R Packages Installed on ITS machines

Bruce Dudek

Fall Semester 2020

ITS classrooms have R/RStudio installed on Windows machines. This document contains a list of all packagesavailable in those installations. Users who wish to have additional packages installed can contact bdudek atalbany dot edu and the installation can happen rapidly.

Pls note that the base system R packages are listed at the bottom of the table, below the zoo package.

PackageName PackageTitleabd The Analysis of Biological Dataabind Combine Multidimensional ArraysACCLMA ACC & LMA Graph Plottingacepack ACE and AVAS for Selecting Multiple Regression Transformationsada The R Package Ada for Stochastic Boostingaddinmanager RStudio ’addin’ ManageradditivityTests Additivity Tests in the Two Way Anova with Single Sub-class Numbersade4 Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciencesade4TkGUI ’ade4’ Tcl/Tk Graphical User Interfaceadegenet Exploratory Analysis of Genetic and Genomic Dataadegraphics An S4 Lattice-Based Package for the Representation of Multivariate Dataadehabitat Analysis of Habitat Selection by AnimalsadehabitatLT Analysis of Animal MovementsadehabitatMA Tools to Deal with Raster Mapsadephylo Exploratory Analyses for the Phylogenetic Comparative Methodads Spatial Point Patterns AnalysisAED What the package does (short line)AER Applied Econometrics with Rafex Analysis of Factorial Experimentsagricolae Statistical Procedures for Agricultural Researchairports Data on Airportsakima Interpolation of Irregularly and Regularly Spaced DataAlgDesign Algorithmic Experimental Designalphahull Generalization of the Convex Hull of a Sample of Points in the Planealr3 Data to Accompany Applied Linear Regression 3rd Editionalr4 Data to Accompany Applied Linear Regression 4th Editionamap Another Multidimensional Analysis PackageAMCP A Model Comparison PerspectiveAmelia A Program for Missing Dataanacor Simple and Canonical Correspondence Analysisanimation A Gallery of Animations in Statistics and Utilities to Create AnimationsAnnotationDbi Annotation Database Interfaceape Analyses of Phylogenetics and Evolutionaplpack Another Plot Package: ’Bagplots’, ’Iconplots’, ’Summaryplots’, Slider Functions and Othersargparse Command Line Optional and Positional Argument Parser

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arm Data Analysis Using Regression and Multilevel/Hierarchical Modelsarules Mining Association Rules and Frequent ItemsetsarulesViz Visualizing Association Rules and Frequent Itemsetsasbio A Collection of Statistical Tools for Biologistsascii Export R objects to several markup languagesash David Scott’s ASH Routinesaskpass Safe Password Entry for R, Git, and SSHaspace A collection of functions for estimating centrographic statistics and computational geometries for spatial point patternsassertthat Easy Pre and Post AssertionsAUC Threshold independent performance measures for probabilistic classifiers.automap Automatic interpolation packageav Working with Audio and Video in Rbackports Reimplementations of Functions Introduced Since R-3.0.0barcode Barcode distribution plotsbase64 Base64 Encoder and Decoderbase64enc Tools for base64 encodingBayesFactor Computation of Bayes Factors for Common Designsbayesm Bayesian Inference for Marketing/Micro-Econometricsbayesplot Plotting for Bayesian ModelsbayestestR Understand and Describe Bayesian Models and Posterior DistributionsBayesX R Utilities Accompanying the Software Package BayesXBaylorEdPsych R Package for Baylor University Educational Psychology Quantitative CoursesBB Solving and Optimizing Large-Scale Nonlinear Systemsbbmle Tools for General Maximum Likelihood Estimationbcdstats A collection of functions to support B. Dudek’s APSY510/511 classesBDgraph Bayesian Structure Learning in Graphical Models using Birth-Death MCMCbdsmatrix Routines for Block Diagonal Symmetric Matricesbeeswarm The Bee Swarm Plot, an Alternative to Stripchartbenchmark Benchmark Experiments ToolboxBEST Bayesian Estimation Supersedes the t-Testbestglm Best Subset GLM and Regression UtilitiesbestNormalize Normalizing Transformation Functionsbetareg Beta RegressionBH Boost C++ Header FilesBiasedUrn Biased Urn Model Distributionsbibtex Bibtex Parserbiclust BiCluster AlgorithmsBIFIEsurvey Tools for Survey Statistics in Educational Assessmentbigassertr Assertion and Message Functionsbiglm bounded memory linear and generalized linear modelsbigmemory Manage Massive Matrices with Shared Memory and Memory-Mapped Filesbigmemory.sri A shared resource interface for Bigmemory Project packagesbigparallelr Easy Parallel Toolsbigutilsr Utility Functions for Large-scale Databindr Parametrized Active Bindingsbindrcpp An ’Rcpp’ Interface to Active BindingsbinGroup Evaluation and Experimental Design for Binomial Group Testingbinom Binomial Confidence Intervals For Several ParameterizationsBiobase Biobase: Base functions for BioconductorBiocGenerics S4 generic functions for BioconductorBiocInstaller Install/Update Bioconductor, CRAN, and github PackagesBiocManager Access the Bioconductor Project Package RepositoryBiocVersion Set the appropriate version of Bioconductor packagesbit A Class for Vectors of 1-Bit Booleans

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bit64 A S3 Class for Vectors of 64bit Integersbitops Bitwise Operationsblme Bayesian Linear Mixed-Effects Modelsblob A Simple S3 Class for Representing Vectors of Binary Data (’BLOBS’)blockTools Block, Assign, and Diagnose Potential Interference in Randomized ExperimentsBMA Bayesian Model Averagingbold Interface to Bold Systems APIbookdown Authoring Books and Technical Documents with R Markdownboot Bootstrap Functions (Originally by Angelo Canty for S)BootPR Bootstrap Prediction Intervals and Bias-Corrected ForecastingbootRes Bootstrapped Response and Correlation Functionsbootruin A Bootstrap Test for the Probability of Ruin in the Classical Risk Processbootspecdens Testing equality of spectral densitiesbootStepAIC Bootstrap stepAICbootstrap Functions for the Book "An Introduction to the Bootstrap"BradleyTerry2 Bradley-Terry Modelsbrew Templating Framework for Report Generationbrglm Bias Reduction in Binomial-Response Generalized Linear Modelsbridgesampling Bridge Sampling for Marginal Likelihoods and Bayes Factorsbrms Bayesian Regression Models using ’Stan’Brobdingnag Very Large Numbers in Rbroom Convert Statistical Objects into Tidy TibblesBRugs Interface to the ’OpenBUGS’ MCMC SoftwareBSDA Basic Statistics and Data Analysisbtergm Temporal Exponential Random Graph Models by Bootstrapped PseudolikelihoodCairo R Graphics Device using Cairo Graphics Library for Creating High-Quality Bitmap (PNG, JPEG, TIFF), Vector (PDF, SVG, PostScript) and Display (X11 and Win32) OutputcairoDevice Embeddable Cairo Graphics Device Drivercallr Call R from Rcar Companion to Applied RegressionCARBayes Spatial Generalised Linear Mixed Models for Areal Unit DataCARBayesdata Data Used in the Vignettes Accompanying the CARBayes and CARBayesST PackagescarData Companion to Applied Regression Data Setscaret Classification and Regression Trainingcatdata Categorical DatacaTools Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etccba Clustering for Business AnalyticsCDM Cognitive Diagnosis Modelingcellranger Translate Spreadsheet Cell Ranges to Rows and Columnschangepoint Methods for Changepoint Detectioncheckmate Fast and Versatile Argument Checkschemometrics Multivariate Statistical Analysis in Chemometricscherryblossom Cherry Blossom Run Race Resultschron Chronological Objects which can Handle Dates and TimesCircStats Circular Statistics, from "Topics in Circular Statistics" (2001)Ckmeans.1d.dp Optimal, Fast, and Reproducible Univariate Clusteringclass Functions for Classificationclassifly Explore classification models in high dimensionsclassInt Choose Univariate Class Intervalscli Helpers for Developing Command Line Interfacescliapp Create Rich Command Line Applicationsclipr Read and Write from the System Clipboardclisymbols Unicode Symbols at the R Promptcluster "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.clv Cluster Validation Techniques

