research efforts and needs of department staff.

    Research results will be communicated through: a Master’s student thesis; peer-reviewed publications; presentations at national or international scientific conferences; regional seminars at the ADF&G sportfish and marine divisions; and be integrated within the ADF&G Information and Education and ASG Extension and Education Services Programs.

    Methods

    An important first step in this research program is to identify a suitable candidate for a graduate program for training in Fisheries Acoustics. A previous attempt in 2001 to identify an Alaskan resident with a quantitative background and interest in fisheries research was unsuccessful. It is envisioned that this student will be supported as a National Sea Grant Scholar and enroll at the University of Washington, School of Aquatic and Fishery Sciences under the supervision of Dr. John Horne. ADF&G and Dr. Horne are currently completing a salmon

  • research collaborative project that includes the training of a Masters student (who is also a Hydroacoustic Technology Incorporated (HTI) employee). The student’s thesis is entitled, “Acoustic characterization of chinook and sockeye salmon on the Kenai River.” Features of the echo envelope, the time-dependent intensity of the reflected sound, are being quantified and examined on their ability to distinguish between the two species.

    The addition of a DIDSON imaging sonar extended the breadth of the current project and is will be used during field measurements in the proposal. A 200 kHz splitbeam echosounder was paired with a multibeam, imaging sonar to simultaneously record echo intensity and orientation of tethered fish. The DIDSON unit operates at 1.0 and 1.8 MHz to provide near video quality images. Synchronizing data acquisition between the DIDSON sonar and the splitbeam echosounder showed that data from the two technologies improves species identification, provides additional data on fish behavior, and can be used to increase understanding of fish as acoustic targets. For each split-beam echo, the exact position and orientation of the fish can be determined from the DIDSON image (Fig. 1).

    Figure 1. Schematic diagram showing how a fish (upper left) is perceived by the DIDSON imaging sonar (lower) and the splitbeam echosounder (upper right).

    In the current project, 16 echo metrics were tabulated from individual echoes returned from tethered and free-swimming salmon. Echo metrics, grouped by attribute, include: range (i.e. distance) from the transducer, envelope shape, phase stability (i.e. consistency of position in space), roughness (i.e. geometry and self-similarity), and amplitude (Table 1).

  • Table 1. Echo attribute type and metrics used to characterize echoes from chinook and sockeye salmon on the Kenai River.

    If smaller sockeye act as point source scattering targets, echoes are predicted to have

    constant range and position, envelope widths/shapes similar to the original pulse, and low variability in echo intensity. Larger chinook (relative to the acoustic wavelength), are predicted to exhibit higher variability in all echo metrics. Pairwise comparisons from data collected at 0.2 milliseconds resulted in 12 of the 16 metrics differing between the two species. All range, echo width/shape, and position metrics were significantly different (p

  • range) echo intensities from known tethered and free-swimming fish. Digitized echo intensity data from the echosounder will be quantified using echo shape metrics and compared to echo intensities and fish orientations from sonar data images. Echosounder and sonar comparisons will be used to quantify the number, magnitude, and variability of echoes as a function of fish width, length, and orientation relative to the transducer face.

    Outreach Component From the onset, student, scientific, and public outreach will form integral parts of this

    research program. We are interested in initiating a recruitment program with Alaska Sea Grant (ASG) to identify interested, qualified Alaskan residents as candidates for graduate student programs in aquatic science. We believe that the probability of a student returning to Alaska is higher if that student is an Alaskan resident. We feel that ASG is the best administrative body to identify and recruit interested students who could apply to graduate school. This joint initiative is potentially the first step in increasing participation of Alaskans, including natives and women, in advanced technical and academic training. Successful completion of this program will result in fisheries acoustics expertise to be transferred directly to the State of Alaska through student training and collaboration with ADF&G scientists. Assuming that the student returns to Alaska, he or she will then be available to ADF&G, NOAA fisheries, or the acoustics industry as a potential employee for a growing applied science field.

    A comprehensive outreach program has been developed to translate and disseminate findings of this project to scientific and public audiences (Table 2). The student will work directly with extension and education specialists in ADF&G and ASG. The ADF&G outreach plan consists of two goals: to communicate research efforts to stakeholders in the community, and to communicate research efforts to scientists and practitioners involved in fisheries acoustics.

