PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.
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Transcript of PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.
![Page 1: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/1.jpg)
P H Y L O G E NP H Y L O G E N E T I C S D A T A I N T E R F A C E
K E V I N F L O R I A N J O S H U A R O W E E R I C A W R I G H T
S O F T W A R E R E Q U I R E M E N T S S P E C
![Page 2: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/2.jpg)
Nexus file generator Subset of phylogenetic
analyses Easy UI to aid in process
Allows end user to range from beginning biology student to an experienced phylogenetic researcher
PURPOSE
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Taxa - taxonomic category or
group, such as a phylum, order, family, genus, or species.
Phylogeny - is the study of phylogenesis, or the evolutionary history, development and relationships among groups of organisms (e.g.species, or populations)
Morphological data – Morphology, a branch of biology dealing with the study of the form/structure of organisms and their features
DEFINITIONS
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GenBank - is the NIH genetic sequence database, an
annotated collection of all publicly available DNA sequences
Nexus File – As of now, the plain text file that PAUP, and systems like it, use to compare the taxa and DNA elements to determine how closely a set of organisms are related in evolution
PAUP- is a computational phylogenetics program for inferring evolutionary trees (phylogenies)
er
DEFINITIONS
![Page 5: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/5.jpg)
This system would be used
exclusively by biologists and biology students
System would simplify the data process in Phylogenetic analysis Students currently face a hurdle in
acclimating to current Phylogenetic analysis software
PHYLOGEN would ease the current process in PAUP/other in obtaining phylogenies
Current process is time-consuming even for biologists; PHYLOGEN would fill this niche, with an emphasis on education field
SYSTEM OVERVIEW
![Page 6: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/6.jpg)
Increased productivity in analyses will save time and money as
current processes are time-consuming New data interface will create time efficiencies for biologists in
research, professors in Universities, and students of Phylogenetics Software familiarization
Because this niche is in research/education, time cost here will be on professors implementing into curriculum, scientists into workflow
REFERENCES
…
![Page 7: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/7.jpg)
Phylogeny is highly informative to
other related disciplines There are a vast number of
applications that perform Phylogeny research, yet they are outdated in terms of UI, and few target the Education field
A modern UI for Nexus-File Manipulation on a mobile-friendly platform will set our niche package apart from the rest. With efficient PAUP integration,
our interface will serve as a powerful phylogenetic analysis launchpad
students will benefit from its mobility, clarity, and efficiency
SYSTEM INTERFACES
![Page 8: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/8.jpg)
There really are no alternative solutions to this very
particular vacancy/pinch in the process. due to the already established algorithms and analysis
methods in this branch of bioinformatics given the traditional common data format of NEXUS files
USER INTERFACES
![Page 9: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/9.jpg)
There really are no alternative solutions to this very
particular vacancy/pinch in the process. due to the already established algorithms and analysis
methods in this branch of bioinformatics given the traditional common data format of NEXUS files
HARDWARE INTERFACES
![Page 10: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/10.jpg)
There really are no alternative solutions to this very
particular vacancy/pinch in the process. due to the already established algorithms and analysis
methods in this branch of bioinformatics given the traditional common data format of NEXUS files
SOFTWARE INTERFACES
![Page 11: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/11.jpg)
There really are no alternative solutions to this very
particular vacancy/pinch in the process. due to the already established algorithms and analysis
methods in this branch of bioinformatics given the traditional common data format of NEXUS files
COMMUNICATION INTERFACES
![Page 12: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/12.jpg)
There really are no alternative solutions to this very
particular vacancy/pinch in the process. due to the already established algorithms and analysis
methods in this branch of bioinformatics given the traditional common data format of NEXUS files
MEMORY CONSTRAINTS
![Page 13: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/13.jpg)
There really are no alternative solutions to this very
particular vacancy/pinch in the process. due to the already established algorithms and analysis
methods in this branch of bioinformatics given the traditional common data format of NEXUS files
OPERATIONS
![Page 14: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/14.jpg)
There really are no alternative solutions to this very
particular vacancy/pinch in the process. due to the already established algorithms and analysis
methods in this branch of bioinformatics given the traditional common data format of NEXUS files
SITE ADAPTATION REQUIREMENTS
![Page 15: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/15.jpg)
Increased productivity in analyses will save time and money as
current processes are time-consuming New data interface will create time efficiencies for biologists in
research, professors in Universities, and students of Phylogenetics Software familiarization
Because this niche is in research/education, time cost here will be on professors implementing into curriculum, scientists into workflow
PRODUCT FUNCTIONS
…
![Page 16: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/16.jpg)
Increased productivity in analyses will save time and money as
current processes are time-consuming New data interface will create time efficiencies for biologists in
research, professors in Universities, and students of Phylogenetics Software familiarization
