Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492...

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Scaled Hypersphere Search Method for Mapping All Reaction Pathways on Potential Energy Surface Development of a New Algorithm Koichi Ohno Graduate School of Science, Tohoku University, JAPAN

Transcript of Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492...

Page 1: Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492 Christpher Columbus 1498 Vasco daGama 1497 Sebastien Gabbot 1499 Amerigo Vespucci 1519

Scaled Hypersphere Search Method for Mapping All Reaction Pathways

on Potential Energy Surface

Development of a New Algorithm

Koichi Ohno

Graduate School of Science, Tohoku University, JAPAN

Page 2: Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492 Christpher Columbus 1498 Vasco daGama 1497 Sebastien Gabbot 1499 Amerigo Vespucci 1519

This is Ptolemaios’s map, in whichJAPANJAPAN and AMERICAAMERICA are missing!

Page 3: Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492 Christpher Columbus 1498 Vasco daGama 1497 Sebastien Gabbot 1499 Amerigo Vespucci 1519

Discovery of New RoutesDiscovery of New Routes

1492 Christpher Columbus1498 Vasco da Gama1497 Sebastien Gabbot1499 Amerigo Vespucci1519 Ferdinand Magellan

To know the World entirely,To know the World entirely,

Global MappingGlobal Mapping is necessary.is necessary.

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To know the World of To know the World of Stereo DynamicsStereo Dynamics in detail,in detail,Global Mapping of Global Mapping of Potential Energy Surfaces Potential Energy Surfaces (PES)

is important.is important.

EQEQ

EQEQ

EQEQ

TSTS

TSTS

TSTSIRCIRC

IRCIRC

IRCIRC

•Minima:

Equilibrium Structures (EQEQ)

•Saddle points: Transition States (TSTS)

•Valleys: Intrinsic Reaction Coordinates(IRCIRC)

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Algorithms for PES Mapping• EQ: Geometry Optimization

ProblemProblem Depend on the initial guess!

• TS: SEAM :Jensen (1992)αBB : Floudas et al. (1992)Eigen Vector Following (EVF) : Cerjan & Miller (1981)Gradient Extremal (GE) : Sun & Ruedenberg (1993) Sphere Optimization (SO) : Abashkin & Russo (1994)Nudged Elastic Band (NEB) :Jonsson et al. (1998)ProblemProblem Partially possible, but generally impossible!

• IRC: Downhill walks are possible by Steepest Descent Method.

ProblemProblem Uphill walks are impossible!

A Method for Uphill walks should be A Method for Uphill walks should be dvelopeddveloped!!

EQEQ

EQEQ

EQEQ

TSTSTSTS

TSTS IRCIRCIRCIRC

IRCIRC

可可 困難困難

Page 6: Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492 Christpher Columbus 1498 Vasco daGama 1497 Sebastien Gabbot 1499 Amerigo Vespucci 1519

Start from an EQ

Find all reaction routes

DissociationDissociation(DC)(DC)

Transition Transition State State ((TSTS))

DissociationDissociation(DC)(DC)

EquilibriumEquilibriumStructureStructure(EQ(EQ))

Uphill walkUphill walk

Downhill walkDownhill walk

When Uphill walks become possible,When Uphill walks become possible,Complete Reaction Route Mapping Complete Reaction Route Mapping also become possiblealso become possible !!

EQEQ

TSTS

TS

EQEQ

EQEQ

EQEQ

EQEQ

EQEQ

TS

TS

TS

TS

One after another algorithm!One after another algorithm!

Page 7: Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492 Christpher Columbus 1498 Vasco daGama 1497 Sebastien Gabbot 1499 Amerigo Vespucci 1519

How to find How to find the entrance to a reaction route?the entrance to a reaction route?

IDEAIDEA : Among all Directions surrounding an EQ Point, Search a Direction with the MaximumSearch a Direction with the Maximum Downward Distortion!Downward Distortion!