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cmprsk Subdistribution Analysis of Competing Riskscobs Constrained B-Splines (Sparse Matrix Based)coda Output Analysis and Diagnostics for MCMCcodetools Code Analysis Tools for Rcoin Conditional Inference Procedures in a Permutation Test Frameworkcolorspace A Toolbox for Manipulating and Assessing Colors and Palettescolourpicker A Colour Picker Tool for Shiny and for Selecting Colours in Plotscolourvalues Assigns Colours to Valuescombinat combinatorics utilitiesCommonJavaJars Useful Libraries for Building a Java Based GUI under Rcommonmark High Performance CommonMark and Github Markdown Rendering in RCompQuadForm Distribution Function of Quadratic Forms in Normal VariablesCompRandFld Composite-Likelihood Based Analysis of Random Fieldsconditionz Control How Many Times Conditions are Thrownconquer Convolution-Type Smoothed Quantile Regressioncontfrac Continued Fractionscontrast A Collection of Contrast MethodscopBasic General Bivariate Copula Theory and Many Utility Functionscorpcor Efficient Estimation of Covariance and (Partial) Correlationcorrgram Plot a Correlogramcorrplot Visualization of a Correlation Matrixcovr Test Coverage for Packagescowplot Streamlined Plot Theme and Plot Annotations for ’ggplot2’coxme Mixed Effects Cox Modelscplm Compound Poisson Linear Modelscrayon Colored Terminal Outputcrossdes Construction of Crossover Designscrosstalk Inter-Widget Interactivity for HTML Widgetscrsmeta Extract Coordinate System Metadatacrul HTTP Clientcshapes The CShapes Dataset and Utilitiescsvy Import and Export CSV Data with a YAML Metadata Headerctv CRAN Task Viewscubature Adaptive Multivariate Integration over HypercubesCubist Rule- And Instance-Based Regression Modelingcurl A Modern and Flexible Web Client for RCVST Fast Cross-Validation via Sequential TestingcvTools Cross-validation tools for regression modelscyclocomp Cyclomatic Complexity of R Coded3Network Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from RDAAG Data Analysis and Graphics Data and Functionsdata.table Extension of ‘data.frame‘data.tree General Purpose Hierarchical Data Structuredate Functions for Handling DatesDBI R Database Interfacedbplyr A ’dplyr’ Back End for Databasesdbscan Density Based Clustering of Applications with Noise (DBSCAN) and Related AlgorithmsDCluster Functions for the Detection of Spatial Clusters of Diseasesdcurver Utility Functions for Davidian Curvesddalpha Depth-Based Classification and Calculation of Data Depthdebugme Debug R Packagesdegreenet Models for Skewed Count Distributions Relevant to Networksdeldir Delaunay Triangulation and Dirichlet (Voronoi) Tessellationdendextend Extending ’dendrogram’ Functionality in R

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denstrip Density Strips and Other Methods for Compactly Illustrating DistributionsDEoptimR Differential Evolution Optimization in Pure RdepthTools Depth Tools PackageDeriv Symbolic Differentiationdesc Manipulate DESCRIPTION Filesdescr Descriptive StatisticsDescTools Tools for Descriptive StatisticsdeSolve Solvers for Initial Value Problems of Differential Equations (’ODE’, ’DAE’, ’DDE’)devEMF EMF Graphics Output DeviceDevore7 Data sets from Devore’s "Prob and Stat for Eng (7th ed)"devtools Tools to Make Developing R Packages Easierdfidx Indexed Data Framesdfoptim Derivative-Free Optimizationdiagram Functions for Visualising Simple Graphs (Networks), Plotting Flow DiagramsDiagrammeR Graph/Network Visualizationdials Tools for Creating Tuning Parameter ValuesDiceDesign Designs of Computer Experimentsdichromat Color Schemes for Dichromatsdiffobj Diffs for R Objectsdigest Create Compact Hash Digests of R ObjectsdimRed A Framework for Dimensionality Reductiondiptest Hartigan’s Dip Test Statistic for Unimodality - Correcteddirectlabels Direct Labels for Multicolor Plotsdiseasemapping Modelling Spatial Variation in Disease Risk for Areal Datadismo Species Distribution Modelingdistr Object Oriented Implementation of DistributionsdistrEx Extensions of Package ’distr’divagis Provides tools for quality checks of georeferenced plant species accessions.dlm Bayesian and Likelihood Analysis of Dynamic Linear ModelsdoBy Groupwise Statistics, LSmeans, Linear Contrasts, UtilitiesdoParallel Foreach Parallel Adaptor for the ’parallel’ PackagedoRNG Generic Reproducible Parallel Backend for ’foreach’ LoopsdotCall64 Enhanced Foreign Function Interface Supporting Long Vectorsdownloader Download Files over HTTP and HTTPSdplR Dendrochronology Program Library in Rdplyr A Grammar of Data Manipulationdreamerr Error Handling Made EasyDRR Dimensionality Reduction via RegressionDSpat Spatial Modelling for Distance Sampling DataDT A Wrapper of the JavaScript Library ’DataTables’DTK Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizesdtw Dynamic Time Warping Algorithmsdunn.test Dunn’s Test of Multiple Comparisons Using Rank Sumsdygraphs Interface to ’Dygraphs’ Interactive Time Series Charting LibraryDynamicDistribution Dynamically visualized probability distributions and their momentsdynlm Dynamic Linear Regressione1071 Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wienearth Multivariate Adaptive Regression SplinesEcdat Data Sets for Econometricsecespa Functions for Spatial Point Pattern AnalysisEcfun Functions for EcdatEDR Estimation of the Effective Dimension Reduction (’EDR’) Spaceeeptools Convenience Functions for Education Dataeffects Effect Displays for Linear, Generalized Linear, and Other Models

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effectsize Indices of Effect Size and Standardized Parameterseffsize Efficient Effect Size ComputationElemStatLearn Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedmanellipse Functions for Drawing Ellipses and Ellipse-Like Confidence Regionsellipsis Tools for Working with ...elliptic Weierstrass and Jacobi Elliptic Functionsemdbook Support Functions and Data for "Ecological Models and Data"emmeans Estimated Marginal Means, aka Least-Squares MeansEMT Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate dataenergy E-Statistics: Multivariate Inference via the Energy of DataEpi A Package for Statistical Analysis in EpidemiologyEpiModel Mathematical Modeling of Infectious Disease Dynamicsepitools Epidemiology Toolsergm Fit, Simulate and Diagnose Exponential-Family Models for Networksergm.count Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edgesergmharris Local Health Department network data setes.dif Compute Effect Sizes of the Differenceestimability Tools for Assessing Estimability of Linear Predictionsetm Empirical Transition Matrixevaluate Parsing and Evaluation Tools that Provide More Details than the Defaultevd Functions for Extreme Value DistributionsExact Unconditional Exact Testexcel.link Convenient Data Exchange with Microsoft Excelexpm Matrix Exponential, Log, ’etc’expsmooth Data Sets from "Forecasting with Exponential Smoothing"extrafont Tools for using fontsextrafontdb Package for holding the database for the extrafont packageez Easy Analysis and Visualization of Factorial ExperimentsFactoMineR Multivariate Exploratory Data Analysis and Data MiningfANCOVA Nonparametric Analysis of Covariancefansi ANSI Control Sequence Aware String Functionsfaraway Functions and Datasets for Books by Julian Farawayfarver High Performance Colour Space Manipulationfastcluster Fast Hierarchical Clustering Routines for R and ’Python’fastICA FastICA Algorithms to Perform ICA and Projection Pursuitfastmap Fast Implementation of a Key-Value Storefastmatch Fast match() functionfastR Foundations and Applications of Statistics Using RfBasics Rmetrics - Markets and Basic Statisticsfda Functional Data Analysisfdrtool Estimation of (Local) False Discovery Rates and Higher Criticismfeather R Bindings to the Feather ’API’ff Memory-Efficient Storage of Large Data on Disk and Fast Access Functionsffbase Basic Statistical Functions for Package ’ff’fGarch Rmetrics - Autoregressive Conditional Heteroskedastic Modellingfields Tools for Spatial DataFieldSim Random Fields (and Bridges) Simulationsfilehash Simple Key-Value DatabasefImport Rmetrics - Importing Economic and Financial Datafindpython Functions to Find an Acceptable Python Binaryfishmethods Fishery Science Methods and Modelsfit.models Compare Fitted Modelsfixest Fast Fixed-Effects EstimationsflashClust Implementation of optimal hierarchical clustering

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flexclust Flexible Cluster Algorithmsflexmix Flexible Mixture Modelingflexsurv Flexible Parametric Survival and Multi-State Modelsfloat 32-Bit Floatsflock Process Synchronization Using File Locksfma Data Sets from "Forecasting: Methods and Applications" by Makridakis, Wheelwright & Hyndman (1998)FME A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo AnalysisFNN Fast Nearest Neighbor Search Algorithms and ApplicationsfontBitstreamVera Fonts with ’Bitstream Vera Fonts’ Licensefontcm Computer Modern font for use with extrafont packagefontLiberation Liberation Fontsfontquiver Set of Installed Fontsforcats Tools for Working with Categorical Variables (Factors)foreach Provides Foreach Looping Constructforecast Forecasting Functions for Time Series and Linear Modelsforeign Read Data Stored by ’Minitab’, ’S’, ’SAS’, ’SPSS’, ’Stata’, ’Systat’, ’Weka’, ’dBase’, ...formatR Format R Code AutomaticallyFormula Extended Model Formulasfortunes R Fortunesfpc Flexible Procedures for Clusteringfpp Data for "Forecasting: principles and practice"fracdiff Fractionally Differenced ARIMA aka ARFIMA(P,d,q) Modelsfreetypeharfbuzz Deterministic Computation of Text Box Metricsfs Cross-Platform File System Operations Based on ’libuv’FSA Simple Fisheries Stock Assessment MethodsFSAdata Data to Support Fish Stock Assessment (’FSA’) PackagefTrading Rmetrics - Trading and Rebalancing Financial Instrumentsfts R Interface to ’tslib’ (a Time Series Library in C++)furrr Apply Mapping Functions in Parallel using Futuresfutile.logger A Logging Utility for Rfutile.options Futile Options Managementfuture Unified Parallel and Distributed Processing in R for Everyonefuture.apply Apply Function to Elements in Parallel using FuturesGA Genetic Algorithmsgam Generalized Additive Modelsgamair Data for ’GAMs: An Introduction with R’gamlss Generalised Additive Models for Location Scale and Shapegamlss.data GAMLSS Datagamlss.dist Distributions for Generalized Additive Models for Location Scale and Shapegamm4 Generalized Additive Mixed Models using ’mgcv’ and ’lme4’gapminder Data from Gapmindergargle Utilities for Working with Google APIsgbm Generalized Boosted Regression ModelsgbRd Utilities for processing Rd objects and filesgclus Clustering Graphicsgdata Various R Programming Tools for Data Manipulationgdtools Utilities for Graphical Renderinggee Generalized Estimation Equation Solvergeepack Generalized Estimating Equation Packagegenerics Common S3 Generics not Provided by Base R Methods Related to Model FittingGenKern Functions for generating and manipulating binned kernel density estimatesGenSA Generalized Simulated Annealinggeodist Fast, Dependency-Free Geodesic Distance Calculationsgeojsonsf GeoJSON to Simple Feature Converter