Because this niche is in research/education, time cost here will be on professors implementing into curriculum, scientists into workflow
PRODUCT FUNCTIONS
…
![Page 17: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/17.jpg)
Increased productivity in analyses will save time and money as
current processes are time-consuming New data interface will create time efficiencies for biologists in
research, professors in Universities, and students of Phylogenetics Software familiarization
Because this niche is in research/education, time cost here will be on professors implementing into curriculum, scientists into workflow
USER CHARACTERISTICS
…
![Page 18: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/18.jpg)
Increased productivity in analyses will save time and money as
current processes are time-consuming New data interface will create time efficiencies for biologists in
research, professors in Universities, and students of Phylogenetics Software familiarization
Because this niche is in research/education, time cost here will be on professors implementing into curriculum, scientists into workflow
CONSTRAINTS/ASSUMPTIONS
…
![Page 19: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/19.jpg)
Increased productivity in analyses will save time and money as
current processes are time-consuming New data interface will create time efficiencies for biologists in
research, professors in Universities, and students of Phylogenetics Software familiarization
Because this niche is in research/education, time cost here will be on professors implementing into curriculum, scientists into workflow
SPECIFIC REQUIREMENTS
…
![Page 20: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/20.jpg)
Increased productivity in analyses will save time and money as
current processes are time-consuming New data interface will create time efficiencies for biologists in
research, professors in Universities, and students of Phylogenetics Software familiarization
Because this niche is in research/education, time cost here will be on professors implementing into curriculum, scientists into workflow,
EXTERNAL INTERFACE REQUIREMENTS
…
![Page 21: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/21.jpg)
Phylogeny is highly informative to
other related disciplines There are a vast number of
applications that perform Phylogeny research, yet they are outdated in terms of UI, and few target the Education field
A modern UI for Nexus-File Manipulation on a mobile-friendly platform will set our niche package apart from the rest. With efficient PAUP integration,
our interface will serve as a powerful phylogenetic analysis launchpad
students will benefit from its mobility, clarity, and efficiency
FUNCTIONAL REQUIREMENTS
![Page 22: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/22.jpg)
Phylogeny is highly informative to
other related disciplines There are a vast number of
applications that perform Phylogeny research, yet they are outdated in terms of UI, and few target the Education field
A modern UI for Nexus-File Manipulation on a mobile-friendly platform will set our niche package apart from the rest. With efficient PAUP integration,
our interface will serve as a powerful phylogenetic analysis launchpad
students will benefit from its mobility, clarity, and efficiency
PERFORMANCE REQUIREMENTS
![Page 23: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/23.jpg)
Phylogeny is highly informative to
other related disciplines There are a vast number of
applications that perform Phylogeny research, yet they are outdated in terms of UI, and few target the Education field
A modern UI for Nexus-File Manipulation on a mobile-friendly platform will set our niche package apart from the rest. With efficient PAUP integration,
our interface will serve as a powerful phylogenetic analysis launchpad
students will benefit from its mobility, clarity, and efficiency
DESIGN CONSTRAINTS
![Page 24: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/24.jpg)
Phylogeny is highly informative to
other related disciplines There are a vast number of
applications that perform Phylogeny research, yet they are outdated in terms of UI, and few target the Education field
A modern UI for Nexus-File Manipulation on a mobile-friendly platform will set our niche package apart from the rest. With efficient PAUP integration,
our interface will serve as a powerful phylogenetic analysis launchpad
students will benefit from its mobility, clarity, and efficiency
DATABASE REQUIREMENT
![Page 25: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/25.jpg)
Phylogeny is highly informative to
other related disciplines There are a vast number of
applications that perform Phylogeny research, yet they are outdated in terms of UI, and few target the Education field
A modern UI for Nexus-File Manipulation on a mobile-friendly platform will set our niche package apart from the rest. With efficient PAUP integration,
our interface will serve as a powerful phylogenetic analysis launchpad
students will benefit from its mobility, clarity, and efficiency
SOFTWARE SYSTEM ATTRIBUTES
![Page 26: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/26.jpg)
There really are no alternative solutions to this very
particular vacancy/pinch in the process. due to the already established algorithms and analysis
methods in this branch of bioinformatics given the traditional common data format of NEXUS files
RELIABILITY & SECURITY
![Page 27: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/27.jpg)
There really are no alternative solutions to this very
particular vacancy/pinch in the process. due to the already established algorithms and analysis
methods in this branch of bioinformatics given the traditional common data format of NEXUS files
AVAILABILITY & PORTABILITY
![Page 28: PHYLOGENETICS DATA INTERFACE KEVIN FLORIANJOSHUA ROWEERICA WRIGHT SOFTWARE REQUIREMENTS SPEC.](https://reader035.fdocuments.in/reader035/viewer/2022062412/5a4d1afa7f8b9ab059983506/html5/thumbnails/28.jpg)
There really are no alternative solutions to this very
particular vacancy/pinch in the process. due to the already established algorithms and analysis
methods in this branch of bioinformatics given the traditional common data format of NEXUS files
MAINTAINABILITY & SECURITY