EQEQ

TSTSTSTS

EQEQ

TSTS

DCDC

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Application to a model potential (1)Cerjan Cerjan -- MillerMiller Potential : Potential : J.Chem.Phys.J.Chem.Phys. 75, 2745 (1981).75, 2745 (1981).

1 This Work (1 This Work (SHSSHS))

22 SO Method:SO Method:

Avashkin &Russo (1994)Avashkin &Russo (1994)

3, 4 EVF Method: 3, 4 EVF Method:

Banergee et al. (1983) Banergee et al. (1983)

TSTS IRCIRCIRCIRC TSTSEQEQ

Scaled Hypersphere SearchScaled Hypersphere Search

Earlier Methods tend to followlower parts along soft modes.

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Application to a model potential (2)MMüüllerller -- BrownBrown Potential : Potential : Theoret.Chim.ActaTheoret.Chim.Acta 53, 75 (1979).53, 75 (1979).

Gradient Extremal MethodGradient Extremal Method∞∞

EQEQ

EQEQ

EQEQ

TSTS

TSTS

IRCIRC

IRCIRC

IRCIRC

Soft mode PathSoft mode Path

Page 10: Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492 Christpher Columbus 1498 Vasco daGama 1497 Sebastien Gabbot 1499 Amerigo Vespucci 1519

How to Find the Downward Distortion?

Scaled Hypersphere Search (SHS) MethodK. Ohno and S. Maeda, Chem.Phys.Lett. 384 (2004) 277

Scaled Normal Coordinate : qi=λi1/2 Qi

If the PES is harmonic, then the energy on the hypersphere becomes constant!

Thus, Downward Distortions on the real potential surface can easily be made by a simple search of minima on the a simple search of minima on the hyperspherehypersphere!!

An efficient search becomes possible without tryAn efficient search becomes possible without try--andand--errors. errors. A complete search becomes possible because of the use of A complete search becomes possible because of the use of a closed surface.a closed surface..

Page 11: Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492 Christpher Columbus 1498 Vasco daGama 1497 Sebastien Gabbot 1499 Amerigo Vespucci 1519

Application to a model potential (2)

This work This work ((SHSSHS))Scaled Hypersphere SearchScaled Hypersphere Search

MMüüllerller -- BrownBrown Potential : Potential : Theoret.Chim.ActaTheoret.Chim.Acta 53, 75 (1979).53, 75 (1979).

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Global Search for HCHO System

EQ1 (C2v )E = 0.0 kcal/mol

EQ2 (Cs)E = 55.7 kcal/mol

EQ4 (C2v)E = 168.7 kcal/mol

EQ3 (Cs)E = 60.6 kcal/mol

TS2 (Cs)E = 90.0 kcal/mol

TS1 (Cs)E = 86.4 kcal/mol

TS3 (C1)E = 87.5 kcal/mol

TS4 (Cs)E = 123.0 kcal/mol

TS6 (Cs)E = 110.8 kcal/mol

TS5 (C1)E = 175.7 kcal/mol

CO + H2E = 4.3 kcal/mol

TS8 (Cs)E = 172.7 kcal/mol

TS7 (C1)E = 185.5 kcal/mol

EQ5 (Cs)E = 185.3 kcal/mol

TS9 (C2v)E = 187.4 kcal/mol

CO + H2E = 4.3 kcal/mol

PATH1B

PATH1A

PATH2BPATH2A

PATH2DPATH2C

PATH3BPATH3A

PATH3C

PATH4A

PATH4B PATH4C

PATH5A

PATH5B

O

CH H

O

C

H

H

HC

OH

O

C

H H

H

O

C

H

O

C

H

H

H

C

O

H

H

H

O

CH

OH

C

O

C

H

H

H

H

O

C

O

C

H

H

O

C

H H

H

H

C

O

Known ReactionsKnown ReactionsNew ReactionsNew Reactions

Unknown Region BeforeUnknown Region BeforeThis WorkThis Work

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H2+CO ←→ HCHO

HH

CC

OO

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Map around cis-HCOOH

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Map around trans-HCOOH

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Global Search for HCOOH System