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GEOmap Topographic and Geologic Mappinggeomapdata Data for topographic and Geologic Mappinggeometry Mesh Generation and Surface Tessellationgeonames Interface to the "Geonames" Spatial Query Web ServicegeoR Analysis of Geostatistical DatageoRglm A Package for Generalised Linear Spatial Modelsgeosphere Spherical Trigonometrygeostatsp Geostatistical Modelling with Likelihood and BayesGeoXp Interactive exploratory spatial data analysisGERGM Estimation and Fit Diagnostics for Generalized Exponential Random Graph Modelsgetopt C-Like ’getopt’ BehaviorGGally Extension to ’ggplot2’ggbeeswarm Categorical Scatter (Violin Point) Plotsggbiplot A ggplot2 based biplotggdendro Create Dendrograms and Tree Diagrams Using ’ggplot2’ggeffects Create Tidy Data Frames of Marginal Effects for ’ggplot’ from Model OutputsggExtra Add Marginal Histograms to ’ggplot2’, and More ’ggplot2’ Enhancementsggforce Accelerating ’ggplot2’ggformula Formula Interface to the Grammar of Graphicsggfortify Data Visualization Tools for Statistical Analysis Resultsggm Graphical Markov Models with Mixed Graphsggmap Spatial Visualization with ggplot2ggplot2 Create Elegant Data Visualisations Using the Grammar of Graphicsggplot2movies Movies Dataggpol Visualizing Social Science Data with ’ggplot2’ggpubr ’ggplot2’ Based Publication Ready Plotsggraph An Implementation of Grammar of Graphics for Graphs and Networksggrepel Automatically Position Non-Overlapping Text Labels with ’ggplot2’ggridges Ridgeline Plots in ’ggplot2’ggsci Scientific Journal and Sci-Fi Themed Color Palettes for ’ggplot2’ggsignif Significance Brackets for ’ggplot2’ggstance Horizontal ’ggplot2’ Componentsggthemes Extra Themes, Scales and Geoms for ’ggplot2’GGUM Generalized Graded Unfolding Modelggvis Interactive Grammar of Graphicsgh ’GitHub’ ’API’gifski Highest Quality GIF Encodergit2r Provides Access to Git Repositoriesglasso Graphical Lasso: Estimation of Gaussian Graphical ModelsglmmBUGS Generalised Linear Mixed Models with BUGS and JAGSglmmTMB Generalized Linear Mixed Models using Template Model Builderglmnet Lasso and Elastic-Net Regularized Generalized Linear Modelsglobals Identify Global Objects in R Expressionsglue Interpreted String Literalsgmm Generalized Method of Moments and Generalized Empirical Likelihoodgmodels Various R Programming Tools for Model Fittinggmp Multiple Precision Arithmeticgmt Interface Between GMT Map-Making Software and Rgnm Generalized Nonlinear Modelsgof Model Diagnostics Based on Cumulative Residualsgoftest Classical Goodness-of-Fit Tests for Univariate Distributionsgoogledrive An Interface to Google DrivegooglePolylines Encoding Coordinates into ’Google’ Polylinesgooglesheets Manage Google Spreadsheets from R

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googlesheets4 Access Google Sheets using the Sheets API V4googleVis R Interface to Google Chartsgower Gower’s Distancegpairs The Generalized Pairs PlotGPArotation GPA Factor Rotationgpclib General Polygon Clipping Library for RGPfit Gaussian Processes Modelinggplots Various R Programming Tools for Plotting Datagranova Graphical Analysis of VariancegranovaGG Graphical Analysis of Variance Using ggplot2graph graph: A package to handle graph data structuresgraphlayouts Additional Layout Algorithms for Network VisualizationsGREA Gotta Read ’Em AllgridBase Integration of base and grid graphicsgridExtra Miscellaneous Functions for "Grid" GraphicsgridGraphics Redraw Base Graphics Using ’grid’ Graphicsgrouped Regression Analysis of Grouped and Coarse Datagrpreg Regularization Paths for Regression Models with Grouped Covariatesgsl Wrapper for the Gnu Scientific Librarygss General Smoothing Splinesgstat Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulationgt Easily Create Presentation-Ready Display Tablesgtable Arrange ’Grobs’ in Tablesgtheory Apply Generalizability Theory with Rgtools Various R Programming ToolsGuerry Maps, Data and Methods Related to Guerry (1833) "Moral Statistics of France"gvlma Global Validation of Linear Models AssumptionsgWidgets gWidgets API for Building Toolkit-Independent, Interactive GUIsgWidgets2 Rewrite of gWidgets API for Simplified GUI ConstructiongWidgets2tcltk Toolkit Implementation of gWidgets2 for tcltkgWidgetsRGtk2 Toolkit Implementation of gWidgets for RGtk2gWidgetstcltk Toolkit implementation of gWidgets for tcltk packageHandTill2001 Multiple Class Area under ROC Curvehardhat Construct Modeling Packageshaven Import and Export ’SPSS’, ’Stata’ and ’SAS’ Fileshdeco Hierarchical DECOmposition of Entropy for Categorical Map Comparisonshdi High-Dimensional InferenceHDInterval Highest (Posterior) Density Intervalshdrcde Highest Density Regions and Conditional Density Estimationheplots Visualizing Hypothesis Tests in Multivariate Linear Modelshere A Simpler Way to Find Your Fileshexbin Hexagonal Binning RoutinesHH Statistical Analysis and Data Display: Heiberger and Hollandhighlight Syntax Highlighterhighr Syntax Highlighting for R Source CodeHistData Data Sets from the History of Statistics and Data Visualizationhmeasure The H-Measure and Other Scalar Classification Performance MetricsHmisc Harrell Miscellaneoushms Pretty Time of Dayhrbrmisc What the Package Does (one line, title case)hrbrthemes Additional Themes, Theme Components and Utilities for ’ggplot2’HSAUR A Handbook of Statistical Analyses Using R (1st Edition)HSAUR2 A Handbook of Statistical Analyses Using R (2nd Edition)htmlTable Advanced Tables for Markdown/HTML

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htmltools Tools for HTMLhtmlwidgets HTML Widgets for Rhttpcode ’HTTP’ Status Code Helperhttpuv HTTP and WebSocket Server Libraryhttr Tools for Working with URLs and HTTPhuge High-Dimensional Undirected Graph Estimationhunspell High-Performance Stemmer, Tokenizer, and Spell Checkerhwriter HTML Writer - Outputs R objects in HTML formathypergeo The Gauss Hypergeometric Functionic.infer Inequality Constrained Inference in Linear Normal SituationsICC Facilitating Estimation of the Intraclass Correlation CoefficientICS Tools for Exploring Multivariate Data via ICS/ICAICSNP Tools for Multivariate NonparametricsICSOutlier Outlier Detection Using Invariant Coordinate Selectionids Generate Random Identifiersigraph Network Analysis and Visualizationigraphdata A Collection of Network Data Sets for the ’igraph’ Packageindicspecies Relationship Between Species and Groups of Sitesineq Measuring Inequality, Concentration, and Povertyinfer Tidy Statistical InferenceinfluenceR Software Tools to Quantify Structural Importance of Nodes in a Networkini Read and Write ’.ini’ Filesinline Functions to Inline C, C++, Fortran Function Calls from Rinlinedocs Convert Inline Comments to Documentationinlmisc Miscellaneous Functions for the USGS INL Project Officeinsight Easy Access to Model Information for Various Model Objectsinstallr Using R to Install Stuff on Windows OS (Such As: R, ’Rtools’, ’RStudio’, ’Git’, and More!)intamap Procedures for Automated InterpolationintamapInteractive Interactive Add-on Functionality for ’intamap’intergraph Coercion Routines for Network Data Objectsintervals Tools for Working with Points and Intervalsinum Interval and Enum-Type Representation of Vectorsinvgamma The Inverse Gamma Distributioniplots iPlots - interactive graphics for Ripred Improved PredictorsIRanges Infrastructure for manipulating intervals on sequencesIRdisplay ’Jupyter’ Display Machineryirlba Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matricesisoband Generate Isolines and Isobands from Regularly Spaced Elevation GridsISOcodes Selected ISO CodesISwR Introductory Statistics with Riterators Provides Iterator Constructitertools Iterator Toolsits Irregular Time Seriesjaneaustenr Jane Austen’s Complete NovelsJavaGD Java Graphics DeviceJGR Java GUI for RjoineRML Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomesjomo Multilevel Joint Modelling Multiple Imputationjpeg Read and write JPEG imagesjsonify Convert Between ’R’ Objects and Javascript Object Notation (JSON)jsonlite A Robust, High Performance JSON Parser and Generator for Rjtools Analysis and Presentation of Social Scientific DatakableExtra Construct Complex Table with ’kable’ and Pipe Syntax