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    utco

    me/

    Eva

    luat

    ion

    #1: B

    ette

    r co

    mpl

    ianc

    e at

    so

    nar s

    ite w

    ith

    resp

    ect t

    o av

    oidi

    ng so

    nar

    gear

    and

    m

    inim

    izin

    g bo

    at a

    ctiv

    ity a

    t si

    te

    Spor

    t fis

    hing

    gu

    ides

    , spo

    rt fis

    hers

    , ne

    ighb

    orin

    g co

    mm

    unity

    (n

    earb

    y ho

    use

    owne

    rs)

    Mor

    e ac

    cura

    te

    esca

    pem

    ent d

    ata

    from

    th

    e so

    nar t

    rans

    late

    s to

    bette

    r man

    aged

    fis

    herie

    s and

    max

    imum

    op

    portu

    nity

    for u

    ser

    grou

    ps

    Web

    pag

    es; s

    igns

    ; br

    ochu

    res;

    pre

    sent

    atio

    n at

    loca

    l sta

    keho

    lder

    m

    eetin

    gs: K

    enai

    Riv

    er

    Gui

    de A

    ssoc

    iatio

    n,

    Ken

    ai R

    iver

    Spo

    rtfis

    hing

    A

    ssoc

    iatio

    n, to

    urs a

    t so

    nar s

    ite

    links

    on

    exis

    ting

    agen

    cy w

    eb si

    tes;

    Lo

    cal A

    DF&

    G

    offic

    e (b

    roch

    ures

    ) K

    enai

    Riv

    er G

    uide

    A

    ssn.

    , Ken

    ai R

    iver

    Sp

    ortfi

    shin

    g A

    ssoc

    iatio

    n

    Few

    er n

    egat

    ive

    inte

    ract

    ions

    at s

    onar

    si

    te (w

    here

    spor

    t fis

    hing

    act

    ivity

    is

    rest

    ricte

    d by

    rese

    arch

    ef

    forts

    and

    som

    etim

    es

    rese

    nted

    )

    #2:

