Patterns of genetic diversity in Fagus sylvatica · [6] Weising K, Gardner RC (1999) A set of...
Transcript of Patterns of genetic diversity in Fagus sylvatica · [6] Weising K, Gardner RC (1999) A set of...
Amaryllis Vidalis1, Aristotelis Papageorgiou2, Seraphim Hatziskakis2, Ioannis Tsiripidis3, Oliver Gailing1, Reiner Finkeldey1
1 Department of Forest Genetics and Forest Tree Breeding, Büsgen Institute, Georg-August-University Göttingen, Büsgenweg 2, 37077 Göttingen, Germany
2 Department of Forestry, Environment and Natural Resources, Democritus University of Thrace, P.O. Box 129, Pantazidou 193, 68200 Orestiada, Greece
3 School of Biology, Department of Botany, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece
Patterns of genetic diversity in Fagus sylvatica L. in Rodopi Mountains of N.E. Greece
PL LL LW LMW LA LP NS AN LI MWI PI RC Elatia 0,95 7,86 4,85 4,02 25,97 19,07 8,00 36,41 163,00 51,16 12,11 1,06
Echinos 0,88 8,56 5,21 4,59 30,74 20,78 9,60 38,48 166,00 53,59 10,31 1,07
Papikio 0,97 8,74 5,33 4,68 31,56 21,15 9,20 38,48 165,00 53,32 11,03 1,07
Dadia 0,83 8,73 5,22 4,62 31,10 20,92 9,30 37,37 168,00 52,81 9,56 1,08 Table 1. Average values of morphological traits measured per population
0% 20% 40% 60% 80% 100%
Dadia
Papikio
Echinos
Elatia
ФT1
ФT2ФT3
Figure 2. Phylotypes frequencies within populations
Hs Ht Gst AFLPs 0,234 0,255 0,089
cpDNA haplotypes 0,551 0,925 0,405
Elatia Echinos Papikio Dadia Number of polymorphic zones AFLPs 26 26 28 33
Percentage of polymorphic zones AFLPs 76,47 76,47 82,35 97,06
Expected heterozygosity - AFLPs 0,212 0,213 0,243 0,269
Haplotypes numbers - cpDNA 3 4 8 9
Expected "heterozygosity" - cpDNA 0,153 0,438 0,707 0,813
0% 20% 40% 60% 80% 100%
Dadia
Papikio
Echinos
Elatia
145-115 146-110 146-115 147-110 147-115 148-110 148-115149-110 150-110 151-110 152-110 153-110 154-110 156-110
Table 2. Diversity and differentiation of populations (Nei 1987)
Table 3. Genetic diversity within populations
Figure 3. Frequences of cpDNA haplotypes
According to the most accepted taxonomic classification of beech in Europe, Fagus sylvatica can be subdivided into two subspecies (ssp. sylvatica and ssp. orientalis) [1]. The
current beech populations of Europe may have a common origin from refugial populations which survived the last glaciation's era [2]. The wider area of Greek Rodopi is being
considered as potential refugium for European beech [3]. In previous research, high variation in morphological traits was found in Greek beech populations. At molecular level,
variation has been generally found higher in the Mediterranean part of Fagus sylvatica distribution, as compared to that found in central and western European populations [4].
Specifically, in cpDNA of beech, former research has revealed no or minor polymorphism in large areas of its natural distribution [4].
Material and methods
PL Petiole length LL Lamina length LW Lamina width
LMW Distance between the lower part of the lamina and the maximum width point on the axis
LA Lamina area LP Lamina perimeter NS Number of secondary nerves
AN Angle between the primary and the central secondary nerve
Morphological traits
Molecular markers
AFLPs [5] Primer pairs
Restriction enzymes EcoRI- MseI
Preselective amplification E01/M03 (Keygene)
Selective reaction E37/M68
LI LL/LW · 100 MWI LMW/LL · 100
PI PL/LL · 100
RC
Radius of a cycle with an area equal to LA divided by the radius of a cycle having a perimeter equal to LP
DNA was extracted from buds using the DNeasy® Plant Kit (Qiagen)
Results
Morphological traits Molecular markers
Elatia Echinos Papikio Dadia
Elatia 0 6,068 4,966 1,522
Echinos 0,04 0 0,276 3,619
Papikio 0,07 0,03 0 3,028
Dadia 0,056 0,018 0,013 0
Conclusions
• The beech populations of Rodopi mountains show high levels of genetic diversity within populations in leaf morphological traits, AFLPs and cpSSRs
• The levels of genetic variation within populations were found high compared to previous surveys in European populations
• Clinal variation patterns were observed at both morphological traits and molecular markers; variation increases from the west to the east
• Differentiation among populations was, as expected, stronger at maternally inherited cpDNA, a sign of uninterrupted history of beech occurrence in the area.
• The results support the assumption that the Rodopi massif is an introgression zone, where the European beech (ssp. sylvatica) meets the eastern beech (ssp. orientalis)
• Several haplotypes found in the easternmost population were also reported for ssp. orientalis in Turkey [7]
Hs: total diversity within populations
Ht: total diversity
Gst: total differentiation
Table 4. Genetic distance (Nei 1972) between populations cpDNA SSRs above, AFLPs below diagonal
PCA, revealed three independent components
expressing 84,6% of the total variation. Based on
these components and the Eucledian distances
between the individuals, a grouping was conducted,
where all the trees belonging to the same group were
discribed by the same „phylotype“ (ФT).
ELATIA
ECHINOS PAPIKIO
DADIA
ФT1: corresponds to characteristics that fit leaf morphology of ssp. sylvatica
ФT2, ФT3: show intermediate morphological traits between the two subspecies,
but resembling more ssp. orientalis
AIMS OF THE STUDY: - Description of variation patterns in beech on the Rodopi Mountains (morphological traits and molecular markers)
- Test of the hypothesis of possible introgression between the two subspecies.
Chloroplast SSRs Primer pairs [6]
Applied ccmp4, ccmp7, ccmp10
Polymorphic ccmp7, ccmp10
Figure 1. Location of the populations
Introduction
References
[1] Denk T (2003) Phylogeny of Fagus L. (Fagaceae) based on morphological data. Plant Syst Evol 240:55–81 [2] Taberlet P, Fumagalli L, Wust-Sausy A, Cosson J (1998) Comparative phylogeography and postglacial colonization routes in Europe. Mol Ecol 7:453–464 [3] Pott R (1997) Invasion of beech and establishment of beech forests in Europe. Annali di Botanica LV:27–58 [4] Magri D, Vendramin GG, Comps B, Dupanloup I, Geburek T, Gömöry D, Latałova M, Litt T, Paule L, Roure JM, Tantau I, van der Knaap WO, Petit RJ, de Beaulieu J-L (2006) A new scenario for the Quaternary history of European beech populations: paleobotanical evidence and genetic consequences. New Phytol 171:199–221 [5] Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407–4414 [6] Weising K, Gardner RC (1999) A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of decotyledonous angiosperms. Genome 42:9–19 [7] Gailing O, von Wuehlisch G (2004) Nuclear markers (AFLPs) and chloroplast microsatellites differ between Fagus sylvatica and Fagus orientalis. Silvae Genet 53:105–110
Acknowlegements
The authors are grateful to Olga Artes and Ludger Leinemann for their technical support and advice and Dimitris Kasimiadis and Artemis Kafkaletou-Diez for their help during sampling and the morphological trait measurements
Plant material: 4 populations of 25 individuals were randomly sampled (leaves and buds)