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kappalab Non-Additive Measure and Integral Manipulation FunctionsKendall Kendall rank correlation and Mann-Kendall trend testkernlab Kernel-Based Machine Learning LabKernSmooth Functions for Kernel Smoothing Supporting Wand & Jones (1995)KFAS Kalman Filter and Smoother for Exponential Family State Space ModelsklaR Classification and Visualizationkm.ci Confidence intervals for the Kaplan-Meier estimatorknitr A General-Purpose Package for Dynamic Report Generation in RkoRpus An R Package for Text Analysisks Kernel SmoothingKScorrect Lilliefors-Corrected Kolmogorov-Smirnov Goodness-of-Fit Testskutils Project Management Toolslabdsv Ordination and Multivariate Analysis for Ecologylabeling Axis Labelinglabelled Manipulating Labelled Datalaeken Estimation of Indicators on Social Exclusion and PovertyLahman Sean ’Lahman’ Baseball Databaselambda.r Modeling Data with Functional ProgrammingLambertW Probabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed DatalamW Lambert-W FunctionlanguageR Analyzing Linguistic Data: A Practical Introduction to Statisticslars Least Angle Regression, Lasso and Forward Stagewiselatentnet Latent Position and Cluster Models for Statistical Networkslater Utilities for Scheduling Functions to Execute Later with Event Loopslattice Trellis Graphics for RlatticeExtra Extra Graphical Utilities Based on Latticelava Latent Variable Modelslavaan Latent Variable Analysislavaan.survey Complex Survey Structural Equation Modeling (SEM)lawstat Tools for Biostatistics, Public Policy, and Lawlazyeval Lazy (Non-Standard) Evaluationleafem ’leaflet’ Extensions for ’mapview’leaflet Create Interactive Web Maps with the JavaScript ’Leaflet’ Libraryleaflet.providers Leaflet Providersleafpop Include Tables, Images and Graphs in Leaflet Pop-Upsleafsync Small Multiples for Leaflet Web Mapsleaps Regression Subset SelectionLearnBayes Functions for Learning Bayesian InferenceLearnEDA Functions for Learning Exploratory Data AnalysislessR Less Code, More Resultslfda Local Fisher Discriminant Analysislfe Linear Group Fixed Effectslgr A Fully Featured Logging Frameworklhs Latin Hypercube Sampleslibcoin Linear Test Statistics for Permutation Inferencelifecycle Manage the Life Cycle of your Package Functionslikert Analysis and Visualization Likert Itemslinprog Linear Programming / Optimizationlintr A ’Linter’ for R CodelisrelToR Import output from LISREL into Rlistenv Environments Behaving (Almost) as Listslmboot Bootstrap in Linear Modelslme4 Linear Mixed-Effects Models using ’Eigen’ and S4lmerTest Tests in Linear Mixed Effects Models

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lmodel2 Model II Regressionlmomco L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments, and Many DistributionsLmoments L-Moments and Quantile MixtureslmPerm Permutation Tests for Linear Modelslmtest Testing Linear Regression Modelsloa Lattice Options and Add-Inslocfit Local Regression, Likelihood and Density Estimationlogcondens Estimate a Log-Concave Probability Density from Iid Observationslogspline Routines for Logspline Density Estimationlongmemo Statistics for Long-Memory Processes (Book Jan Beran), and Related Functionalityloo Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian ModelslpSolve Interface to ’Lp_solve’ v. 5.5 to Solve Linear/Integer ProgramslpSolveAPI R Interface to ’lp_solve’ Version 5.5.2.0LSD Lots of Superior Depictionslsmeans Least-Squares Meanslsr Companion to "Learning Statistics with R"ltm Latent Trait Models under IRTlubridate Make Dealing with Dates a Little Easierlwgeom Bindings to Selected ’liblwgeom’ Functions for Simple FeaturesMAd Meta-Analysis with Mean Differencesmagic Create and Investigate Magic Squaresmagick Advanced Graphics and Image-Processing in Rmagrittr A Forward-Pipe Operator for Rmail Sending Email Notifications from Rmanipulate Interactive Plots for RStudiomanipulateWidget Add Even More Interactivity to Interactive Chartsmapdata Extra Map Databasesmapdeck Interactive Maps Using ’Mapbox GL JS’ and ’Deck.gl’mapmisc Utilities for Producing Mapsmapproj Map Projectionsmaps Draw Geographical Mapsmaptools Tools for Handling Spatial Objectsmaptree Mapping, pruning, and graphing tree modelsmapview Interactive Viewing of Spatial Data in Rmarkdown Render Markdown with the C Library ’Sundown’marked Mark-Recapture Analysis for Survival and Abundance EstimationMASS Support Functions and Datasets for Venables and Ripley’s MASSMatching Multivariate and Propensity Score Matching with Balance OptimizationMatchIt Nonparametric Preprocessing for Parametric Causal Inferencematrixcalc Collection of functions for matrix calculationsMatrixModels Modelling with Sparse And Dense MatricesmatrixStats Functions that Apply to Rows and Columns of Matrices (and to Vectors)maxent Low-memory Multinomial Logistic Regression with Support for Text ClassificationmaxLik Maximum Likelihood Estimation and Related ToolsMBA Multilevel B-Spline ApproximationMBESS The MBESS R Packagemboost Model-Based Boostingmc2d Tools for Two-Dimensional Monte-Carlo Simulationsmclust Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimationmcmc Markov Chain Monte CarloMCMCglmm MCMC Generalised Linear Mixed ModelsMCMCpack Markov Chain Monte Carlo (MCMC) PackagemcplR Multiple Cue Probability Learning in Rmda Mixture and Flexible Discriminant Analysis

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mediation Causal Mediation Analysismemisc Management of Survey Data and Presentation of Analysis Resultsmemoise Memoisation of FunctionsMEMSS Data Sets from Mixed-Effects Models in Smetafor Meta-Analysis Package for Rmets Analysis of Multivariate Event Timesmgcv Mixed GAM Computation Vehicle with Automatic Smoothness Estimationmi Missing Data Imputation and Model Checkingmice Multivariate Imputation by Chained Equationsmiceadds Some Additional Multiple Imputation Functions, Especially for ’mice’microbenchmark Accurate Timing Functionsmime Map Filenames to MIME TypesminiUI Shiny UI Widgets for Small Screensminpack.lm R Interface to the Levenberg-Marquardt Nonlinear Least-Squares Algorithm Found in MINPACK, Plus Support for Boundsminqa Derivative-free optimization algorithms by quadratic approximationmirt Multidimensional Item Response Theorymisc3d Miscellaneous 3D PlotsmiscTools Miscellaneous Tools and UtilitiesmissMDA Handling Missing Values with Multivariate Data Analysismitml Tools for Multiple Imputation in Multilevel Modelingmitools Tools for Multiple Imputation of Missing Datamix Estimation/Multiple Imputation for Mixed Categorical and Continuous Datamlbench Machine Learning Benchmark ProblemsmlmRev Examples from Multilevel Modelling Software Reviewmlogit Multinomial Logit ModelsMNM Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranksmnormt The Multivariate Normal and t Distributions, and Their Truncated Versionsmodelbased Estimation of Model-Based Predictions, Contrasts and Meansmodeldata Data Sets Used Useful for Modeling PackagesModelMap Modeling and Map Production using Random Forest and Related Stochastic ModelsModelMetrics Rapid Calculation of Model Metricsmodelr Modelling Functions that Work with the Pipemodeltools Tools and Classes for Statistical Modelsmoments Moments, cumulants, skewness, kurtosis and related testsmondate Keep track of dates in terms of monthsmosaic Project MOSAIC Statistics and Mathematics Teaching UtilitiesmosaicCalc Function-Based Numerical and Symbolic Differentiation and AntidifferentiationmosaicCore Common Utilities for Other MOSAIC-Family PackagesmosaicData Project MOSAIC Data SetsMPV Data Sets from Montgomery, Peck and Viningmratios Ratios of Coefficients in the General Linear Modelmsm Multi-State Markov and Hidden Markov Models in Continuous Timemstate Data Preparation, Estimation and Prediction in Multi-State ModelsMSwM Fitting Markov Switching Modelsmuhaz Hazard Function Estimation in Survival Analysismultcomp Simultaneous Inference in General Parametric ModelsmultcompView Visualizations of Paired Comparisonsmulticool Permutations of Multisets in Cool-Lex Ordermultilevel Multilevel Functionsmultiwayvcov Multi-Way Standard Error Clusteringmulttest Resampling-based multiple hypothesis testingmunsell Utilities for Using Munsell Coloursmutoss Unified Multiple Testing ProceduresmutossGUI A Graphical User Interface for the MuToss Project