    Enco

    urag

    e hi

    gh sc

    hool

    st

    uden

    ts a

    nd

    com

    mun

    ity

    colle

    ge st

    uden

    ts

    to c

    onsi

    der

    wor

    king

    for

    AD

    F&G

    in

    hom

    e to

    wn

    Hig

    h sc

    hool

    and

    co

    mm

    unity

    co

    llege

    stud

    ents

    an

    d ed

    ucat

    ors

    If y

    ou e

    njoy

    wor

    king

    w

    ith c

    ompu

    ters

    , and

    m

    ath,

    fish

    , and

    wor

    king

    ou

    tdoo

    rs, c

    onsi

    der a

    jo

    b at

    AD

    F&G

    in o

    ne

    of th

    e so

    nar p

    rogr

    ams –

    w

    e ne

    ed e

    mpl

    oyee

    s th

    at a

    re b

    oth

    tech

    nica

    l an

    d en

    joy

    outd

    oor

    wor

    k

    Pres

    enta

    tions

    in

    clas

    sroo

    ms,

    orga

    nize

    d to

    urs a

    t son

    ar si

    tes,

    post

    er o

    r vid

    eos a

    t es

    tabl

    ishe

    d di

    visi

    onal

    ed

    ucat

    ion

    even

    ts su

    ch a

    s sa

    lmon

    cel

    ebra

    tions

    Salm

    onid

    s in

    the

    Cla

    ssro

    om

    prog

    ram

    , sci

    ence

    fa

    irs, M

    obile

    A

    quat

    ic E

    duca

    tion

    Cla

    ssro

    om, c

    aree

    r fa

    irs; K

    ache

    mak

    B

    ay R

    esea

    rch

    Res

    erve

    Incr

    ease

    d ap

    plic

    ant

    pool

    for p

    ositi

    ons o

    n lo

    cal A

    DF&

    G so

    nar

    asse

    ssm

    ent p

    roje

    cts,

    num

    ber o

    f ret

    urn

    post

    card

    s ask

    ing

    for

    mor

    e in

    form

    atio

    n

  • Obj

    ectiv

    e T

    arge

    t aud

    ienc

    eM

    essa

    ge

    Pack

    ages

    D

    istr

    ibut

    ion

    Cha

    nnel

    s O

    utco

    me/

    Eva

    luat

    ion

    #3: I

    ntro

    duce

    re

    sear

    ch

    fund

    ing

    oppo

    rtuni

    ties t

    o ot

    her a

    genc

    ies

    that

    are

    in

    tere

    sted

    or

    have

    bee

    n re

    cept

    ive

    in th

    e pa

    st

    Ken

    ai R

    iver

    Sp

    orts

    fishi

    ng

    Ass

    ocia

    tion

    Opp

    ortu

    nity

    to fu

    nd

    rese

    arch

    that

    impr

    oves

    pu

    blic

    per

    cept

    ion

    of

    agen

    cy

    Pres

    enta

    tion

    of re

    sear

    ch

    effo

    rts a

    t app

    ropr

    iate

    m

    eetin

    gs

    Ken

    ai R

    iver

    Sp

    orts

    fishi

    ng

    Ass

    ocia

    tion

    mon

    thly

    mee

    tings

    , pr

    esen

    tatio

    n to

    B

    oard

    of D

    irect

    ors

    Incr

    ease

    d pa

    rtner

    ship

    w

    ith c

    omm

    unity

    th

    roug

    h co

    llabo

    rativ

    e ef

    forts

    and

    fund

    ing.

    Th

    is o

    rgan

    izat

    ion

    fund

    ed th

    e fir

    st

    DID

    SON

    stud

    y

  • GO

    AL

    2: C

    omm

    unic

    ate

    rese

    arch

    eff

    orts

    to sc

    ient

    ists

    and

    pra

    ctiti

    oner

    s inv

    olve

    d in

    fish

    erie

    s aco

    ustic

    s O

    bjec

    tive

    Tar

    get a

    udie

    nce

    Mes

    sage

    Pa

    ckag

    es

    Dis

    trib

    utio

    n C

    hann

    els

    Out

    com

    e\E

    valu

    atio

    n

    #1: I

    ntro

    duce

    ne

    w te

    chni

    ques

    fo

    r ana

    lyzi

    ng

    and

    inte

    rpre

    ting

    fishe

    ries

    acou

    stic

    dat

    a (c

    lass

    ifyin

    g ac

    oust

    ic ta

    rget

    s to

    spec

    ies)