New reactionsNew reactionsKnown reactionsKnown reactions

16 EQ and 46 TS were found16 EQ and 46 TS were found 8 EQ and 36 TS were newly found8 EQ and 36 TS were newly found

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Isomerization Routes of HOCN (Before This Work) 77EQEQ and 9 and 9 TSTS

Page 18: Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492 Christpher Columbus 1498 Vasco daGama 1497 Sebastien Gabbot 1499 Amerigo Vespucci 1519

Global Search for Isomerization of HOCN

9 EQ and 19 EQ and 188TS were foundTS were found 2 EQ and 9 TS were newly found2 EQ and 9 TS were newly found

KnownKnownNewNew

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Reactions of H+NOC

CC

OO

HH

NN

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Application of the SHS Method to findinga new synthetic route with no byproductsa new synthetic route with no byproductsrecommended by economy and environmentsrecommended by economy and environments

IDEA• Find Dissociation Channels by SHS

starting from the aimed compound (A)A → B+C

• Trace back to the initial compounds from the dissociation products (B and C)

B+C → A

Page 21: Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492 Christpher Columbus 1498 Vasco daGama 1497 Sebastien Gabbot 1499 Amerigo Vespucci 1519

New synthetic routes ofAmino acids

from simple molecules

GlycineGlycineCHCH22

NHNH33

COCO22

NHNH22CHCH22COOHCOOH

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Glycine Synthesis via α-lactone

Page 23: Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492 Christpher Columbus 1498 Vasco daGama 1497 Sebastien Gabbot 1499 Amerigo Vespucci 1519

Glycine Synthesis via Ylidefrom CH2 and NH3

Ammonium Ylide

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MethyleneAmmonia

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Page 27: Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492 Christpher Columbus 1498 Vasco daGama 1497 Sebastien Gabbot 1499 Amerigo Vespucci 1519
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Ammonium Ylide

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Glycine Synthesis via Carboxylation of Ammonium Ylide

COCO22

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Ammonium Ylide

Carbon Dioxide

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GlycineCH2 + NH3 + CO2 → H2NCH2COOH

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SummarySummary

Using Scaled Normal Coordinates, Scaled Hypersphere Search (SHS)

Algorithmis developed for finding All ReactionPathways on the Potential Energy Surface.

For a Given Chemical Composition1) All Isomers2) All Dissociation Paths3) All Synthetic Paths

All Reaction Pathways can be Discovered.

This technique may be used to construct an Automated Reaction Automated Reaction SimulatorSimulatorbased on complete mapping of potential energy surface.

NewNew

KnownKnown

Up

hill w

alksU

ph

ill walks

beco

me p

ossib

leb

ecom

e po

ssible

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Participants of this ConferenceParticipants of this Conference& &

→→ CollaboratorsCollaborators ofof this this workworkSatoshi Maeda(JSPS Fellow:DC1)

Tsuyoshi Hirose(B4)

Page 38: Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492 Christpher Columbus 1498 Vasco daGama 1497 Sebastien Gabbot 1499 Amerigo Vespucci 1519

A View from a Saddle PointA View from a Saddle Point

Page 39: Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492 Christpher Columbus 1498 Vasco daGama 1497 Sebastien Gabbot 1499 Amerigo Vespucci 1519

Scaled Hypersphere Search Method for Mapping All Reaction Pathways

on Potential Energy Surface

Development of a New Algorithm

Koichi Ohno

Graduate School of Science, Tohoku University, JAPAN

Page 40: Scaled Hypersphere Search Method for Mapping All Reaction ... · Discovery of New Routes 1492 Christpher Columbus 1498 Vasco daGama 1497 Sebastien Gabbot 1499 Amerigo Vespucci 1519

Scaled Hypersphere Search Method for Mapping All Reaction Pathways

on Potential Energy Surface

Koichi Ohno

Grad. School of Science, Tohoku University,JAPAN

Development of a New Algorithm for Finding All Reaction Pathways