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MVN Multivariate Normality Testsmvnfast Fast Multivariate Normal and Student’s t Methodsmvoutlier Multivariate Outlier Detection Based on Robust Methodsmvtnorm Multivariate Normal and t Distributionsnabor Wraps ’libnabo’, a Fast K Nearest Neighbour Library for Low DimensionsNADA Nondetects and Data Analysis for Environmental Datanatserv ’NatureServe’ Interfacencdf Interface to Unidata netCDF Data Filesncdf4 Interface to Unidata netCDF (Version 4 or Earlier) Format Data Filesncf Spatial Covariance Functionsndtv Network Dynamic Temporal Visualizationsnetwork Classes for Relational DatanetworkDynamic Dynamic Extensions for Network Objectsnetworksis Simulate Bipartite Graphs with Fixed Marginals Through Sequential Importance Samplingneuralnet Training of Neural NetworksnFactors Parallel Analysis and Other Non Graphical Solutions to the Cattell Scree TestNHANES Data from the US National Health and Nutrition Examination Studynleqslv Solve Systems of Nonlinear Equationsnlme Linear and Nonlinear Mixed Effects Modelsnloptr R Interface to NLoptNLP Natural Language Processing Infrastructurenlstools Tools for Nonlinear Regression AnalysisNMF Algorithms and Framework for Nonnegative Matrix Factorization (NMF)nnet Feed-Forward Neural Networks and Multinomial Log-Linear Modelsnnls The Lawson-Hanson algorithm for non-negative least squares (NNLS)nor1mix Normal aka Gaussian (1-d) Mixture Models (S3 Classes and Methods)normalp Routines for Exponential Power Distributionnormtest Tests for Normalitynortest Tests for Normalitynp Nonparametric Kernel Smoothing Methods for Mixed Data TypesNSM3 Functions and Datasets to Accompany Hollander, Wolfe, and Chicken - Nonparametric Statistical Methods, Third EditionnumDeriv Accurate Numerical Derivativesnycflights13 Flights that Departed NYC in 2013odbc Connect to ODBC Compatible Databases (using the DBI Interface)odfWeave Sweave processing of Open Document Format (ODF) filesofficer Manipulation of Microsoft Word and PowerPoint Documentsolsrr Tools for Building OLS Regression Modelsopenintro Data Sets and Supplemental Functions from ’OpenIntro’ Textbooks and LabsOpenMx Extended Structural Equation Modellingopenssl Toolkit for Encryption, Signatures and Certificates Based on OpenSSLopenxlsx Read, Write and Edit xlsx Filesoptextras Tools to Support Optimization Possibly with Bounds and Masksoptimx Expanded Replacement and Extension of the ’optim’ Functionoptpart Optimal Partitioning of Similarity Relationsorcutt Estimate Procedure in Case of First Order Autocorrelationordinal Regression Models for Ordinal Dataore An R Interface to the Onigmo Regular Expression Libraryorientlib Support for Orientation Dataorloca Operations Research LOCational Analysis Modelsorloca.es Spanish version of orloca package. Modelos de localizacion en investigacion operativaorthopolynom Collection of functions for orthogonal and orthonormal polynomialsoutliers Tests for outliersoz Plot the Australian Coastline and Statespackrat A Dependency Management System for Projects and their R Package Dependencies

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pairsD3 D3 Scatterplot Matricespamm Power Analysis for Random Effects in Mixed Modelspamr Pam: Prediction Analysis for Microarrayspan Multiple Imputation for Multivariate Panel or Clustered Datapander An R ’Pandoc’ Writerparameters Processing of Model Parametersparsedate Recognize and Parse Dates in Various Formats, Including All ISO 8601 Formatsparsnip A Common API to Modeling and Analysis Functionspartitions Additive Partitions of Integersparty A Laboratory for Recursive Partytioningpartykit A Toolkit for Recursive Partytioningpastecs Package for Analysis of Space-Time Ecological Seriespbapply Adding Progress Bar to ’*apply’ Functionspbivnorm Vectorized Bivariate Normal CDFpbkrtest Parametric Bootstrap and Kenward Roger Based Methods for Mixed Model ComparisonPBSmapping Mapping Fisheries Data and Spatial Analysis Toolspbv Probabilities for Bivariate Normal DistributionpcaPP Robust PCA by Projection Pursuitpdftools Text Extraction, Rendering and Converting of PDF Documentspequod Moderated Regression Packageperformance Assessment of Regression Models PerformancePerformanceAnalytics Econometric Tools for Performance and Risk Analysispermtest Permutation test to compare variability within and distance between two groupspermuco Permutation Tests for Regression, (Repeated Measures) ANOVA/ANCOVA and Comparison of Signalspermute Functions for Generating Restricted Permutations of Datapgirmess Spatial Analysis and Data Mining for Field Ecologistsphangorn Phylogenetic Reconstruction and Analysisphia Post-Hoc Interaction Analysisphylobase Base Package for Phylogenetic Structures and Comparative Datapillar Coloured Formatting for Columnspingr Check if a Remote Computer is Uppixmap Bitmap Images (“Pixel Maps”)pkgbuild Find Tools Needed to Build R Packagespkgconfig Private Configuration for ’R’ Packagespkgdown Make Static HTML Documentation for a PackagepkgKitten Create Simple Packages Which Do not Upset R Package Checkspkgload Simulate Package Installation and Attachpkgmaker Development Utilities for R PackagesPKI Public Key Infrastucture for R Based on the X.509 StandardPKPDmodels Pharmacokinetic/pharmacodynamic modelsplaywith A GUI for interactive plots using GTK+plm Linear Models for Panel Dataplogr The ’plog’ C++ Logging Libraryplot3D Plotting Multi-Dimensional Dataplot3Drgl Plotting Multi-Dimensional Data - Using ’rgl’plotly Create Interactive Web Graphics via ’plotly.js’plotmo Plot a Model’s Residuals, Response, and Partial Dependence Plotsplotrix Various Plotting Functionspls Partial Least Squares and Principal Component Regressionplyr Tools for Splitting, Applying and Combining Datapmg Poor Man’s GUIpmml Generate PMML for Various ModelspmmlTransformations Transforms Input Data from a PMML Perspectivepng Read and write PNG images

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poLCA Polytomous variable Latent Class Analysispolspline Polynomial Spline Routinespolyclip Polygon Clippingpolycor Polychoric and Polyserial Correlationspolynom A Collection of Functions to Implement a Class for Univariate Polynomial Manipulationspool Object Poolingportfolio Analysing Equity Portfoliosppcor Partial and Semi-Partial (Part) Correlationpps Functions for PPS samplingprabclus Functions for Clustering and Testing of Presence-Absence, Abundance and Multilocus Genetic Datapracma Practical Numerical Math Functionspraise Praise Usersprediction Tidy, Type-Safe ’prediction()’ Methodsprefmod Utilities to Fit Paired Comparison Models for PreferencesPresenceAbsence Presence-Absence Model Evaluation.prettycode Pretty Print R Code in the TerminalprettyR Pretty Descriptive Statsprettyunits Pretty, Human Readable Formatting of QuantitiespROC Display and Analyze ROC Curvesprocessx Execute and Control System Processesprodlim Product-Limit Estimation for Censored Event History AnalysisprofileModel Profiling Inference Functions for Various Model Classesprogress Terminal Progress BarsPROJ Generic Coordinate System Transformations Using ’PROJ’proj4 A simple interface to the PROJ.4 cartographic projections librarypromises Abstractions for Promise-Based Asynchronous Programmingproto Prototype Object-Based Programmingproxy Distance and Similarity Measurespryr Tools for Computing on the Languageps List, Query, Manipulate System Processespscl Political Science Computational Laboratorypsgp Projected Spatial Gaussian Process Methodspso Particle Swarm Optimizationpsy Various procedures used in psychometrypsych Procedures for Psychological, Psychometric, and Personality Researchpsychometric Applied Psychometric Theorypsychotools Psychometric Modeling Infrastructurepsyphy Functions for analyzing psychophysical data in Rpurrr Functional Programming Toolspwr Basic Functions for Power Analysisqap Heuristics for the Quadratic Assignment Problem (QAP)qcc Quality Control Chartsqgraph Graph Plotting Methods, Psychometric Data Visualization and Graphical Model Estimationqpdf Split, Combine and Compress PDF Filesquadprog Functions to Solve Quadratic Programming Problemsquantmod Quantitative Financial Modelling FrameworkQuantPsyc Quantitative Psychology Toolsquantreg Quantile Regressionquestionr Functions to Make Surveys Processing Easierqvcalc Quasi Variances for Factor Effects in Statistical ModelsR.cache Fast and Light-Weight Caching (Memoization) of Objects and Results to Speed Up ComputationsR.devices Unified Handling of Graphics DevicesR.matlab Read and Write MAT Files and Call MATLAB from Within RR.methodsS3 S3 Methods Simplified