    Scie

    ntis

    ts, p

    eers

    at

    AD

    F&G

    , ot

    her f

    ishe

    ries

    sona

    r pr

    actit

    ione

    rs

    Mor

    e ac

    cura

    te e

    scap

    emen

    t da

    ta fr

    om fi

    sher

    ies a

    cous

    tic

    asse

    ssm

    ent p

    rogr

    ams

    Pres

    enta

    tion

    of

    rese

    arch

    eff

    orts

    at

    app

    ropr

    iate

    sc

    ient

    ific

    mee

    tings

    Aco

    ustic

    al S

    ocie

    ty

    of A

    mer

    ica

    mee

    tings

    , Am

    eric

    an

    Fish

    erie

    s Soc

    iety

    m

    eetin

    gs (l

    ocal

    and

    na

    tiona

    l), IC

    ES

    Aco

    ustic

    s in

    Fish

    erie

    s and

    A

    quat

    ic

    Com

    mun

    ities

    m

    eetin

    g, IC

    ES

    WG

    FAST

    mee

    tings

    Peer

    revi

    ew o

    f res

    earc

    h re

    sults

    , acc

    epta

    nce

    of n

    ew

    tech

    niqu

    es fo

    r cla

    ssify

    ing

    fish

    spec

    ies b

    y br

    oade

    r sc

    ient

    ific

    com

    mun

    ity a

    nd

    thos

    e in

    volv

    ed w

    ith

    asse

    ssm

    ent p

    rogr

    ams,

    impr

    oved

    stan

    dard

    izat

    ion

    of m

    etho

    dolo

    gy fo

    r co

    llect

    ing,

    pro

    cess

    ing,

    an

    alyz

    ing

    acou

    stic

    dat

    a

    #2: I

    ntro

    duce

    re

    sear

    ch

    fund

    ing

    oppo

    rtuni

    ties t

    o ot

    her a

    genc

    ies

    that

    are

    in

    tere

    sted

    or

    have

    bee

    n re

    cept

    ive

    in th

    e pa

    st

    Ken

    ai R

    iver

    Sp

    orts

    fishi

    ng

    Ass

    ocia

    tion

    Opp

    ortu

    nity

    to fu

    nd

    prog

    ress

    ive

    rese

    arch

    that

    im

    prov

    es p

    ublic

    per

    cept

    ion

    of a

    genc

    y

    Pres

    enta

    tion

    of

    rese

    arch

    eff

    orts

    at

    app

    ropr

    iate

    m

    eetin

    gs

    Ken

    ai R

    iver

    Sp

    orts

    fishi

    ng

    Ass

    ocia

    tion

    mon

    thly

    m

    eetin

    gs,

    pres

    enta

    tion

    to

    Boa

    rd o

    f Dire

    ctor

    s

    Pote

    ntia

    l for

    add

    ition

    al

    fund

    ing

    from

    the

    Ken

    ai

    Riv

    er S

    portf

    ishi

    ng

    Ass

    ocia

    tion.

    Thi

    s or

    gani

    zatio

    n fu

    nded

    the

    first

    DID

    SON

    stud

    y

  • Ava

    ilabl

    e R

    esou

    rces

    D

    r. Jo

    hn H

    orne

    has

    bee

    n us

    ing

    acou

    stic

    s as a

    rese

    arch

    tool

    and

    exa

    min

    ing

    how

    aqu

    atic

    or

    gani

    sms r

    efle

    ct so

    und

    sinc

    e 19

    85.

    He

    has t

    augh

    t fis

    herie

    s aco

    ustic

    cou

    rses

    at t

    he

    unde

    rgra

    duat

    e an

    d gr

    adua

    te le

    vels

    , pub

    lishe

    d 24

    pee

    r-re

    view

    ed sc

    ient

    ific

    pape

    rs a

    nd

    pres

    ente

    d 70

    ora

    l pap

    ers t

    hat u

    se o

    r inv

    estig

    ate

    acou

    stic

    tech

    nolo

    gies

    in a

    quat

    ic e

    cosy

    stem

    s.

    Dr.

    Hor

    ne c

    urre

    ntly

    hea

    ds th

    e Fi

    sher

    ies A

    cous

    tics R

    esea

    rch

    Labo

    rato

    ry a

    t the

    Uni

    vers

    ity o

    f W

    ashi

    ngto

    n an

    d is

    aff

    iliat

    ed w

    ith th

    e ac

    oust

    ic a

    sses

    smen

    t gro

    up a

    t the

    NO

    AA

    Ala

    ska

    Fish

    erie

    s Sci

    ence

    Cen

    ter.

    Dr.

    Hor

    ne w

    ill h

    elp

    desi

    gn a

    nd c

    oord

    inat

    e fie

    ld m

    easu

    rem

    ents

    , su

    perv

    ise

    the

    grad

    uate

    stud

    ent,

    anal

    yze

    data

    , and

    co-

    auth

    or a

    man

    usc

    help

    coo

    rdin

    ate

    Deb

    by B

    urw

    en is

    a re

    sear

    ch B

    iolo

    gist

    with

    the

    Ala

    ska

    Dep

    artm

    ent o

    f Fis

    h an

    d G

    ame

    and

    has s

    peci

    aliz

    ed in

    impl

    emen

    ting

    and

    supe

    rvis

    ing

    fishe

    ries a

    cous

    tic a

    sses

    smen

    t pro

    gram

    s si

    nce

    1986

    . Si

    nce

    1995

    , her

    rese

    arch

    has

    prim

    arily

    focu

    sed

    on sp

    ecie

    s cla

    ssifi

    catio

    n us

    ing

    acou

    stic

    info

    rmat

    ion.