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R.oo R Object-Oriented Programming with or without ReferencesR.rsp Dynamic Generation of Scientific ReportsR.utils Various Programming UtilitiesR2admb ’ADMB’ to R Interface FunctionsR2HTML HTML Exportation for R ObjectsR2wd Write MS-Word documents from RR2WinBUGS Running ’WinBUGS’ and ’OpenBUGS’ from ’R’ / ’S-PLUS’R6 Encapsulated Classes with Reference Semanticsramps Bayesian Geostatistical Modeling with RAMPSrandomcoloR Generate Attractive Random ColorsRandomFields Simulation and Analysis of Random FieldsRandomFieldsUtils Utilities for the Simulation and Analysis of Random FieldsrandomForest Breiman and Cutler’s Random Forests for Classification and RegressionrandomForestSRC Fast Unified Random Forests for Survival, Regression, and Classification (RF-SRC)randomizr Easy-to-Use Tools for Common Forms of Random Assignment and Samplingrandtoolbox Toolbox for Pseudo and Quasi Random Number Generation and Random Generator Testsranger A Fast Implementation of Random ForestsRANN Fast Nearest Neighbour Search (Wraps ANN Library) Using L2 Metricrapidjsonr ’Rapidjson’ C++ Header Filesrappdirs Application Directories: Determine Where to Save Data, Caches, and LogsRArcInfo Functions to import data from Arc/Info V7.x binary coveragesrARPACK Solvers for Large Scale Eigenvalue and SVD Problemsraster Geographic Data Analysis and ModelingrasterVis Visualization Methods for Raster Datarattle Graphical User Interface for Data Science in Rrbenchmark Benchmarking routine for RRcapture Loglinear Models for Capture-Recapture Experimentsrcartocolor ’CARTOColors’ PalettesRcgmin Conjugate Gradient Minimization of Nonlinear Functionsrcmdcheck Run ’R CMD check’ from ’R’ and Capture ResultsRcmdr R CommanderRcmdrMisc R Commander Miscellaneous FunctionsRcmdrPlugin.coin Rcmdr Coin Plug-InRcmdrPlugin.depthTools R commander Depth Tools Plug-InRcmdrPlugin.epack Rcmdr plugin for time seriesRcmdrPlugin.Export Export R Output to LaTeX or HTMLRcmdrPlugin.FactoMineR Graphical User Interface for FactoMineRRcmdrPlugin.HH Rcmdr Support for the HH PackageRcmdrPlugin.IPSUR An IPSUR Plugin for the R CommanderRcmdrPlugin.orloca A GUI for Planar Location ProblemsRcmdrPlugin.qcc Rcmdr qcc Plug-InRcmdrPlugin.qual Rcmdr plugin for quality control courseRcmdrPlugin.sampling Tools for sampling in Official Statistical SurveysRcmdrPlugin.survival R Commander Plug-in for the ’survival’ PackageRcmdrPlugin.SurvivalT Rcmdr Survival Plug-InRcmdrPlugin.TeachingDemos Rcmdr Teaching Demos Plug-inRColorBrewer ColorBrewer Palettesrcompanion Functions to Support Extension Education Program EvaluationRcpp Seamless R and C++ IntegrationRcppArmadillo ’Rcpp’ Integration for the ’Armadillo’ Templated Linear Algebra LibraryRcppEigen ’Rcpp’ Integration for the ’Eigen’ Templated Linear Algebra LibraryRcppParallel Parallel Programming Tools for ’Rcpp’RcppProgress An Interruptible Progress Bar with OpenMP Support for C++ in R PackagesRcppRoll Efficient Rolling / Windowed Operations

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Rcsdp R Interface to the CSDP Semidefinite Programming LibraryRCurl General Network (HTTP/FTP/...) Client Interface for RRd2roxygen Convert Rd to ’Roxygen’ DocumentationRdpack Update and Manipulate Rd Documentation ObjectsreadODS Read and Write ODS Filesreadr Read Rectangular Text Datareadstata13 Import ’Stata’ Data Filesreadxl Read Excel Filesrecipes Preprocessing Tools to Create Design Matricesregistry Infrastructure for R Package Registriesregress Gaussian Linear Models with Linear Covariance Structureregsem Regularized Structural Equation Modelingrela Item Analysis Package with Standard Errorsrelaimpo Relative Importance of Regressors in Linear Modelsrelations Data Structures and Algorithms for Relationsrelevent Relational Event Modelsrelimp Relative Contribution of Effects in a Regression Modelrem Relational Event Models (REM)rematch Match Regular Expressions with a Nicer ’API’rematch2 Tidy Output from Regular Expression Matchingremotes R Package Installation from Remote Repositories, Including ’GitHub’rentrez ’Entrez’ in Rrepmis Miscellaneous Tools for Reproducible Researchreportr A General Message and Error Reporting Systemrepr Serializable Representationsreprex Prepare Reproducible Example Code via the Clipboardreproj Coordinate System Transformations for Generic Map Dataresample Resampling Functionsreshape Flexibly Reshape Datareshape2 Flexibly Reshape Data: A Reboot of the Reshape Packagereticulate Interface to ’Python’rex Friendly Regular ExpressionsRfit Rank-Based Estimation for Linear ModelsRFOC Graphics for Spherical Distributions and Earthquake Focal Mechanismsrgdal Bindings for the ’Geospatial’ Data Abstraction Libraryrgenoud R Version of GENetic Optimization Using Derivativesrgeos Interface to Geometry Engine - Open Source (’GEOS’)rgexf Build, Import and Export GEXF Graph Filesrggobi Interface Between R and ’GGobi’rgl 3D Visualization Using OpenGLrglwidget ’rgl’ in ’htmlwidgets’ FrameworkRgoogleMaps Overlays on Static MapsRgraphviz Provides plotting capabilities for R graph objectsRGtk2 R Bindings for Gtk 2.8.0 and AboveRGtk2Extras Data frame editor and dialog making wrapper for RGtk2rhandsontable Interface to the ’Handsontable.js’ LibraryRhpcBLASctl Control the Number of Threads on ’BLAS’rio A Swiss-Army Knife for Data I/Oritis Integrated Taxonomic Information System Clientrjags Bayesian Graphical Models using MCMCrJava Low-Level R to Java Interfacerjson JSON for RRJSONIO Serialize R Objects to JSON, JavaScript Object Notationrlang Functions for Base Types and Core R and ’Tidyverse’ Features

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RMark R Code for Mark Analysisrmarkdown Dynamic Documents for Rrmeta Meta-AnalysisRmpfr R MPFR - Multiple Precision Floating-Point ReliableRmpi Interface (Wrapper) to MPI (Message-Passing Interface)rms Regression Modeling StrategiesRMySQL Database Interface and ’MySQL’ Driver for Rrncl An Interface to the Nexus Class LibraryRNeXML Semantically Rich I/O for the ’NeXML’ Formatrngtools Utility Functions for Working with Random Number GeneratorsrngWELL Toolbox for WELL Random Number GeneratorsrobCompositions Compositional Data Analysisrobust Port of the S+ "Robust Library"robustbase Basic Robust Statisticsrockchalk Regression Estimation and PresentationROCR Visualizing the Performance of Scoring ClassifiersRODBC ODBC Database AccessRook Rook - a web server interface for RrootSolve Nonlinear Root Finding, Equilibrium and Steady-State Analysis of Ordinary Differential Equationsrotl Interface to the ’Open Tree of Life’ APIroxygen Literate Programming in Rroxygen2 In-Line Documentation for Rrpanel Simple Interactive Controls for R using the ’tcltk’ Packagerpart Recursive Partitioning and Regression Treesrpart.plot Plot ’rpart’ Models: An Enhanced Version of ’plot.rpart’rpf Response Probability FunctionsRPMG Graphical User Interface (GUI) for Interactive R Analysis SessionsRPostgres ’Rcpp’ Interface to ’PostgreSQL’RPostgreSQL R Interface to the ’PostgreSQL’ Database Systemrprojroot Finding Files in Project SubdirectoriesRPyGeo ArcGIS Geoprocessing via Pythonrrcov Scalable Robust Estimators with High Breakdown Pointrredlist ’IUCN’ Red List ClientRSAGA SAGA Geoprocessing and Terrain Analysisrsample General Resampling Infrastructurersconnect Deployment Interface for R Markdown Documents and Shiny Applicationsrscproxy statconn: provides portable C-style interface to R (StatConnector)RSEIS Seismic Time Series Analysis ToolsRSiena Siena - Simulation Investigation for Empirical Network AnalysisRsolnp General Non-Linear OptimizationRSpectra Solvers for Large-Scale Eigenvalue and SVD ProblemsRSQLite ’SQLite’ Interface for Rrstan R Interface to Stanrstanarm Bayesian Applied Regression Modeling via Stanrstantools Tools for Developing R Packages Interfacing with ’Stan’rstatix Pipe-Friendly Framework for Basic Statistical TestsRstem Interface to Snowball implementation of Porter’s word stemming algorithm.rstudioapi Safely Access the RStudio APIRStudioConsoleRender RStudio addin for rendering an Rmarkdown document in the consoleRSurvey Geographic Information System Applicationrsvg Render SVG Images into PDF, PNG, PostScript, or Bitmap ArraysRSVGTipsDevice An R SVG Graphics Device with Dynamic Tips and Hyperlinksrtiff Read and Write TIFF FilesRtsne T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation

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Rttf2pt1 ’ttf2pt1’ ProgramRUnit R Unit Test Frameworkrversions Query ’R’ Versions, Including ’r-release’ and ’r-oldrel’rvest Easily Harvest (Scrape) Web PagesRvmmin Variable Metric Nonlinear Function MinimizationRwave Time-Frequency Analysis of 1-D SignalsRWiener Wiener Process Distribution Functionsrworldmap Mapping Global Datarworldxtra Country boundaries at high resolution.S4Vectors S4 implementation of vector-like and list-like objectssampleSelection Sample Selection Modelssamplesize Sample Size Calculation for Various t-Tests and Wilcoxon-TestSampleSizeMeans Sample size calculations for normal meansSampleSizeProportions Calculating sample size requirements when estimating the difference between two binomial proportionssampling Survey Samplingsamplingbook Survey Sampling Proceduressandwich Robust Covariance Matrix Estimatorssas7bdat SAS Database Reader (experimental)SASmixed Data sets from "SAS System for Mixed Models"sass Syntactically Awesome Style Sheets (’Sass’)satellite Handling and Manipulating Remote Sensing Datascagnostics Compute scagnostics - scatterplot diagnosticsscales Scale Functions for Visualizationscalreg Scaled Sparse Linear Regressionscatterplot3d 3D Scatter Plotscholar Analyse Citation Data from Google Scholarscico Colour Palettes Based on the Scientific Colour-Mapssciplot Scientific Graphing Functions for Factorial DesignsSCRT Single-Case Randomization Testssee Visualisation Toolbox for ’easystats’ and Extra Geoms, Themes and Color Palettes for ’ggplot2’segmented Regression Models with Break-Points / Change-Points Estimationselectr Translate CSS Selectors to XPath Expressionssem Structural Equation ModelsSemiPar Semiparametic RegressionsemPlot Path Diagrams and Visual Analysis of Various SEM Packages’ OutputsemTools Useful Tools for Structural Equation Modelingsendplot Tool for sending interactive plots with tool-tip content.SensoMineR Sensory Data Analysisseqinr Biological Sequences Retrieval and Analysisseriation Infrastructure for Ordering Objects Using Seriationservr A Simple HTTP Server to Serve Static Files or Dynamic Documentssessioninfo R Session InformationsetRNG Set (Normal) Random Number Generator and Seedsets Sets, Generalized Sets, Customizable Sets and Intervalssf Simple Features for Rsfheaders Converts Between R Objects and Simple Feature Objectssfsmisc Utilities from ’Seminar fuer Statistik’ ETH Zurichsgeostat An Object-Oriented Framework for Geostatistical Modeling in S+shape Functions for Plotting Graphical Shapes, Colorsshapefiles Read and Write ESRI Shapefilesshiny Web Application Framework for RshinyBS Twitter Bootstrap Components for Shinyshinybusy Busy Indicator for ’Shiny’ Applicationsshinyjs Easily Improve the User Experience of Your Shiny Apps in Seconds

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shinyRGL Shiny Wrappers for RGLshinysky A set of Shiny UI components/widgets.shinystan Interactive Visual and Numerical Diagnostics and Posterior Analysis for Bayesian Modelsshinytest Test Shiny Appsshinythemes Themes for Shinyshowimage Show an Image on an ’R’ Graphics Devicesignal Signal ProcessingSimComp Simultaneous Comparisons for Multiple Endpointssimecol Simulation of Ecological (and Other) Dynamic Systemssimpleboot Simple Bootstrap Routinessimstudy Simulation of Study DataSingleCaseES A Calculator for Single-Case Effect Sizessirt Supplementary Item Response Theory Modelssjlabelled Labelled Data Utility Functionssjmisc Data and Variable Transformation FunctionssjPlot Data Visualization for Statistics in Social Sciencesjstats Collection of Convenient Functions for Common Statistical Computationsslackr Send Messages, Images, R Objects and Files to ’Slack’ Channels/Usersslam Sparse Lightweight Arrays and Matricessm Smoothing Methods for Nonparametric Regression and Density Estimationsn The Skew-Normal and Related Distributions Such as the Skew-tsna Tools for Social Network Analysissnakecase Convert Strings into any Casesnow Simple Network of WorkstationsSnowballC Snowball Stemmers Based on the C ’libstemmer’ UTF-8 Librarysnowfall Easier cluster computing (based on snow).socviz Utility Functions and Data Sets for Data Visualizationsolitude An Implementation of Isolation Forestsolrium General Purpose R Interface to ’Solr’som Self-Organizing Mapsoma General-Purpose Optimisation With the Self-Organising Migrating Algorithmsos Search Contributed R Packages, Sort by Packagesourcetools Tools for Reading, Tokenizing and Parsing R Codesp Classes and Methods for Spatial Dataspacetime Classes and Methods for Spatio-Temporal Dataspam SPArse Matrixsparr Spatial and Spatiotemporal Relative RiskSparseM Sparse Linear Algebraspatcounts Spatial count regressionspatgraphs Graph Edge Computations for Spatial Point Patternsspatial Functions for Kriging and Point Pattern AnalysisspatialCovariance Computation of Spatial Covariance Matrices for Data on RectanglesSpatialEpi Methods and Data for Spatial EpidemiologySpatialExtremes Modelling Spatial Extremesspatialkernel Non-Parametric Estimation of Spatial Segregation in a Multivariate Point ProcessSpatialNP Multivariate Nonparametric Methods Based on Spatial Signs and Ranksspatialsegregation Segregation Measures for Multitype Spatial Point Patternsspatialwidget Formats Spatial Data for Use in Htmlwidgetsspatstat Spatial Point Pattern Analysis, Model-Fitting, Simulation, Testsspatstat.data Datasets for ’spatstat’spatstat.utils Utility Functions for ’spatstat’spBayes Univariate and Multivariate Spatial-Temporal Modelingspc Statistical Process Control – Calculation of ARL and Other Control Chart Performance Measuresspcosa Spatial Coverage Sampling and Random Sampling from Compact Geographical Strata

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spData Datasets for Spatial Analysisspdep Spatial Dependence: Weighting Schemes, Statisticsspe Stochastic Proximity Embeddingspeedglm Fitting Linear and Generalized Linear Models to Large Data Setsspeff2trial Semiparametric efficient estimation for a two-sample treatment effectspelling Tools for Spell Checking in Rspgrass6 Interface Between GRASS 6+ Geographical Information System and Rspgwr Geographically Weighted RegressionSpherWave Spherical Wavelets and SW-based Spatially Adaptive Methodssphet Estimation of Spatial Autoregressive Models with and without Heteroscedasticitysplancs Spatial and Space-Time Point Pattern Analysisspls Sparse Partial Least Squares (SPLS) Regression and Classificationspsurvey Spatial Survey Design and AnalysisspuRs Functions and Datasets for "Introduction to Scientific Programming and Simulation Using R"SQUAREM Squared Extrapolation Methods for Accelerating EM-Like Monotone AlgorithmssROC Nonparametric Smooth ROC Curves for Continuous DataSSDforR Functions to Analyze Single System Datastabledist Stable Distribution Functionsstabs Stability Selection with Error ControlStanHeaders C++ Header Files for Stanstars Spatiotemporal Arrays, Raster and Vector Data Cubesstartupmsg Utilities for Start-Up Messagesstatmod Statistical Modelingstatnet Software Tools for the Statistical Analysis of Network Datastatnet.common Common R Scripts and Utilities Used by the Statnet Project SoftwareStem Spatio-temporal models in Rstopwords Multilingual Stopword Listsstringdist Approximate String Matching, Fuzzy Text Search, and String Distance Functionsstringi Character String Processing Facilitiesstringr Simple, Consistent Wrappers for Common String Operationsstrucchange Testing, Monitoring, and Dating Structural Changesstyler Non-Invasive Pretty Printing of R Codesubselect Selecting Variable Subsetssuperpc Supervised principal componentsSuppDists Supplementary Distributionssurvey Analysis of Complex Survey Samplessurvival Survival AnalysissurvPresmooth Presmoothed Estimation in Survival AnalysissvDialogs ’SciViews’ - Standard Dialog Boxes for Windows, MacOS and Linuxessvglite An ’SVG’ Graphics DevicesvGUI SciViews - Manage GUIs in RsvIDE Functions to Ease Interactions Between R and IDE or Code EditorssvMisc SciViews - Miscellaneous FunctionssvSocket ’SciViews’ - Socket ServersvUnit ’SciViews’ - Unit, Integration and System TestingsvWidgets Management of GUI Widgets, Windows, and Other GUI ResourcesSweaveListingUtils Utilities for Sweave Together with TeX ’listings’ Packagesylly Hyphenation and Syllable Counting for Text Analysissys Powerful and Reliable Tools for Running System Commands in Rsystemfit Estimating Systems of Simultaneous Equationssystemfonts System Native Font Findingtables Formula-Driven Table GenerationTAM Test Analysis Modulestau Text Analysis Utilities