    She

    has

    pub

    lishe

    d se

    vera

    l pee

    r-re

    view

    ed sc

    ient

    ific

    pape

    rs a

    nd

    pres

    ente

    d or

    al p

    aper

    s at a

    num

    ber o

    f nat

    iona

    l mee

    tings

    rela

    ted

    to th

    is re

    sear

    ch.

    Reg

    iona

    l In

    form

    atio

    n Se

    rvic

    es w

    ithin

    AD

    F&G

    Spo

    rtfis

    h di

    visi

    on w

    ill w

    ork

    dire

    ctly

    with

    the

    grad

    uate

    st

    uden

    t on

    all o

    utre

    ach

    com

    pone

    nts o

    f the

    pro

    ject

    .

    Patri

    ck N

    eals

    on h

    as b

    een

    wor

    king

    in th

    e fis

    herie

    s aco

    ustic

    s ind

    ustry

    sinc

    e 19

    82 a

    nd

    curr

    ently

    dire

    cts t

    he c

    onsu

    lting

    rese

    arch

    div

    isio

    n at

    Hyd

    roac

    oust

    ic T

    echn

    olog

    y, In

    corp

    orat

    ed

    (HTI

    ). H

    is fi

    eld

    expe

    rienc

    e in

    clud

    es o

    ver 2

    00 st

    udie

    s qua

    ntify

    ing

    fish

    dist

    ribut

    ions

    at d

    ams,

    lake

    s, riv

    ers,

    and

    the

    mar

    ine

    envi

    ronm

    ent i

    n N

    orth

    Am

    eric

    a, S

    outh

    Am

    eric

    a, E

    urop

    e, a

    nd

    Scan

    dina

    via.

    His

    cur

    rent

    rese

    arch

    exa

    min

    es ta

    rget

    iden

    tific

    atio

    n ba

    sed

    on a

    cous

    tic e

    cho

    enve

    lope

    info

    rmat

    ion.

    He

    has t

    augh

    t fis

    herie

    s aco

    ustic

    cou

    rses

    in th

    e in

    dust

    ry si

    nce

    1985

    an

    d as

    sist

    ed in

    gra

    duat

    e-le

    vel c

    ours

    es a

    t the

    Uni

    vers

    ity o

    f Was

    hing

    ton.

    HTI

    will

    pro

    vide

    st

    aff t

    ime

    from

    Pat

    rick

    Nea

    slon

    and

    a sp

    litbe

    am e

    chos

    ound

    er to

    supp

    ort t

    his p

    roje

    ct.

    Dr.

    Ed B

    elch

    er, f

    ound

    er o

    f Sou

    nd M

    etric

    s Cor

    pora

    tion,

    will

    supp

    ly a

    nd su

    ppor

    t a D

    ual

    Freq

    uenc

    y Id

    entif

    icat

    ion

    Sona

    r (D

    IDSO

    N) t

    o be

    use

    d at

    the

    Ken

    ai R

    iver

    fiel

    d si

    te.

    The

    field

    site

    at K

    enai

    Riv

    er, s

    taff

    supp

    ort t

    o su

    pply

    and

    man

    age

    fish,

    aco

    ustic

    eq

    uipm

    ent,

    and

    proc

    essi

    ng so

    ftwar

    e ha

    s bee

    n id

    entif

    ied

    for t

    his p

    roje

    ct.

    The

    AD

    F&G

    , HTI

    , an

    d th

    e U

    W w

    ill jo

    intly

    par

    ticip

    ate

    in th

    is p

    roje

    ct.

    The

    Nat

    iona

    l Sea

    Gra

    nt S

    chol

    ar w

    ill b

    e en

    rolle

    d in

    a M

    aste

    rs p

    rogr

    am a

    t the

    Uni

    vers

    ity o

    f Was

    hing

    ton,

    Sch

    ool o

    f Aqu

    atic

    and

    Fi

    sher

    y Sc

    ienc

    es.

  • Seve

    ral k

    ey p

    artn

    ersh

    ips w

    ithin

    the

    Ken

    ai R

    iver

    use

    r com

    mun

    ity w

    ill a

    lso

    parti

    cipa

    te a

    nd

    cont

    ribut

    e to

    the

    prog

    ram

    . A

    s out

    lined

    in th

    e ou

    treac

    h pr

    ogra

    m ta

    bles

    , the

    Ken

    ai R

    iver

    Sp

    orts

    fishi

    ng A

    ssoc

    iatio

    n an

    d th

    e K

    enai

    Riv

    er G

    uide

    Ass

    ocia

    tion

    will

    rece

    ive

    regu

    lar

    upda

    tes o

    n pr

    ogre

    ss fr

    om th

    e pr

    ojec

    t. H

    igh

    scho

    ol a

    nd c

    omm

    unity

    col

    lege

    edu

    cato

    r and

    st

    uden

    t pre

    sent

    atio

    ns a

    re a

    lso

    plan

    ned

    for t

    he S

    alm

    onid

    s in

    the

    Cla

    ssro

    om p

    rogr

    am, s

    cien

    ce

    fairs

    , Mob

    ile A

    quat

    ic E

    duca

    tion

    Cla

    ssro

    om, c

    aree

    r fai

    rs, a

    nd th

    e K

    ache

    mak

    Bay

    Res

    earc

    h R

    eser

    ve

    Res

    ults

    from

    Pre

    viou

    s Sea

    Gra

    nt S

    uppo

    rt

    Co-

    PI’s

    in th

    is p

    ropo

    sal h

    ave

    not r

    ecei

    ved

    prev

    ious

    fund

    ing

    from

    Ala

    ska

    Sea

    Gra

    nt.

  • Bud

    get J

    ustif

    icat

    ion

    Per

    sonn

    el

    Fund

    s are

    requ

    este

    d to

    supp

    ort J

    ohn

    Hor

    ne fo

    r one

    mon

    th p

    er y

    ear.

    Dr.

    Hor

    ne w

    ill h

    elp

    desi

    gn fi

    eld

    sam

    plin

    g m

    easu

    rem

    ents

    , sup

    ervi

    se th

    e gr

    adua

    te st

    uden

    t, an

    d co

    -aut

    hor a

    sc

    ient

    ific

    man

    uscr

    ipt.

    Sup

    port

    for a

    Mas

    ters

    stud

    ent i

    s es

    sent

    ial t

    o th

    e pr

    ojec

    t but

    fund

    s to

    supp

    ort t

    he st

    uden

    t are

    not

    incl

    uded

    in th

    is b

    udge

    t req

    uest

    .. W

    e an

    ticip

    ate

    that

    fund

    s to

    supp

    ort t

    he st

    uden

    t will

    be

    prov

    ided

    by

    the

    Nat

    iona

    l Sea

    Gra

    nt S

    chol

    ars P

    rogr

    am.

    Sala

    ry

    cost

    s for

    the

    stud

    ent a

    re p

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    Bur

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    smen

    t te

    chni

    ques

    for c

    hino

    ok sa

    lmon

    on

    the

    Ken

    ai R

    iver

    , 199

    5. A

    lask

    a D

    epar

    tmen

    t of F

    ish

    and

    Gam

    e, F

    ishe

    ry D

    ata

    Serie

    s No.

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    Bur

    wen

    , D.L

    ., S.

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    eisc

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    , J.D

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    er, a

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    .E. J

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    Dah

    l, P.

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  • Daw

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    , D. W

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    ., D

    egan

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    eige

    r, D

    . Har

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    Res

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    81.

    Kub

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    , J.,

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    . Sim

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    J. A

    pplie

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  • John K. Horne School of Aquatic and Fishery Sciences University of Washington Box 355020 Seattle, WA 98115-0070

    Phone: (206) 221-6890 Fax: (206) 221-6939 E-mail: [email protected]

    Education 1995 Ph.D. Memorial University of Newfoundland, Fisheries Ecology 1988 M.Sc. Dalhousie University, Fisheries Ecology 1985 B.Sc. (Honours) Dalhousie University, Marine Biology

    Professional Appointments 2004- Research Associate Professor – School of Aquatic and Fishery Sciences, University

    of Washington. Affiliated with the Quantitative Ecology and Resource Management Program, University of Washington.