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taxize Taxonomic Information from Around the Webtcltk2 Tcl/Tk AdditionsTDA Statistical Tools for Topological Data AnalysisTDAmapper Analyze High-Dimensional Data Using Discrete Morse TheoryTeachingDemos Demonstrations for Teaching and Learningtensor Tensor product of arraystensorA Advanced Tensor Arithmetic with Named Indicestergm Fit, Simulate and Diagnose Models for Network Evolution Based on Exponential-Family Random Graph Modelstesseract Open Source OCR Enginetestit A Simple Package for Testing R Packagestestthat Unit Testing for Rtexreg Conversion of R Regression Output to LaTeX or HTML Tablestgp Bayesian Treed Gaussian Process ModelsTH.data TH’s Data Archivethreejs Interactive 3D Scatter Plots, Networks and Globestibble Simple Data Framestidygraph A Tidy API for Graph Manipulationtidymodels Easily Install and Load the ’Tidymodels’ Packagestidyposterior Bayesian Analysis to Compare Models using Resampling Statisticstidypredict Run Predictions Inside the Databasetidyr Tidy Messy Datatidyselect Select from a Set of Stringstidytext Text Mining using ’dplyr’, ’ggplot2’, and Other Tidy Toolstidyverse Easily Install and Load the ’Tidyverse’tigerstats R Functions for Elementary StatisticstikzDevice R Graphics Output in LaTeX FormattimeDate Rmetrics - Chronological and Calendar Objectstimereg Flexible Regression Models for Survival DatatimeSeries Financial Time Series Objects (Rmetrics)TinnR Resources of Tinn-R GUI/Editor for R Environmenttinytex Helper Functions to Install and Maintain ’TeX Live’, and Compile ’LaTeX’ Documentstis Time Indexes and Time Indexed Seriestkrplot TK Rplottm Text Mining Packagetmap Thematic Mapstmaptools Thematic Map ToolsTMB Template Model Builder: A General Random Effect Tool Inspired by ’ADMB’tmvnsim Truncated Multivariate Normal Simulationtnam Temporal Network Autocorrelation Models (TNAM)tnet Weighted, Two-Mode, and Longitudinal Networks Analysistokenizers Fast, Consistent Tokenization of Natural Language Texttraipse Shared Tools for Tracking Datatree Classification and Regression Treestreemap Treemap Visualizationtriangle Provides the Standard Distribution Functions for the Triangle Distributiontriebeard ’Radix’ Trees in ’Rcpp’trimcluster Cluster Analysis with Trimmingtrip Tools for the Analysis of Animal Track Datatripack Triangulation of Irregularly Spaced DatatripEstimation Metropolis Sampler and Supporting Functions for Estimating Animal Movement from Archival Tags and Satellite Fixestruncdist Truncated Random Variablestruncnorm Truncated Normal Distributiontruncreg Truncated Gaussian Regression Modelstrust Trust Region Optimization

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TSA Time Series Analysistseries Time Series Analysis and Computational Financetsna Tools for Temporal Social Network AnalysisTSP Traveling Salesperson Problem (TSP)TTR Technical Trading Rulestufte Tufte’s Styles for R Markdown Documentstune Tidy Tuning Toolstweedie Evaluation of Tweedie Exponential Family Modelstweenr Interpolate Data for Smooth Animationsucminf General-Purpose Unconstrained Non-Linear Optimizationufs Quantitative Analysis Made Accessibleunits Measurement Units for R Vectorsurca Unit Root and Cointegration Tests for Time Series Dataurltools Vectorised Tools for URL Handling and Parsinguroot Unit Root Tests for Seasonal Time SeriesUScensus2000cdp US Census 2000 Designated Places Shapefiles and Additional Demographic DataUScensus2000tract US Census 2000 Tract Level Shapefiles and Additional Demographic DataUScensus2010 US Census 2010 Suite of R Packagesusdata Data on the States and Counties of the United Statesuserfriendlyscience Quantitative Analysis Made Accessibleusethis Automate Package and Project SetupUsingR Data Sets, Etc. for the Text "Using R for Introductory Statistics", Second Editionutf8 Unicode Text Processinguuid Tools for Generating and Handling of UUIDsV8 Embedded JavaScript and WebAssembly Engine for Rvardiag Variogram Diagnosticsvars VAR Modellingvcd Visualizing Categorical Datavctrs Vector Helpersvdiffr Visual Regression Testing and Graphical Diffingvegan Community Ecology Packagevegdata Access Vegetation Databases and Treat TaxonomyVennDiagram Generate High-Resolution Venn and Euler Plotsverification Weather Forecast Verification UtilitiesVGAM Vector Generalized Linear and Additive ModelsVGAMdata Data Supporting the ’VGAM’ PackageVIM Visualization and Imputation of Missing Valuesvioplot Violin Plotvipor Plot Categorical Data Using Quasirandom Noise and Density Estimatesviridis Default Color Maps from ’matplotlib’viridisLite Default Color Maps from ’matplotlib’ (Lite Version)visNetwork Network Visualization using ’vis.js’ Libraryvisreg Visualization of Regression Modelswaffle Create Waffle Chart Visualizations in Rwaveslim Basic Wavelet Routines for One-, Two-, and Three-Dimensional Signal Processingwebdriver ’WebDriver’ Client for ’PhantomJS’webp A New Format for Lossless and Lossy Image Compressionwebshot Take Screenshots of Web Pageswesanderson A Wes Anderson Palette Generatorwhisker {{mustache}} for R, Logicless Templatingwhoami Username, Full Name, Email Address, ’GitHub’ Username of the Current Userwidgetframe ’Htmlwidgets’ in Responsive ’iframes’WikidataR API Client Library for ’Wikidata’WikipediR A MediaWiki API Wrapper

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wikitaxa Taxonomic Information from ’Wikipedia’withr Run Code ’With’ Temporarily Modified Global Statewordcloud Word Cloudsworkflows Modeling Workflowsworrms World Register of Marine Species (WoRMS) ClientWrightMap IRT Item-Person Map with ’ConQuest’ IntegrationWriteXLS Cross-Platform Perl Based R Function to Create Excel 2003 (XLS) and Excel 2007 (XLSX) FilesWRS2 A Collection of Robust Statistical Methodswskm Weighted k-Means Clusteringxergm Extensions of Exponential Random Graph Modelsxergm.common Common Infrastructure for Extensions of Exponential Random Graph Modelsxfun Miscellaneous Functions by ’Yihui Xie’xgboost Extreme Gradient BoostingXLConnect Excel Connector for RXLConnectJars JAR Dependencies for the XLConnect Packagexlsx Read, Write, Format Excel 2007 and Excel 97/2000/XP/2003 Filesxlsxjars Package required POI jars for the xlsx packageXML Tools for Parsing and Generating XML Within R and S-Plusxml2 Parse XMLxmlparsedata Parse Data of ’R’ Code as an ’XML’ Treexopen Open System Files, ’URLs’, Anythingxsplines ** No title available **xtable Export Tables to LaTeX or HTMLxts eXtensible Time Seriesyacca Yet Another Canonical Correlation Analysis PackageYaleToolkit Data exploration tools from Yale University.yaml Methods to Convert R Data to YAML and Backyardstick Tidy Characterizations of Model Performanceyhat Interpreting Regression EffectszCompositions Treatment of Zeros, Left-Censored and Missing Values in Compositional Data Setszeallot Multiple, Unpacking, and Destructuring AssignmentZelig Everyone’s Statistical Softwarezip Cross-Platform ’zip’ Compressionzipcode U.S. ZIP Code database for geocodingzipfR Statistical Models for Word Frequency Distributionszoo S3 Infrastructure for Regular and Irregular Time Series (Z’s Ordered Observations)base The R Base Packageboot Bootstrap Functions (Originally by Angelo Canty for S)class Functions for Classificationcluster "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.codetools Code Analysis Tools for Rcompiler The R Compiler Packagedatasets The R Datasets Packageforeign Read Data Stored by ’Minitab’, ’S’, ’SAS’, ’SPSS’, ’Stata’, ’Systat’, ’Weka’, ’dBase’, ...graphics The R Graphics PackagegrDevices The R Graphics Devices and Support for Colours and Fontsgrid The Grid Graphics PackageKernSmooth Functions for Kernel Smoothing Supporting Wand & Jones (1995)lattice Trellis Graphics for RMASS Support Functions and Datasets for Venables and Ripley’s MASSMatrix Sparse and Dense Matrix Classes and Methodsmethods Formal Methods and Classesmgcv Mixed GAM Computation Vehicle with Automatic Smoothness Estimationnlme Linear and Nonlinear Mixed Effects Models

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nnet Feed-Forward Neural Networks and Multinomial Log-Linear Modelsparallel Support for Parallel computation in Rrpart Recursive Partitioning and Regression Treesspatial Functions for Kriging and Point Pattern Analysissplines Regression Spline Functions and Classesstats The R Stats Packagestats4 Statistical Functions using S4 Classessurvival Survival Analysistcltk Tcl/Tk Interfacetools Tools for Package Developmenttranslations The R Translations Packageutils The R Utils Package

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