    2001-2004 Research Assistant Professor – University of Washington, School of Aquatic and Fishery Sciences. Affiliated with the Quantitative Ecology and Resource Management Program.

    1999-2000 Research Scientist – Joint Institute for the Study of the Atmosphere and Ocean, University of Washington.

    1997-1999 Research Scientist - NOAA Great Lakes Environmental Research Laboratory. Adjunct Assistant Professor - School of Natural Resources and Environment and College of Engineering, University of Michigan.

    1995-1997 Postdoctoral Fellow - Great Lakes Center. Adjunct Assistant Professor - Department of Biology. State University of New York College at Buffalo State.

    Relevant Publications Horne, J.K. and J.M. Jech. 2005. Models, measures, and visualizations of fish backscatter. In H.

    Medwin [ed.]. Sounds in the Seas: Introduction to Acoustical Oceanography. Academic, New York (in press).

    Gauthier, S. and J.K. Horne. 2004. Potential acoustic discrimination of boreal fish assemblages. ICES Journal of Marine Science 61: 836-845.

    Hazen, E.L. and J.K. Horne. 2004. Comparing modeled and measured target strength variability of walleye pollock, Theragra chalcogramma. ICES Journal of Marine Science 61: 363-377.

    Horne, J.K. 2003. Influence of ontogeny, physiology, and behaviour on target strength of Walleye pollock (Theragra chalcogramma). ICES Journal of Marine Science 60: 1063-1074.

    Towler, R.L., J.M. Jech, and J.K. Horne. 2003. Visualizing fish movement, behaviour, and acoustic backscatter. Aquatic Living Resources 16: 277-282.

    Other Related Publications

    Clay, C.S. and J.K. Horne. 1994. Acoustic models of fish: the Atlantic cod (Gadus morhua). The Journal of the Acoustical Society of America 96: 1661-1668.

    Horne, J.K. 2000. Acoustic approaches to remote species identification: a review. Fisheries Oceanography 9: 356-371.

  • Horne, J.K. and C.S. Clay. 1998. Sonar systems and aquatic organisms: matching equipment and model parameters. Canadian Journal of Fisheries and Aquatic Sciences 55: 1296-1306.

    Jech, J.M. and J.K. Horne. 2001. Effects of in situ target spatial distributions on acoustic density estimates. ICES Journal of marine Science 58: 123-136.

    Gauthier, S. and J.K. Horne. 2004. Potential acoustic discrimination of boreal fish assemblages. ICES Journal of Marine Science 61: 836-845.

    Synergistic Activities Coordinator of the NOAA Alaska Fisheries Science Center and University of Washington,

    School of Aquatic and Fishery Sciences Undergraduate Summer Intern Program. Developer of web-based simulcast of Fisheries Acoustics course lecture content. University of Washington’s research committee member to the North Pacific Universities

    Marine Mammal Consortium. Co-coordinator of University of Washington and University of Alaska multicast of Acoustics

    Seminar course using Internet II.

    Collaborators & Affiliations Whitlow L. Au University of Hawaii John K.B. Ford Department of Fisheries and Oceans, Canada Stephane Gauthier University de Montreal Sarah Hinckley NOAA Alaska Fisheries Science Center J. Michael Jech NOAA Northeast Fisheries Science Center Rudy J. Kloser CSIRO, Australia Richard Towler University of Washington Paul D. Walline NOAA Alaska Fisheries Science Center

    Graduate and Postdoc Advisors Stephen B. Brandt NOAA Great Lakes Environmental Research Laboratory David C. Schneider Memorial University of Newfoundland Steven E. Campana Department of Fisheries and Oceans, Canada

    Thesis Advisor (total: 11) and Postgraduate-Scholar Sponsor (total: 3) Current Students/PostDocs Carlos Alvarez Alaska Fisheries Science Center Steve Barbeaux University of Washington Julian Burgos University of Washington Mark Henderson University of Washington Patrick Nealson University of Washington Carolina Parada Alaska Fisheries Science Center Sandra Parker-Stetter University of Washington

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